Genetic diversity of indigenous tropical fast-growing rhizobia isolated from soybean nodules

This study characterized genetically 30 fast-growing rhizobial strains isolated from nodules of Asian and modern soybean genotypes that had been inoculated with soils from disparate regions of Brazil. Analyses by rep-PCR (ERIC and REP) and RAPD indicated a high level of genetic diversity among the strains. The RFLP-PCR and sequencing analysis of the 16S rRNA genes indicated that none of the strains was related to Sinorhizobium (Ensifer) fredii, whereas most were related to Rhizobium tropici (although they were unable to nodulate Phaseolus vulgaris) and to Rhizobium genomic species Q. One strain was related to Rhizobium sp. OR 191, while two others were closely related to Agrobacterium (Rhizobium) spp.; furthermore, symbiotic effectiveness with soybean was maintained in those strains. Five strains were related to Bradyrhizobium japonicum and B. elkanii, with four of them being similar to strains carried in Brazilian inoculants, therefore modifications in physiological properties, as a shorter doubling time might have resulted from adaptation to local conditions. Phospholipid fatty acid analysis (PFLA) was less precise in delineating taxonomic relationships. The strains fit into eight Nod-factor profiles that were related to rhizobial species, but not to N₂-fixation capacity or competitiveness. The data obtained highlight the diversity and promiscuity of rhizobia in the tropics, being capable of nodulating exotic legumes and might reflect ecological strategies to survive in N-poor soils; in addition, the diversity could also represent an important source of efficient and competitive rhizobial strains for the tropics. Putative new rhizobial species were detected only in undisturbed soils. Three species (R. tropici, B. japonicum and B. elkanii) were found under the more sustainable management system known as no-till, while the only species isolated from soils under conventional till was R. tropici. Those results emphasize that from the moment that agriculture was introduced into undisturbed soils rhizobial diversity has changed, being drastically reduced when a less sustainable soil management system was adopted.     

Mechanisms of Enhancing Photosynthetic Gas Exchange in Date Palm Seedlings (<Emphasis Type="Italic">Phoenix dactylifera</Emphasis> L.) under Salinity Stress by a 5-Aminolevulinic Acid-based Fertilizer

Photosynthetic gas exchange characteristics, salt uptake, pigment contents, and electrolyte leakage were examined in date palm seedlings (Phoenix dactylifera L.) subject to seawater treatments at 1-, 15-, and 30-mS cm⁻¹ salinity levels in the presence or absence of 0.08% ALA-based (5-aminolevulinic acid-based) functional fertilizer commercially known as Pentakeep-v. Date palm seedlings accumulated significant amounts of Na⁺ in the foliage with increasing salinity, about a threefold increase in the accumulated Na⁺ between the control and 30-mS cm⁻¹salinity treatment. Electrolyte leakage indicated a significant reduction in membrane integrity as salinity increased. A strong linear correlation was observed between the chlorophyll (chl) a/b ratio and assimilation rate throughout salinity treatments. The slope (b) and the correlation coefficient between the chl a/b ratio and assimilation suggested that salinity reduced assimilation predominantly via the reduction in chlorophyll a contents (r ² = 0.885 and b = 1.77, P < 0.05). Plants treated with Pentakeep-v showed a similar response with increasing salinity but at higher levels of both chl a/b ratios and assimilation rates. Mechanistic analysis of A:Ci response curves showed that photosynthetic gas exchange in seedlings of the date palm was significantly reduced with increasing salinity due to gas phase limitation (S _L) as evident by stomatal conductance (g _s) values. Salinity did not induce any change in the carboxylation efficiency of the rubisco enzyme (Vc,max), or in the rate of electrons supplied by the electron transport system for ribulose 1,5-bisphosphate (RuBP) regeneration (Jmax). Accelerated carbon loss through respiration has significantly contributed to the described reduction in assimilation and increased CO₂ compensation point (Γ). Only at the 30-mS cm⁻¹ salinity level did treatment with Pentakeep-v reduce Na⁺ accumulation in the leaves, and caused a reduction in K⁺ selective uptake, leading to a concomitant reduction in K⁺/Na⁺ ratios. Pentakeep-v significantly improved chl a contents in all treatments, which was subsequently reflected in total chlorophyll and chl a/b ratios. The non-gas-phase components of the photosynthetic process (biochemical factors limiting gas exchange) were significantly improved by Pentakeep-v applications. Specifically, Pentakeep-v enhanced the biochemical efficiency of carbon fixation (Vc,max) and the rate of electron transport required for RuBP regeneration (Jmax) by 37.4% and 17.8%, respectively, over untreated plants at a salinity level of 15 mS cm^–1. In addition, Pentakeep-v reduced S _L to values similar to those of control plants (9.07%) and lowered CO₂ compensation points by reducing respiratory CO₂ loss, with increasing salinity to 30 mS cm⁻¹. We, therefore, conclude that the ALA-based fertilizer Pentakeep-v improves salt tolerance in date palm seedlings by increasing photosynthetic assimilation. The latter is mediated via boosting light-harvesting capabilities of the treated plants by increasing chl a content and by reducing stomatal limitation to photosynthetic gas exchange.     

Occurrence of pancreatic lipase-related protein-2 in various species and its relationship with herbivore diet

Birds maintain higher plasma glucose concentrations (P(Glu)) than other vertebrates of similar body mass and, in most cases, appear to store comparatively very little glucose intracellularly as glycogen. In general, birds are insensitive to the regulation of P(Glu) by insulin. However, there appears to be no phylogenetic or dietary pattern in the avian response to exogenous insulin. Moreover, the high levels of P(Glu) do not appear to lead to significant oxidative stress as birds are longer-lived compared to mammals. Glucose is absorbed by the avian gastrointestinal tract by sodium-glucose co-transporters (SGLTs; apical side of cells) and glucose transport proteins (GLUTs; basolateral side of cells). In the kidney, both types of glucose transporters appear to be upregulated as no glucose appears in the urine. Data also indicate that the avian nervous system utilizes glucose as a metabolic substrate. In this review, we have attempted to bring together information from a variety of sources to portray how glucose serves as a metabolic substrate for birds by considering each organ system involved in glucose homeostasis.     

Actin-cytoskeleton dynamics in non-monotonic cell spreading

The spreading of motile cells on a substrate surface is accompanied by reorganization of their actin network. We show that spreading in the highly motile cells of Dictyostelium is non-monotonic, and thus differs from the passage of spreading cells through a regular series of stages. Quantification of the gain and loss of contact area revealed fluctuating forces of protrusion and retraction that dominate the interaction of Dictyostelium cells with a substrate. The molecular basis of these fluctuations is elucidated by dual-fluorescence labeling of filamentous actin together with proteins that highlight specific activities in the actin system. Front-to-tail polarity is established by the sorting out of myosin-II from regions where dense actin assemblies are accumulating. Myosin-IB identifies protruding front regions, and the Arp2/3 complex localizes to lamellipodia protruded from the fronts. Coronin is used as a sensitive indicator of actin disassembly to visualize the delicate balance of polymerization and depolymerization in spreading cells. Short-lived actin patches that co-localize with clathrin suggest that membrane internalization occurs even when the substrate-attached cell surface expands. We conclude that non-monotonic cell spreading is characterized by spatiotemporal patterns formed by motor proteins together with regulatory proteins that either promote or terminate actin polymerization on the scale of seconds.Key words: actin cytoskeleton, Arp 2/3 complex, cell adhesion, cell spreading, Coronin, Dictyostelium, myosin, self-organization, clathrin     

Biochemical characterization,cloning and molecular modeling of a digestive lipase from red seabream (Pagrus major): Structural explanation of the interaction deficiency with colipase and lipidic interface

Red seabream digestive lipase (RsDL) was purified from fresh pyloric caeca. Pure RsDL has an apparent molecular mass of 50 kDa. The RsDL is more active on short‐chain triacylglycerols (TC₄), and enzymatic activity decreases when medium (TC₈) or long‐chain (olive oil) triacylglycerols were used as substrates. The specific activities of RsDL are very weak as compared to those obtained with classical pancreatic lipases. No colipase was detected in the red seabream pyloric caeca. Furthermore, the RsDL was not activated by a mammal colipase. Similar results were reported for annular seabream lipase. In order to explain structurally the discrepancies between sparidae and mammal lipases, genes encoding mature RsDL and five other lipases from sparidae fish species were cloned and sequenced. Phylogenetic studies indicated the closest homology of sparidae lipases to bird pancreatic ones. Structural models were built for annular seabream and RsDL under their closed and open forms using mammal pancreatic lipases as templates. Several differences were noticed when analyzing the amino acids corresponding to those involved in HPL binding to colipase. This is likely to prevent interaction between the fish lipase and the mammalian colipase and may explain the fact that mammalian colipase is not effective in activating sparidae lipases. In addition, several hydrophobic residues, playing a key role in anchoring pancreatic lipase onto the lipid interface, are replaced by polar residues in fish lipases. This might explain the reason why the latter enzymes display weak activity levels when compared to mammalian pancreatic lipases.     

Switchgrass growth and pine–switchgrass interactions in established intercropping systems

Intercropping switchgrass (Panicum virgatum L.) with loblolly pine (Pinus taeda L.) has been proposed for producing bioenergy feedstock in the southeastern United States. This study investigated switchgrass growth and pine–switchgrass interactions at two established experimental fields (7‐year‐old Lenoir site and 5‐year‐old Carteret site) located on the coastal plain of eastern United States. Position effects (edge and center of switchgrass alley in intercropping plots) and treatment effects (intercropping vs. grass‐only) on aboveground switchgrass growth were evaluated. Interspecific interactions with respect to capturing resources (light, soil water, and nitrogen) were investigated by measuring photosynthetically active radiation (PAR) above grass canopy, soil moisture, and soil mineral nitrogen contents. Switchgrass growth was significantly (P = 0.001) affected by treatments in Lenoir and by position (P < 0.0001) in both study sites. Relative to the center, PAR above grass canopy at edge in both sites was about 48% less during the growing season. Soil water content during the growing season at the edge of grass alley was significantly (P = 0.0001) lower by 23% than at the center in Lenoir, while no significant (P = 0.42) difference was observed in Carteret, in spite of more grass growth at center at both sites. Soil mineral nitrogen content at the center of intercropping plots in Lenoir (no fertilization during 2015) was significantly (P < 0.07) lower than at the edge during the peak of growing season (June, July, and August), but not during early and late parts of growing season (May, September, and November). Position effects on soil water and mineral nitrogen were less evident under conditions with higher external inputs (rainfall and fertilization) and lower plant uptake during nongrowing seasons. Results from this study contributed to a better understanding of above‐ and belowground pine–switchgrass interactions which is necessary to properly manage this new cultivation system for bioenergy production in the southeastern United States.     

Isolation and structure of d-xylans from pericarp seeds of Opuntia ficus-indica prickly pear fruits

Xylans were isolated from the pericarp of prickly pear seeds of Opuntia ficus-indica (OFI) by alkaline extraction, fractionated by precipitation and purified. Six fractions were obtained and characterized by sugar analysis and NMR spectroscopy. They were assumed to be (4-O-methyl-d-glucurono)-d-xylans, with 4-O-α-d-glucopyranosyluronic acid groups linked at C-2 of a (1→4)-β-d-xylan. The sugar composition and the ¹H and ¹³C NMR spectra showed that their chemical structures were very similar, but with different proportions of d-Xyl and 4-O-Me-d-GlcA. Our results showed that, on average, the water soluble xylans have one nonreducing terminal residue of 4-O-methyl-d-glucuronic acid for every 11 to 14 xylose units, whereas in the water non-soluble xylans, xylose units can varied from 18 to 65 residues for one nonreducing terminal residue of 4-O-methyl-d-glucuronic acid.     

Antioxidant Activity of Vitamin C against LPS-Induced Septic Cardiomyopathy by Down-Regulation of Oxidative Stress and Inflammation

In severe cases of sepsis, endotoxin-induced cardiomyopathy can cause major damage to the heart. This study was designed to see if Vitamin C (Vit C) could prevent lipopolysaccharide-induced heart damage. Eighteen Sprague Dawley male rats (n = 6) were divided into three groups. Rats received 0.5 mL saline by oral gavage in addition to a standard diet (Control group), rats received one dose of endotoxin on day 15 (lipopolysaccharide) (LPS) (6 mg/kg), which produced endotoxemia (Endotoxin group), and rats that received 500 mg/Kg BW of Vit C by oral gavage for 15 days before LPS administration (Endotoxin plus Vit C group). In all groups, blood and tissue samples were collected on day 15, six hours after LPS administration, for histopathological and biochemical analysis. The LPS injection lowered superoxide dismutase (SOD) levels and increased malondialdehyde in tissues compared with a control group. Furthermore, the endotoxin group showed elevated inflammatory biomarkers, tumor necrosis factor-α (TNF-α) and interleukin-6 (IL-6). Both light and electron microscopy showed that the endotoxic-treated group’s cardiomyocytes, intercalated disks, mitochondria, and endothelial cells were damaged. In endotoxemic rats, Vit C pretreatment significantly reduced MDA levels and restored SOD activity, minimized biomarkers of inflammation, and mitigated cardiomyocyte damage. In conclusion: Vit C protects against endotoxin-induced cardiomyopathy by inhibiting oxidative stress cytokines.