Sensitivity and specificity amplification in signal transduction

Intracellular signal transduction pathways transmit signals from the cell surface to various intracellular destinations, such as cytoskeleton and nucleus through a cascade of protein-protein interactions and activation events, leading to phenotypic changes such as cell proliferation, differentiation, and death. Over the past two decades, numerous signaling proteins and signal transduction pathways have been discovered and characterized. There are two major classes of signaling proteins: phosphoproteins (e.g., mitogen-activated protein kinases) and guanosine triphosphatases (GTPases; e.g., Ras and G proteins). They both function as molecular switches by addition and removal of one or more high-energy phosphate groups. This review discusses developments that seek to quantify the signal transduction processes with kinetic analysis and mathematical modeling of the signaling phosphoproteins and GTPases. These studies have provided insights into the sensitivity and specificity amplification of biological signals in integrated systems.     

The thymic stromal cell line MTSC4 induced thymocyte apoptosis in a non-MHC-restricted manner

Mouse thymic stromal cell line 4 (MTSC4) is one of the stromal cell lines established in our laboratory. While losing the characteristics of epithelial cells, they express some surface markers shared with thymic dendritic cells (TDCs). To further study the biological functions of these cells, we compared the capability of MTSC4 with TDCs in the induction of thymocyte apoptosis, using thymic reaggregation culture system. Apoptosis of thymocytes induced by MTSC4 and TDCs was measured by Annexin V and PI staining and analyzed by flow cytometry. We found that MTSC4 selectively augmented the apoptosis of CD4^ 8^ (DP) thymocytes. This effect was Fas/FasL independent and could not be blocked by antibodies to MHC class I and class II molecules. In addition, MTSC4 enhanced the apoptosis of DP thymocytes from different strains of mice, which implies that MTSC4-induced thymocyte apoptosis is not mediated by the TCR recognition of self peptide/MHC molecules. In contrast to MTSC4, thymocyte apoptosis induced by TDCs was MHC-restricted. Thus, MHC-independent fashion of stromal-DP thymocyte interaction may be one of the ways to induce thymocyte apoptosis in thymus. Our study has also shown that the interaction of MTSC4 stromal cells and thymocytes is required for the induction of thymocyte apoptosis.     

Fluorescence studies of rat cellular retinol binding protein II produced in Escherichia coli: an analysis of four tryptophan substitution mutants.

Rat intestinal cellular retinol binding protein II (CRBP II) is an abundant 134-residue protein that binds all-trans-retinol which contains 4 tryptophans in positions 9, 89, 107, and 110. Our ability to express CRBP II in Escherichia coli and to construct individual tryptophan substitution mutants by site-directed mutagenesis has provided a useful model system for studying the fluorescence of a multi-tryptophan protein. Each of the four mutant proteins binds all-trans-retinol with high affinity, although their affinities are less than that of the wild-type protein. Steady-state and time-resolved fluorescence analyses of these proteins indicate that W107 is at the hydrophobic binding site, W110 is in a polar environment, and the remaining two tryptophans are in a hydrophobic environment. Time-resolved fluorescence study indicates that excited-state energy transfer occurs from the hydrophobic tryptophans to W110. The Stern-Volmer analysis with acrylamide of these proteins reveals that static quenching occurs in the W9F mutant protein while others do not. The fluorescence of rat intestinal fatty acid binding protein (I-FABP), a related protein of known X-ray structure, was also studied for comparison. The results of these findings, coupled with those derived from NMR studies and molecular graphics, suggest that CRBP II undergoes minor structural changes in all of the mutant proteins. Since these effects may be cumulative on the protein structure and function, any conclusions derived from higher mutants in this family of proteins must be treated with caution.     

链状亚历山大藻共附生细菌多样性

采用非分离培养分析方法,直接提取链状亚历山大藻（Alexandrium catenella）共附生细菌总DNA,以之为模板进行PCR扩增获得细菌16S rDNA基因片段,并构建16S rDNA克隆文库。通过16S rDNA限制性酶切片段长度多态性（restriction fragment length polymorphism,RFLP）和测序方法对链状亚历山大藻共附生细菌的多样性进行了研究。84个16S rDNA克隆片段经限制性内切酶HaeⅢ酶切分析,得到30种不同的酶切指纹类型。挑选50个克隆子进行测序获得其16S rDNA部分序列,并对16S rDNA序列进行聚类分析构建了系统进化树。结果表明,链状亚历山大藻共附生的细菌多样性较强,优势细菌类群为变形菌α亚群（α-Proteobacteria）和拟杆菌（Bacteroidetes）,其中玫瑰杆菌（Roseobacter sp.）在α-Proteobacteria中占绝对优势。     

Mussaenda yunnanensis sp. nov. (Rubiaceae), a new functionally dioecious species from Yunnan,China

Mussaenda yunnanensis, a new dioecious species of Rubiaceae from Yunnan Province, China, is described and illustrated. The new species can be recognized by its slender stem, congested‐cymose inflorescences and long corolla tubes. Differences between M. yunnanensis and two morphologically similar species (M. pubescens and M. antiloga) are presented. We also provide a key to all dioecious species of Mussaenda in China. The delimitation of the new species is further supported by molecular phylogenetic analyses based on eight plastid loci.     

UV-B辐射方向对白三叶克隆整合的影响

增强UV-B辐射会对植物生长和生理生化过程产生有害效应。克隆植物中,相连的克隆分株对经常共享资源和激素,然而鲜有关于异质性UV-B辐射下UV-B辐射方向对克隆整合的影响及克隆植物形态结构变化的报道。模拟同质(克隆分株片段均处于自然背景辐射)和异质(克隆分株一端处于自然背景辐射,另一端处于补加的UV-B辐射)UV-B辐射,以克隆植物白三叶为材料,进行连接和隔断处理,研究UV-B辐射方向对克隆整合强度变化、叶片形态结构特化及生理可塑性的影响。结果表明:异质性UV-B辐射下,15N同位素标记端保留的15N百分比高于同质UV-B辐射处理,转移到无标记相连端的15N含量则降低,紫外辐射处理和同位素标记是否处于同一分株端对结果无显著性影响,说明克隆植物白三叶生理整合存在但整合强度降低,辐射方向与克隆整合强度无关;隔断处理组气孔长度增加,栅栏组织增厚,但连接处理组却无此变化,表明生理整合在白三叶叶片形态结构特化中发挥作用。UV-B辐射下,最小荧光、电子传递速率及光化学淬灭系数降低但非光化学淬灭系数升高,而生理整合却使结果相反;叶绿素和紫外吸收物可在异质性UV-B辐射相连的两端运输分享。以上均表明异质UV-B辐射环境中,UV-B辐射胁迫端克隆分株通过生理整合从非胁迫端获益,并以此提高胁迫环境中克隆植物对资源的利用效率。     

鲍姆纤孔菌（桑黄）不同方式发酵的菌丝体生物活性比较

利用液体发酵、木屑固体发酵和米饭固体发酵3种方式培养鲍姆纤孔菌（桑黄）菌丝体,对菌丝体醇提物的体外抗氧化、抗肿瘤和抗衰老生物活性进行了研究。结果表明,木屑固体发酵、液体发酵和米饭固体发酵的菌丝体醇提物清除H2O2自由基的IC50值分别为78.28±0.32、27.73±0.57和7.84±0.37;米饭培养的桑黄菌丝体醇提物在低浓度500μg/mL下对超氧阴离子自由基清除作用到达80%,在相同的浓度下对DPPH自由基清除率也明显高于其他两种方法,表现出较高的抗氧化活性。木屑以及米饭培养方法得到的菌丝体对PC12神经细胞损伤修复均有较好的效果,液体培养的桑黄菌丝体表现的修复作用较低;液体发酵培养的菌丝体醇提物浓度在100μg/mL时,对肿瘤细胞HepG2的抑制率达70%,高于其他两种培养方法的抑制作用。     

供氮水平对盐胁迫下水稻叶片光合及叶绿素荧光特性的影响

为了解供氮水平对不同时期盐胁迫下水稻(Oryza sativa)叶片光合及叶绿素荧光特性的影响, 以2个北方常规粳稻(Oryza sativa subsp. japonica)品种为材料, 在5个氮水平下进行培养, 于分蘖期、孕穗期和抽穗期分别进行盐胁迫处理, 测定分析了水稻叶片光合及叶绿素荧光参数的变化。结果表明, 与对照相比, 盐胁迫下水稻叶片的净光合速率(P_n)、蒸腾速率(T_r)、气孔导度(G_s)和表观叶肉导度(AMC)均显著降低, 在分蘖期、孕穗期和抽穗期分别以2N、1N和1/2N水平下降低的百分率最小; 气孔限制值(L_s)则显著增加, 分别以2N、1N和1/2N水平下增加的百分率最大。盐胁迫下, 与对照相比, PSII的实际光合效率(ΦPSII)、表观光合量子传递效率(ETR)和光化学淬灭(qP)均显著降低, 在分蘖期、孕穗期和抽穗期分别以2N、1N和1/2N水平下降低的百分率最小; 非光化学淬灭(NPQ)呈增加的变化趋势, 与对照相比, 分别以2N、1N和1/2N水平下增加的百分率最小。以上结果说明盐胁迫下水稻孕穗后, 供氮水平适量降低有利于减缓叶片光合作用的下降, 提高其抵御盐害能力。     

水稻大粒种质资源和遗传分析

谷粒重量是构成产量的三要素之一, 对提高水稻产量具有重要意义。本文概述了国内外水稻大粒种质资源的现状, 同时对粒重基因遗传分析的研究进展进行了综述。粒重是一个受多基因控制的数量性状, 目前定位的粒重数量性状位点至少达89个、精细定位1个粒重基因gw3.1和１个长粒基因Lk-4(t)以及克隆1个粒重基因GS3, 并在此基础上讨论了粒重在育种上的应用。     

朝鲜木本糖料植物考察

根据中朝两国政府文化合作协定,中国科学院外事局在院内组织了糖槭树考察团(四人)于1984年7月中、下旬赴朝鲜民主主义人民共和国考察,得到朝方自然保护联盟中央委员会及其有关部门、单位的热情接待和大力支持,使这次考察获得圆满成功。现仅就朝鲜木本糖料植物的研究概况报道如下: