Effect of calcification on the mechanical stability of plaque based on a three-dimensional carotid bifurcation model

Background

This study characterizes the distribution and components of plaque structure by presenting a three-dimensional blood-vessel modelling with the aim of determining mechanical properties due to the effect of lipid core and calcification within a plaque. Numerical simulation has been used to answer how cap thickness and calcium distribution in lipids influence the biomechanical stress on the plaque.

Method

Modelling atherosclerotic plaque based on structural analysis confirms the rationale for plaque mechanical examination and the feasibility of our simulation model. Meaningful validation of predictions from modelled atherosclerotic plaque model typically requires examination of bona fide atherosclerotic lesions. To analyze a more accurate plaque rupture, fluid-structure interaction is applied to three-dimensional blood-vessel carotid bifurcation modelling. A patient-specific pressure variation is applied onto the plaque to influence its vulnerability.

Results

Modelling of the human atherosclerotic artery with varying degrees of lipid core elasticity, fibrous cap thickness and calcification gap, which is defined as the distance between the fibrous cap and calcification agglomerate, form the basis of our rupture analysis. Finite element analysis shows that the calcification gap should be conservatively smaller than its threshold to maintain plaque stability. The results add new mechanistic insights and methodologically sound data to investigate plaque rupture mechanics.

Conclusion

Structural analysis using a three-dimensional calcified model represents a more realistic simulation of late-stage atherosclerotic plaque. We also demonstrate that increases of calcium content that is coupled with a decrease in lipid core volume can stabilize plaque structurally.     

An anthropobiological study in Basse Kotto (Central Africa). I. Erythrocyte and sero-genetic markers: an analysis of the genetic differentiation

Phenotype and allele frequencies for hemoglobin types (Hb beta), acid phosphatase (AcP), phosphoglucomutase (PGM1 and PGM2), esterase D (EsD), 6-phosphogluconate dehydrogenase (6-PGD), glyoxalase I (GLO), superoxide dismutase (SOD A), and adenylate kinase (AK) as well as for haptoglobins (Hp), group-specific component (Gc), transferrin (Tf), Gm, and Inv groups and albumin, are reported in the Mbugu, Sango, Yakpa, and Baya Mandja ethnic groups in the Basse Kotto district of the Central African Republic. The total sample size amounts to 133 males and 128 females aged from 16 to 60, unrelated and healthy. A new albumin variant (albumin Mbugu) is described and discussed. The average heterozygosity is high in each group because of a high degree of exogamy. the FST average standardized value among the four groups indicates that the genetic differentiation in Basse Kotto is at level of about 2%. This indicates that the four examined groups might be considered genetically homogeneous, in spite of their different ethnic origins. The genetic distances among the four groups show that only the Baya Mandja are less closely related to the other three groups because of their foreign origin.     

Adaptable gene‐specific dye bias correction for two‐channel DNA microarrays

DNA microarray technology is a powerful tool for monitoring gene expression or for finding the location of DNA‐bound proteins. DNA microarrays can suffer from gene‐specific dye bias (GSDB), causing some probes to be affected more by the dye than by the sample. This results in large measurement errors, which vary considerably for different probes and also across different hybridizations. GSDB is not corrected by conventional normalization and has been difficult to address systematically because of its variance. We show that GSDB is influenced by label incorporation efficiency, explaining the variation of GSDB across different hybridizations. A correction method (Gene‐ And Slide‐Specific Correction, GASSCO) is presented, whereby sequence‐specific corrections are modulated by the overall bias of individual hybridizations. GASSCO outperforms earlier methods and works well on a variety of publically available datasets covering a range of platforms, organisms and applications, including ChIP on chip. A sequence‐based model is also presented, which predicts which probes will suffer most from GSDB, useful for microarray probe design and correction of individual hybridizations. Software implementing the method is publicly available.     

α-Synuclein in central nervous system and from erythrocytes, mammalian cells, and Escherichia coli exists predominantly as disordered monomer

Since the discovery and isolation of α-synuclein (α-syn) from human brains, it has been widely accepted that it exists as an intrinsically disordered monomeric protein. Two recent studies suggested that α-syn produced in Escherichia coli or isolated from mammalian cells and red blood cells exists predominantly as a tetramer that is rich in α-helical structure (Bartels, T., Choi, J. G., and Selkoe, D. J. (2011) Nature 477, 107-110; Wang, W., Perovic, I., Chittuluru, J., Kaganovich, A., Nguyen, L. T. T., Liao, J., Auclair, J. R., Johnson, D., Landeru, A., Simorellis, A. K., Ju, S., Cookson, M. R., Asturias, F. J., Agar, J. N., Webb, B. N., Kang, C., Ringe, D., Petsko, G. A., Pochapsky, T. C., and Hoang, Q. Q. (2011) Proc. Natl. Acad. Sci. 108, 17797-17802). However, it remains unknown whether or not this putative tetramer is the main physiological form of α-syn in the brain. In this study, we investigated the oligomeric state of α-syn in mouse, rat, and human brains. To assess the conformational and oligomeric state of native α-syn in complex mixtures, we generated α-syn standards of known quaternary structure and conformational properties and compared the behavior of endogenously expressed α-syn to these standards using native and denaturing gel electrophoresis techniques, size-exclusion chromatography, and an oligomer-specific ELISA. Our findings demonstrate that both human and rodent α-syn expressed in the central nervous system exist predominantly as an unfolded monomer. Similar results were observed when human α-syn was expressed in mouse and rat brains as well as mammalian cell lines (HEK293, HeLa, and SH-SY5Y). Furthermore, we show that α-syn expressed in E. coli and purified under denaturing or nondenaturing conditions, whether as a free protein or as a fusion construct with GST, is monomeric and adopts a disordered conformation after GST removal. These results do not rule out the possibility that α-syn becomes structured upon interaction with other proteins and/or biological membranes.     

Twenty years of local farmland bird conservation: the effects of management on avian abundance at two UK demonstration sites

Capsule At two demonstration farms, Game & Wildlife Conservation Trust's Loddington Farm in Leicestershire and Royal Society for the Protection of Birds's Hope Farm in Cambridgeshire, targeted management led to much faster increases in avian abundance than in the surrounding regions.

Aims To compare changes in avian abundance at Loddington Farm since 1992 and Hope Farm since 2000, and relate these to regional trends in bird abundance and to the habitat and predator management conducted at the two sites.

Methods Loddington Farm is a mixed arable 292-ha farm in a partially wooded landscape in Leicestershire. It was managed as a shoot from 1993 to 2002, combining habitat management with predator control (stopped in 2002) and winter grain provision (ceased in 2006). Hope Farm comprises a 181-ha mainly arable farm in an open landscape in Cambridgeshire, where habitat management for farmland birds has taken place since 2002. At both sites, breeding bird abundance has been monitored annually. Information on farm management was translated into three variables measuring annual provision of nesting cover, summer food and winter food. The number of Carrion Crow and Magpie territories was used as an index of predator abundance.

Results Avian abundance increased at both farms much faster than within their respective regions. Recovery of priority species was positively correlated with the provision of summer foraging habitats and negatively correlated with the provision of supplementary grain during winter. The latter finding was counterintuitive and may reflect an increase in hedgerow provision that coincided with the cessation of grain provision at both farms. The increase in bird abundance was not sustained at Loddington Farm in the absence of predator control, although it was at Hope Farm where predator densities were markedly lower.

Conclusion The data from Hope Farm suggest that where predator densities are relatively low (<3 Crow?+?Magpie pairs/km² locally, <0.2 Foxes/km² in spring regionally), recovery of farmland birds can be achieved through habitat management alone. Where predator densities are high (>5 corvid pairs/km² and >1.1 foxes/km²), as at Loddington Farm, species recovery, particularly of open-cup nesting species, may require predator control as well as habitat management. Further study is needed to confirm this tentative conclusion from only two sites.     

Post‐breeding movements of northeast Atlantic ivory gull Pagophila eburnea populations

The post‐breeding movements of three northeast Atlantic populations (north Greenland, Svalbard and Franz Josef Land) of the ivory gull Pagophila eburnea, a threatened high‐Arctic sea‐ice specialist, were studied between July and December 2007 using 31 satellite transmitters. After leaving their breeding grounds, all birds first dispersed eastward in August–September, to an area extending from the Fram Strait to the northwestern Laptev Sea (off Severnaya Zemlya). Most returned along the same flyway in October–November, hence describing a loop migration before moving south, off east Greenland. Wintering grounds were reached in December, in southeast Greenland and along the Labrador Sea ice‐edge, where Canadian birds also overwinter. One to two birds from each population however continued eastwards towards a third wintering area in the Bering Strait region, hence demonstrating a bi‐directional migration pattern for the populations and elucidating the origin of the birds found in the north Pacific during winter time. Overall, all birds breeding in the northeast Atlantic region used the same flyways, had similar rates of travel, and showed a peak in migratory activity in November. Though the total length of the main flyway, to the Labrador Sea, is only and at most 7500 km on a straight line, the mean total distance travelled by Greenland birds between July and December was 50 000 km when estimated from hourly rates of travel. Our study presents the first comprehensive and complete picture for the post‐breeding movements of the different ivory gull populations breeding in the northeast Atlantic.     

State‐dependent dynamics of cycles in red grouse abundance

Fluctuating populations are frequently demonstrated to co‐vary in abundance over space, but the dynamics of coupling between populations that gives rise to this synchrony are poorly understood. Synchrony may arise through coupling that is weak and continuous, but in populations that cycle with a characteristic period, synchrony can be maintained through stronger coupling that acts only intermittently. Here, we apply a discrete Markov model that describes the state of a population trajectory to be in one of four possible states. The Markov model reveals the nature of the coupling that gives rise to the weakly synchronous cycles of red grouse abundance. Using time‐series data from 287 populations across the species range in the UK, we show that grouse populations appear mostly uncoupled through time, but that approximately one year in six, “collective forcing events” occur, where populations in a region are forced into synchrony to a significantly greater degree than would be expected if their dynamics proceeded independently. In the absence of these events, synchrony between populations dissipates within ~3 yr. Smaller, low abundance populations tend to make the less probable phase shifts required to synchronize with nearby high abundance populations, suggesting that these low abundance populations are more susceptible to the perturbations responsible for phase shifts than larger populations.