Three-dimensional simulation of obstacle-mediated chemotaxis

Amoeboid cells exhibit a highly dynamic motion that can be directed by external chemical signals, through the process of chemotaxis. Here, we propose a three-dimensional model for chemotactic motion of amoeboid cells. We account for the interactions between the extracellular substances, the membrane-bound proteins, and the cytosolic components involved in the signaling pathway that originates cell motility. We show two- and three-dimensional simulations of cell migration on planar substrates, flat surfaces with obstacles, and fibrous networks. The results show that our model reproduces the main features of chemotactic amoeboid motion. Our simulations unveil a complicated interplay between the geometry of the cell’s environment and the chemoattractant dynamics that tightly regulates cell motion. The model opens new opportunities to simulate the interactions between extra- and intra-cellular compounds mediated by the matrix geometry.     

Nutritional quality modulates trait variability

Background

Trait based functional and community ecology is en vogue. Most studies, however, ignore phenotypical diversity by characterizing entire species considering only trait means rather than their variability. Phenotypical variability may arise from genotypical differences or from ecological factors (e.g., nutritionally imbalanced diet), and these causes can usually not be separated in natural populations. We used a single genotype from a parthenogenetic model system (the oribatid mite Archegozetes longisetosus Aoki) to exclude genotypical differences. We investigated patterns of dietary (10 different food treatments) induced trait variation by measuring the response of nine different traits (relating to life history, morphology or exocrine gland chemistry).

Results

Nutritional quality (approximated by carbon-to-nitrogen ratios) influenced all trait means and their variation. Some traits were more prone to variation than others. Furthermore, the “threshold elemental ratio”- rule of element stoichiometry applied to phenotypic trait variation. Imbalanced food (i.e. food not able to fully meet the nutritional demands of an animal) led to lower trait mean values, but also to a higher variation of traits.

Conclusion

Imbalanced food led not only to lower trait value averages, but also to higher trait variability. There was a negative relationship between both parameters, indicating a direct link of both, average trait levels and trait variation to nutritional quality. Hence, variation of trait means may be a predictor for general food quality, and further indicate trade-offs in specific traits an animal must deal with while feeding on imbalanced diets.

     

Diversity of Entamoeba spp. in African great apes and humans: an insight from Illumina MiSeq high-throughput sequencing

Understanding the complex Entamoeba communities in the mammalian intestine has been, to date, complicated by the lack of a suitable approach for molecular detection of multiple variants co-occurring in mixed infections. Here, we report on the application of a high throughput sequencing approach based on partial 18S rDNA using the Illumina MiSeq platform. We describe, to our knowledge, for the first time, the Entamoeba communities in humans, free-ranging western lowland gorillas and central chimpanzees living in the Dja Faunal Reserve in Cameroon. We detected 36 Entamoeba haplotypes belonging to six haplotype clusters, containing haplotypes possessing high and low host specificity. Most of the detected haplotypes belonged to commensal Entamoeba, however, the pathogenic species (Entamoeba histolytica and Entamoeba nuttalli) were also detected. We observed that some Entamoeba haplotypes are shared between humans and other hosts, indicating their zoonotic potential. The findings are important not only for understanding the epidemiology of amoebiasis in humans in rural African localities, but also in the context of wild great ape conservation.     

Opioid and Notch signaling pathways are reciprocally regulated through miR- 29a and miR-212 expression

Background

The abuse of opioids, such as morphine and phentanyl or other drugs as heroin is a social and health problem that affects an increasing number of people each year. The activation of the mu opioid receptor triggers several molecular changes that alter the expression of diverse genes, including miRNAs. The dysregulation of these molecules could explain some of the developmental alterations that are induced after drug intake. In addition, the Notch signaling cascade has also been related to alterations on these processes.

Effects of the Serotonin 5-HT<Subscript>1A</Subscript> Receptor Biased Agonists,F13714 and F15599, on Striatal Neurotransmitter Levels Following <Emphasis Type="SmallCaps">l</Emphasis>-DOPA Administration in Hemi-Parkinsonian Rats

Peak-dose dyskinesia is associated with the dramatic increase in striatal dopamine levels that follows l-DOPA administration. The ‘false neurotransmitter’ hypothesis postulates that the latter is likely due to an aberrant processing of l-DOPA by serotonergic neurons. In keeping with this hypothesis, two highly selective ‘biased agonists’ of 5-HT_1A receptors—namely F13714 and F15599 (NLX-101)—were recently shown to exhibit exceptionally potent anti-dyskinetic activity without impairing l-DOPA therapeutic properties despite their differential targeting of 5-HT_1A receptor sub-populations. In this study, we investigated whether these two compounds dampened peak l-DOPA-induced dopamine microdialysate levels in the striatum of hemi-parkinsonian rats. Acute administration of either F13714 (0.04 and 0.16 mg/kg i.p.) or F15599 (0.16 and 0.64 mg/kg, i.p.) blunted l-DOPA (2 mg/kg)-induced increases in dopamine microdialysate levels in the denervated striatum (following unilateral injection of 6-OHDA into the medial forebrain bundle). No significant changes were observed on the intact side of the brain. Concurrently, both drugs profoundly reduced striatal serotonin levels on both sides of the brain. In addition, F13714 and F15599, in the presence of l-DOPA, produced a dose-dependent increase in glutamate levels, but this effect was restricted to later time points. These finding support the interpretation that F13714 and F15599 mediate their anti-dyskinetic effects by blunting of the peak in dopamine levels via activation of somatodendritic serotonin 5-HT_1A receptors and the consequent inhibition of serotonergic neurons. This study adds to the growing body of evidence supporting the development of a potent 5-HT_1A receptor agonist for treatment of peak-dose dyskinesia.     

Trends in sightings and population structure of white sharks, <Emphasis Type="Italic">Carcharodon carcharias,</Emphasis> at Seal Island,False Bay,South Africa,and the emigration of subadult female sharks approaching maturity

A long-term sightings and photographic identification (photo-ID) database documented the inter-annual and monthly trends in white shark (Carcharodon carcharias) sightings, sex ratios and life-history stages at Seal Island, False Bay, South Africa, over the period 2004–2012. A total of 1105 sightings were recorded during 171 scientific surveys incorporating 577 h of observation (annual mean 64.10 h, range 23.71–178.69 h). The mean annual sighting rate was 1.87 (range 0.90–3.19) sharks per hour and sighting rates declined over the nine-year study period. It is unknown whether the decline resulted from an actual population decline, or was due to changes in shark distribution or environmental conditions, but it highlights the need for ongoing monitoring at this site. The overall sex ratio was 1.0: 1.0: 2.3 for male: female: unsexed sharks, respectively. Of the 1105 sightings, 39% (n = 433) were photo-ID’d, representing 303 individual sharks (112: 111: 80, male: female: unsexed) and 130 resightings. Of the 303 photo-ID’d sharks, 71% were sighted in a single year only, indicative of transient behaviour. Of the 29% of sharks that were resighted in more than one year, 65% were resighted in the following year, indicating site fidelity to Seal Island, whereas 35% skipped one or more years between encounters, indicative of a temporary absence. The majority (60%) of the photo-ID’d sharks were immature, 32% were subadult and only 8% were mature. No young-of-the-year sharks and few adults were recorded, indicating that Seal Island is not an adult aggregation site, nor a pupping or nursery area, but rather is best described as a seasonal feeding ground. Large females were rarely resighted again after they approached length-at-maturity (≥450 cm TL), whereas some adult males were recorded consistently across years. The emigration of subadult female sharks approaching maturity from Seal Island, combined with the small number of mature sharks of both sexes reported from any South African location, indicate that adult aggregation sites, and thus areas of reproductive importance, still remain unknown.