Electron microscopy study of GroEL chaperonin: Different views of the aggregate appear as a function of cell growth temperature

We have studied two members of the family of morphogenetic factors or chaperonins, the GroEL-like factors from Escherichia coli and Bacillus subtilis, in order to determine the possible structural basis of their related function in promoting the correct and efficient assembly of biological oligomers. The main objective of this work has been to study by transmission electron microscopy the possible changes that these factors may undergo when subjected to a number of different conditions such as changes in temperature in vivo and in pH in vitro. We applied both rotational and multivariate statistical analyses of single particles to images of GroEl-like aggregates from the two bacteria. The most striking result is the finding of two distinct "front views" of these aggregates, from both E. coli and B. subtilis. One view, which has not been described earlier, shows a sixfold symmetry and is most abundant at growing temperatures below 37 degrees C. After heat shock, a view showing seven morphological units becomes dominant. On the basis of our analysis it is clear that GroEL-like morphogenetic factors from two unrelated bacteria such as E. coli and B. subtilis present two distinct views: one sixfold and the other sevenfold. Their relative percentage of appearance is related to the temperature at which the cells were grown and also to the storage conditions (pH).     

Ecology and Physiology of the Competition for Light Between Chlorobium limicola and Chlorobium phaeobacteroides in Natural Habitats

Accurate studies of the pigment composition and isolation in pure cultures of Chlorobiaceae from samples of eight Spanish lakes show that there are two main coexisting groups of green and brown Chlorobium spp. represented respectively by Chlorobium limicola and Chlorobium phaeobacteroides. Laboratory experiments with pure and mixed cultures of the isolated strains show that light quality plays a selective role on the species composition among Chlorobiaceae. This selection depends on the pigment composition which determines the in vivo absorption spectrum of the cells as well as on their ability to adjust the intracellular concentration of light-harvesting pigments to the spectral distribution and energy of light. Correlation analysis performed with field data resulted in significant, but low, correlation coefficients. Nevertheless, they were consistent with laboratory data showing that brown Chlorobiaceae were dominant in deep layers in meromictic lakes, whereas green Chlorobiaceae dominated in layers nearer the surface or underneath plates of Chromatiaceae. The combination of laboratory and field observations stress the role of biological light filtering in determining the species composition among Chlorobiaceae in lakes.     

Forest community structure and composition following containment treatments for the fungal pathogen oak wilt

In temperate oak forests in Ohio, USA, we examined variability in forest communities within containment treatment sites for oak wilt (Bretziella fagacearum), a fungal pathogen lethal to susceptible oak species. Containment treatments included quarantine lines in soil for limiting belowground fungal spread and sanitation cutting of 1–3 mature black oak (Quercus velutina) trees within oak wilt infection patches. At 28 sites, we compared tree structure and understory plant communities across a gradient of 1- to 6-year-old treatments and reference forest (untreated and without evidence of oak wilt). While oak seedlings were abundant, oak saplings (1–10 cm in diameter) were absent. In contrast, many native understory plant community measures were highest in oak wilt treatments. Plant species richness 100 m^?2 doubled in treatments, regardless of age, compared with reference forest. Plant cover increased with treatment age, with 6-year-old treatments exhibiting 5?×?more cover than reference forest. Non-native plants averaged only a small proportion (<?0.12) of cover across treatments and reference forest. Variability in understory communities was mostly predictable using treatment age, tree canopy cover, and geographic location, as 20 of 25 understory measures had at least 72% of their variance modeled. While oak wilt treatments did not facilitate oak regeneration nor many conservation-priority species of open savanna-woodland habitats, the treatments did diversify and increase cover of native understory communities with minimal invasion of non-native plants.

     

Vegetation–environment relationships and ecological species groups of an Arizona Pinus ponderosa landscape, USA

Pinus ponderosa forests occupy numerous topographic and soil complexes across vast areas of the southwestern United States, yet few data exist on species distributions and vegetation–environment relationships for these environmentally diverse landscapes. We measured topography, soils, and vegetation on 66, 0.05-ha plots within a 110,000-ha P. ponderosa landscape in northern Arizona, USA, to discern vegetation–environment relationships on this landscape. We analyzed associations of environmental variables with plant communities and with single-species distributions, and we classified ecological species groups (co-occurring plant species exhibiting similar environmental affinities). Gradients in community composition paralleled gradients in soil texture, available water, organic C, total N, and geographic precipitation patterns. Soil parent material, affected by the presence or absence of volcanic activity, is a primary factor constraining vegetation patterns on this landscape. Using discriminant analysis, we built a model that correctly classified the most important of four grasses (Bouteloua gracilis, Muhlenbergia montana, Sporobolus interruptus, or Festuca arizonica) on 70–80% of plots based on five environmental variables related to soil moisture and resource levels. We also classified 52 of the 271 detected plant species into 18 ecological species groups. Species groups ranged from Phacelia and Bahia groups occupying xeric, volcanic cinder soils low in organic C and total N, to Festuca and Lathyrus groups characterizing moist, loam and silt loam soils. We applied the species groups by estimating P. ponderosa diameter increment in a regression tree using abundances of species groups. The most rapid P. ponderosa diameter growth of 5 mm/year occurred on plots with high importance of the Festuca and Lathyrus groups. Our results on this semi-arid landscape support several general ecological species group principles chiefly developed in temperate regions, and suggest that vegetation–environment research has great potential for enhancing our understanding of P. ponderosa forests occupying vast areas of the southwestern United States.     

The molar extinction coefficient of bacteriochlorophyll e and the pigment stoichiometry in Chlorobium phaeobacteroides

We have determined the molar extinction coefficient of bacteriochlorophyll (BChl) e, the main light-harvesting pigment from brown-coloured photosynthetic sulfur bacteria. The extinction coefficient was determined using pure [Pr,E]BChl e_F isolated by reversed-phase HPLC from crude pigment extracts of Chlorobium (Chl.) phaeobacteroides strain CL1401. The extinction coefficients at the Soret and Q_y bands were determined in four organic solvents. The extinction coefficient of BChl e differs from those of other related Chlorobium chlorophylls (BChl c and BChl d) but is similar to that of chlorophyll b. The determined extinction coefficient was used to calculate the stoichiometric BChl e to BChl a and BChl e to carotenoids ratios in whole cells and isolated chlorosomes from Chl. phaeobacteroides strain CL1401 using the spectrum-reconstruction method (SRCM) described by Naqvi et al. (1997) (Spectrochim Acta A Mol Biomol Spectrosc 53: 2229–2234) . In isolated chlorosomes, BChl a content was ca. 1% of the total BChl content and the stoichiometric ratio of BChl e to carotenoids was 6. In whole cells, however, BChl a content was 3–4%, owing to the presence of BChl a-containing elements, i.e. FMO protein and reaction centre. An average of 5 BChl e molecules per carotenoid was determined in whole cells.     

Population dynamics of phototrophic bacteria in three basins of Lake Banyoles (Spain)

The annual dynamics of the phototrophic bacterial populations developing in the anoxic layers has been monitored in three basins of the northern area of Lake Banyoles (Spain). Although two of the studied basins are meromictic and one is holomictic, chemical properties of the water are almost identical. Therefore, differences in both the spatial and temporal distribution, as well as in the composition of phototrophic bacterial communities, dominated by Chlorobium phaeobacteroides and Chromatium minus, are discussed on the basis of the structural and morphometric characteristics of each basin. Both species showed the same physiological adaptations to light intensity changes by modifying the carotenoid/bacteriochlorophyll ratio. Light reaching the oxic-anoxic boundary appears to be the most important factor controlling the growth of phototrophic bacteria in Lake Banyoles. The oxic-anoxic boundary becomes shallower as summer advances, until enough light is available for bacterial photosynthesis.