Lipase production from a novel thermophilic Bacillus sp.: application of Plackett-Burman design for evaluating culture conditions affecting enzyme formation

A novel thermophilic Bacillus sp. capable of producing lipase was locally isolated. Phylogenetic analysis based on 16SrDNA sequence revealed its close relationship to Bacillus thermoleovorans. Plackett-Burman experimental design was used to evaluate cultural conditions affecting lipase production process. Fifteen variables and four dummy variables were examined in the experimental design. Tween 80, temperature, olive oil, aeration, beef extract and inoculum age were found to be the highest positive significant variables affecting lipase activity, whereas pH and calcium chloride were the highest negative significant variables. Moreover, Tween 80, temperature and olive oil positively affected lipase specific activity. On the other hand, gum arabic, inoculum size and calcium chloride had the highest negative effect on lipase specific activity. This study would improve the further optimization steps on the bioprocess development track.     

Cellulose-decomposing fungi of salt marshes in Egypt

Seventy-five species and three varieties which belong to thirty-four genera were identified from 74 soil samples collected from salt marshes in Egypt. The most frequent fungi wereAspergillus fumigatus, Aspergillus niger, Cladosporium herbarum andAlternatia alternata, followed byAspergillus terreus,Curvularia spicifera andPenicillium notatum. Six genera were of moderate occurrence:Penicillium, Futarium, Curvularia, Rhizopus, Stachybotrys, andChaetomium. Five genera were of low occurrence:Paecilomyces, Oephalosporium, Epicoccum, Mucor andMyrothecium.     

Keratinolytic fungi in Egyptian soils

The frequency of occurrence of keratinolytic fungi in seventy soil samples collected from different sites in Upper Egypt and in the coastal area of the Mediterranean and baited with human and animal hair and pigeon feathers was determined.Twenty-one species in addition to an unidentified species, which belong to sixteen genera were collected.Chrysosporium indicum, C. tropicum, C. keratinophilum andMicrosporum gypseum were the most frequent fungal species recovered from baited soils.The eight soil samples collected from the salt marshes of the coastal Mediterranean area were completely free from any keratinolytic fungi, whereas the sixty-two soil samples collected from cultivated soils contributed a species ranging from one to four species.     

Fungi of wheat and broad-bean straw composts

13 thermophilic genera and 19 species in addition to one variety of each of M. pulchella and H. grisea were collected from wheat and broad-bean straw composts at 45 °C. In wheat and broad-bean, all thermophilic fungi were completely checked between 4–9 days, and 1–8 days composting when the temperature ranged between 58° and 67 °C, and 58 ° and 70 °C respectively, and reappeared, represented by P. duponti, M. albomyces, T. lanuginosus and S. thermophile, after 9 or 10 days composting when the temperature decreased to 51.5° –54 ° C. Wheat and broad-bean straw composts were analysed biochemically to follow the changes in ethanol and diastase soluble, hemicellulose, cellulose and lignin fractions during composting.     

Molecular defense response of mycorrhizal bean plants infected with Rhizoctonia solani

A time course study was conducted to investigate disease development and molecular defense response in common bean (Phaseolus vulgaris L.) plants colonized by a mixture of five arbuscular mycorrhizal (AM) fungi, namely, Glomus mosseae, G. intraradices, G. clarum, Gigaspora gigantea, and Gigaspora margarita, and post-infected with the soil-borne pathogen Rhizoctonia solani. Results showed that pre-colonization of bean plants by AM fungi significantly reduced disease severity and disease incidence. DNA fingerprinting using the differential display technique revealed a genetic polymorphism (86.8 %) in bean plants that resulted from the colonization by AM fungi. Two genetic mechanisms were recorded: (1) switching on of new genes and (2) induction of other active genes, including the defense genes chitinase and β-1,3-glucanase, to a highly expressed state.     

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

Background

Elucidating the process of speciation requires an in-depth understanding of the evolutionary history of the species in question. Studies that rely upon a limited number of genetic loci do not always reveal actual evolutionary history, and often confuse inferences related to phylogeny and speciation. Whole-genome data, however, can overcome this issue by providing a nearly unbiased window into the patterns and processes of speciation. In order to reveal the complexity of the speciation process, we sequenced and analyzed the genomes of 10 wild pigs, representing morphologically or geographically well-defined species and subspecies of the genus Sus from insular and mainland Southeast Asia, and one African common warthog.

Results

Our data highlight the importance of past cyclical climatic fluctuations in facilitating the dispersal and isolation of populations, thus leading to the diversification of suids in one of the most species-rich regions of the world. Moreover, admixture analyses revealed extensive, intra- and inter-specific gene-flow that explains previous conflicting results obtained from a limited number of loci. We show that these multiple episodes of gene-flow resulted from both natural and human-mediated dispersal.

Conclusions

Our results demonstrate the importance of past climatic fluctuations and human mediated translocations in driving and complicating the process of speciation in island Southeast Asia. This case study demonstrates that genomics is a powerful tool to decipher the evolutionary history of a genus, and reveals the complexity of the process of speciation.     

Local Knowledge and Conservation of Seagrasses in the Tamil Nadu State of India

Local knowledge systems are not considered in the conservation of fragile seagrass marine ecosystems. In fact, little is known about the utility of seagrasses in local coastal communities. This is intriguing given that some local communities rely on seagrasses to sustain their livelihoods and have relocated their villages to areas with a rich diversity and abundance of seagrasses. The purpose of this study is to assist in conservation efforts regarding seagrasses through identifying Traditional Ecological Knowledge (TEK) from local knowledge systems of seagrasses from 40 coastal communities along the eastern coast of India. We explore the assemblage of scientific and local traditional knowledge concerning the 1. classification of seagrasses (comparing scientific and traditional classification systems), 2. utility of seagrasses, 3. Traditional Ecological Knowledge (TEK) of seagrasses, and 4. current conservation efforts for seagrass ecosystems. Our results indicate that local knowledge systems consist of a complex classification of seagrass diversity that considers the role of seagrasses in the marine ecosystem. This fine-scaled ethno-classification gives rise to five times the number of taxa (10 species = 50 local ethnotaxa), each with a unique role in the ecosystem and utility within coastal communities, including the use of seagrasses for medicine (e.g., treatment of heart conditions, seasickness, etc.), food (nutritious seeds), fertilizer (nutrient rich biomass) and livestock feed (goats and sheep). Local communities are concerned about the loss of seagrass diversity and have considerable local knowledge that is valuable for conservation and restoration plans. This study serves as a case study example of the depth and breadth of local knowledge systems for a particular ecosystem that is in peril.     

Pterocladia (Rhodophyta) and Ulva (Chlorophyta) as feed supplements for European seabass, Dicentrarchus labrax L., fry

The aim of this study was to evaluate the suitability of two marine macroalgae, Ulva lactuca (Chlorophyta) and Pterocladia capillacea (Rhodophyta), meals as a supplement to enhance the nutritional value of formulated feeds for European seabass Dicentrarchus labrax fry. Seven isoproteic (50 % crude protein), isocaloric (500 Kcal/100 g gross energy) diets containing four levels (0 or control, 5, 10, and 15 %) of either Ulva meal (UM) or Pterocladia meal (PM) were tested. Each diet was fed to triplicate groups of D. labrax fry (initial body weight, 0.23?±?0.02 g for Ulva- and 0.14?±?0.01 g for Pterocladia-fed fish), to apparent visual satiety for 8 weeks. The results indicated that feeding seabass at 5 % UM or PM level (U₅ and P₅ diets) produced the best growth, feed utilization, nutrient retention, and survival rates among all the dietary groups. Feeding fish with a 5 % PM-added diet has also improved stress response after a 5-min air exposure test, prior to the termination of the feeding trial. These findings suggest that both Pterocladia and Ulva meals could be potentially used as an additional feed component (at 5 %) for enhancement of seabass D. labrax fry performance, nutrients composition, and stress resistance especially when subjected to transportation from hatchery to weaning ponds/tanks.     

Diacylglycerols interact with the L2 lipidation site in TRPC3 to induce a sensitized channel state

Coordination of lipids within transient receptor potential canonical channels (TRPCs) is essential for their Ca²⁺ signaling function. Single particle cryo‐EM studies identified two lipid interaction sites, designated L1 and L2, which are proposed to accommodate diacylglycerols (DAGs). To explore the role of L1 and L2 in TRPC3 function, we combined structure‐guided mutagenesis and electrophysiological recording with molecular dynamics (MD) simulations. MD simulations indicate rapid DAG accumulation within both L1 and L2 upon its availability within the plasma membrane. Electrophysiological experiments using a photoswitchable DAG‐probe reveal potentiation of TRPC3 currents during repetitive activation by DAG. Importantly, initial DAG exposure generates a subsequently sensitized channel state that is associated with significantly faster activation kinetics. TRPC3 sensitization is specifically promoted by mutations within L2, with G652A exhibiting sensitization at very low levels of active DAG. We demonstrate the ability of TRPC3 to adopt a closed state conformation that features partial lipidation of L2 sites by DAG and enables fast activation of the channel by the phospholipase C‐DAG pathway.