Late Ordovician–Early Silurian facies development and environmental changes in the Subpolar Urals

The continuous Upper Ashgill–Sheinwoodian carbonate succession in the most eastern Kozhym River area in the Subpolar Urals comprises the Yaptikshor (Rawtheyan), Kamennaya baba (Hirnantian), Ruchej and Manyuku (Llandovery–?Sheinwoodian) formations. The facies of the deep subtidal Yaptikshor Fm. mark an abrupt sea‐level rise following emergence of the Bad’ya reef (Rawtheyan). Carbonate breccias at the base of the Kamennaya baba Fm. correlate with the beginning of the Hirnantian glaciation and change upwards towards the Ordovician–Silurian boundary with the development of light‐grey massive boundstone/packstone shoal deposits. An abrupt change in facies to the Rhuddanian–Aeronian Ruchej Fm. continental slope environment marked the start of a long‐term sea‐level rise. The uppermost Aeronian–?Sheinwoodian is represented by submarine canyon carbonate conglobreccias of the Manyuku Fm. unconformably underlying the Balban’yu reef. The rapid facies changes at the base of the Hirnantian and at the Ordovician–Silurian boundary were of global eustatic origin. In contrast, the abrupt changes in the Rawtheyan and the formation of the Manyuku Fm. conglobreccias were of local or regional origin associated with tectonics. They were followed by the start of a regional transgression (Yaptikshor Fm.) and a global transgression marked by the initiation of the Balban’yu Reef in the Sheinwoodian.     

Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation

The frog family Bufonidae is a large group distributed throughout all major land masses of die world except the polar regions. Although the monophyly of Bufonidae is strongly supported, phylogenetic relationships within the group are not well understood. Because of apparently large differences in rates of morphological and behavioral evolution, speciation, and geographical range, Bufonidae raises intriguing macroevolutionary questions. For example, one might imagine that the group's evolutionary history is congruent (1) with its morphological and behavioral character distribution, or (2) with its current geographical positioning. To examine phylogenetic relationships within Bufonidae and test these alternate hypotheses, DNA sequence data were obtained from four genes, three mitochondrial and one nuclear, from populations throughout the geographic and taxonomic breadth of the family. Phylogenetic analyses of these sequences by several methods support several hypotheses of relationships, notably: (1) contrary to the previous hypotheses of some workers, Bufo is not the basal, wildly paraphyletic genus of Bufonidae, although it is also not monophyletic, (2) the basal splits within bufonids separate South American 'atelopodid'genera from all other bufonids, although the monophyly of the 'atelopodids' is not supported, and (3) the most highly supported clades within the family generally correspond to small- to medium-sized, geographically and morphologically homogeneous groups. These trees are used to test the two alternate macroevolutionary hypotheses, and, while neither hypothesis fully explains the observed phylogenetic relationships, these relationships are broadly consistent with both character distribution and geography at particular levels.     

PHYTOALEXIN DEFICIENT 4 affects reactive oxygen species metabolism,cell wall and wood properties in hybrid aspen (Populus tremula L. × tremuloides)

The PHYTOALEXIN DEFICIENT 4 (PAD4) gene in Arabidopsis thaliana (AtPAD4) is involved in the regulation of plant – pathogen interactions. The role of PAD4 in woody plants is not known; therefore, we characterized its function in hybrid aspen and its role in reactive oxygen species (ROS)‐dependent signalling and wood development. Three independent transgenic lines with different suppression levels of poplar PAD expression were generated. All these lines displayed deregulated ROS metabolism, which was manifested by an increased H₂O₂ level in the leaves and shoots, and higher activities of manganese superoxide dismutase (MnSOD) and catalase (CAT) in the leaves in comparison to the wild‐type plants. However, no changes in non‐photochemical quenching (NPQ) between the transgenic lines and wild type were observed in the leaves. Moreover, changes in the ROS metabolism in the pad4 transgenic lines positively correlated with wood formation. A higher rate of cell division, decreased tracheid average size and numbers, and increased cell wall thickness were observed. The results presented here suggest that the Populus tremula × tremuloides PAD gene might be involved in the regulation of cellular ROS homeostasis and in the cell division – cell death balance that is associated with wood development.     

Long‐term moderate nutrient inputs enhance autotrophy in a forested Mediterranean stream

1. The effects of long‐term nutrient addition at moderate levels were examined in the food web of a forested Mediterranean stream. Basal concentrations of N and P were increased twofold (to c. 750 μg N) and threefold (to c. 30 μg P) from ambient concentrations in an experimental reach. Variations in the abundance of microbes (bacteria and algae), meiofauna and macrofauna, microbial processing of organic matter (extracellular enzyme activities) and stoichiometry of biofilms and invertebrates were compared to an upstream control reach during 4 years of artificial nutrient enhancement. 2. Effects were faster in the bacterial compartment but more substantial in the algal compartment. Epilithic algal biomass doubled in the enriched section jointly triggered by nutrients and increased light irradiance in winter and early spring. Only a few animal groups reacted to the enrichment, including the meiofaunal Copepoda, linked to their high use of enriched FPOM, and macrofaunal grazers (Ancylus), which followed the large algal biomass increase. 3. The enrichment caused biofilm phosphatase activity to decrease, while activities related to the use of algal‐related materials (peptidase, β‐glucosidase) increased. Enzymatic activities related to the use of allochthonous organic matter showed only minor and episodic increases. 4. Changes in stoichiometric ratios were apparent in the epilithic compartment, but not in the sand sediment or in the FPOM. Increases in P content were delayed for 9 months in epilithic biofilms and for nearly 2 years in the case of N. 5. After 2 years of enrichment, the flatworm Schmidtea polychroa (predator), oligochaetes (detritivore) and tadpoles of Bufo bufo (grazer) showed higher per cent N. 6. Enrichment effects were produced in spite of flow cessations that occurred commonly in summer. The results show that forested streams subjected to sustained (though minor) nutrient enrichment changed aspects of their biological structure and metabolism and that changes were especially favoured by periods when light was not limiting.     

Sexual selection as a promoter of population divergence in male phenotypic characters: a study on mainland and islet lizard populations

Sexual selection is often viewed as a promoter of population divergence, although some forms of sexual selection could rather hamper divergence. In the present study, we investigated whether sexual selection promotes divergence in sexually‐selected traits. We studied population variation in sexual selection in relation to colour morph and body size in islet and mainland populations of the Skyros wall lizard (Podarcis gaigeae). Females were most likely to mate with orange‐throated males with small body sizes, and male body size and coloration were therefore subject to correlational sexual selection. By contrast, male mating probabilities were not affected by any female phenotypic character. We also found variation in a female resistance trait (escape propensity), with females being more prone to escape when exposed to males from other habitats. Sexual selection could potentially affect the frequencies of throat colour morphs in this species by favouring orange‐throated males of small body size, although there was no evidence of sexual selection for local mates or rare phenotypes. The results obtained in the present study thus do not support a role for sexual selection as a promoter of population divergence in this species. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 106 , 374–389.     

Culture senescence and abscisic acid induce saporin production in cultured roots of Saponaria officinalis

The presence and variation of activity of the type 1 ribosome-inactivating protein saporin has been evaluated in cultured roots of the soapwort Saponaria officinalis . Results from western analysis and in vitro protein synthesis inhibition indicate that saporin production is increased in senescing cultures, reaching a maximum value during the late stationary phase. Accordingly, cultures treated with the senescence-related hormone abscisic acid show a significant increase in saporin activity, independently from the culture growth phase. Stress conditions, such as the presence of hydrogen peroxide in the culture medium, had no effect on the modulation of enzymatic activity. The putative regulation of saporin production by abscisic acid and its possible role in accomplishing the ageing programme is discussed.     

Height-related growth declines in ponderosa pine are not due to carbon limitation

Decreased gas exchange as trees grow tall has been proposed to explain age-related growth declines in trees. We examined changes of mobile carbon stores (starch, sugars and lipids) with tree height in ponderosa pine ( Pinus ponderosa ) at two sites differing in water availability, and tested the following hypotheses: (1) carbon supply does not become increasingly limited as trees grow tall; rather, the concentration of mobile carbon compounds increases with tree height reflecting greater reductions of carbon sink activities relative to carbon assimilation; and (2) increases of stored mobile carbon compounds with tree height are greater in drier sites. Height-related growth reductions were associated with significant increases of non-structural carbohydrates (NSC) and lipid concentrations in all tissues in the upper canopy and of NSC in the bole. Lipid concentrations in the bole decreased with tree height, but such decrease is not necessarily inconsistent with non-limiting carbon supply in tall trees. Furthermore, we found stronger increases of mobile carbon stores with tree height at the dry site relative to the moist site. Our results provide first direct evidence that carbon supply does not limit growth in tall trees and that decreases of water availability might negatively impact growth processes more than net-photosynthesis.     

Effects of N : P loading ratios on phytoplankton community composition, primary production and N fixation in a eutrophic lake

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