Phylogeographic structure and mitochondrial DNA variation in true lemmings (Lemmus) from the Eurasian Arctic

The geographic pattern of mtDNA variation in lemmings from 13 localities throughout the Eurasian Arctic was studied by using eight restriction enzymes and sequencing of the cytochrome b region. These data are used to reveal the vicariant history of Lemmus , and to examine the effect of the last glaciation on mtDNA variation by comparing diversity in formerly glaciated areas to the diversity in non-glaciated areas. Phylogenetic congruence across different Arctic taxa and association between observed discontinuities, and probable Pleistocene barriers, suggest that glacial-interglacial periods were crucial in the vicariant history of Lemmus. Differences in amount of divergence (2.1–9.1%) across different historical barriers indicate chronologically separate vicariant events during the Quaternary. Populations from a formerly glaciated area are no less variable than those in the non-glaciated area. Regardless of glaciation history, no population structure and high haplotype diversity were found within geographic regions. The lack of population structure indicates that populations with high ancestral haplotype diversity shifted their distribution during the Holocene, and that lemmings tracked a changing environment during the Quaternary without reduction of effective population size.     

Unisexual rock lizard might be outcompeting its bisexual progenitors in the Caucasus

We compared the distributions, abundances and ecological requirements of parthenogenetic lizard Darevskia ‘dahli’ and its bisexual progenitors, D. portschinskii and D. mixta, in Georgia. We developed a regression model relating the species abundances with the distribution of climates. Darevskia portschinskii lives in warmer and drier climates than D. mixta; D. ‘dahli’ has the intermediate requirements. Temperature is more important than humidity for D. portschinskii, humidity is more important for D. mixta and both temperature and humidity are important for D. ‘dahli’. Suitable habitats of all three species overlap broadly; however, the observed ranges partly overlap only for D. ‘dahli’ and D. portschinskii. The observed abundance of each species, related to its predicted abundance, is lower at the sites with potential competitors. Darevskia ‘dahli’ occupies a higher proportion of the suitable habitats and has higher abundances than the progenitor species. Competition with D. ‘dahli’ is an important factor determining current distribution pattern of D. portschinskii and D. mixta. The parthenogen is a stronger competitor than the bisexual breeders and potential advantages of the bisexual reproduction remain unrealized in the given temporal and spatial scale. To explain domination of bisexually breeding lizards on the global scale, considering climate changes in geological timescale is necessary. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 101 , 447–460.     

Invalidation of Hyperamoeba by Transferring its Species to Other Genera of Myxogastria

ABSTRACT. The genus Hyperamoeba Alexeieff, 1923 was established to accommodate an aerobic amoeba exhibiting three life stages—amoeba, flagellate, and cyst. As more species/strains were isolated, it became increasingly evident from small subunit (SSU) gene phylogenies and ultrastructure that Hyperamoeba is polyphyletic and its species occupy different positions within the class Myxogastria. To pinpoint Hyperamoeba strains within other myxogastrid genera we aligned numerous myxogastrid sequences: whole small subunit ribosomal (SSU or 18S rRNA) gene for 50 dark‐spored (i.e. Stemonitida and Physarida) Myxogastria (including a new “Hyperamoeba”/Didymium sequence) and a ～400‐bp SSU fragment for 147 isolates assigned to 10 genera of the order Physarida. Phylogenetic analyses show unambiguously that the type species Hyperamoeba flagellata is a Physarum (Physarum flagellatum comb. nov.) as it nests among other Physarum species as robust sister to Physarum didermoides. Our trees also allow the following allocations: five Hyperamoeba strains to the genus Stemonitis; Hyperamoeba dachnaya, Pseudodidymium cryptomastigophorum, and three other Hyperamoeba strains to the genus Didymium; and two further Hyperamoeba strains to the family Physaridae. We therefore abandon the polyphyletic and redundant genus Hyperamoeba. We discuss the implications for the ecology and evolution of Myxogastria, whose amoeboflagellates are more widespread than previous inventories supposed, being now found in freshwater and even marine environments.     

Excising stem samples underwater at native tension does not induce xylem cavitation

Xylem resistance to water stress‐induced cavitation is an important trait that is associated with drought tolerance of plants. The level of xylem cavitation experienced by a plant is often assessed as the percentage loss in conductivity (PLC) at different water potentials. Such measurements are constructed with samples that are excised underwater at native tensions. However, a recent study concluded that cutting conduits under significant tension induced cavitation, even when samples were held underwater during cutting. This resulted in artificially increased PLC because of what we have termed a ‘tension‐cutting artefact’. We tested the hypothesized tension‐cutting artefact on five species by measuring PLC at native tension compared with after xylem tensions had been relaxed. Our results did not support the tension‐cutting artefact hypothesis, as no differences were observed between native and relaxed samples in four of five species. In a fifth species (Laurus nobilis), differences between native and relaxed samples appear to be due to vessel refilling rather than a tension‐cutting effect. We avoided the tension‐cutting artefact by cutting samples to slightly longer than their measurement length and subsequent trimming of at least 0.5 cm of sample ends prior to measurement.     

Genetic diversity of Philaenus spumarius and P. tesselatus (Hemiptera,Aphrophoridae): implications for evolution and taxonomy

The meadow spittlebugs Philaenus spumarius and P. tesselatus are closely related taxa with uncertain taxonomic position in the light of previous morphological, ecological, cytological and molecular research. Despite morphological homogeneity of P. spumarius (with the exception of high colour and pattern polymorphism) across its wide Holarctic range, it is possible that additional taxa (species or subspecies) exist. Philaenus spumarius is a potentially important pest in parts of its range where it was introduced. We used DNA markers to describe the genetic diversity of P. spumarius and P. tesselatus and to verify the taxonomic status of P. tesselatus and remote populations of the former species. The mitochondrial (cytochrome B) data showed that there are two main groups encompassing a northeastern (Asia and north‐central Europe) and a southwestern (Mediterranean area and western Europe, including North American specimens) clade. According to the elongation factor‐1α gene, there are three main clades: northeastern (Eurasiatic clade, E1), southeastern (east Mediterranean – Caucasus clade, E2) and southwestern (Iberian clade, E3). These two or three mitochondrial and nuclear clades could be considered as separate taxonomic units. On the other hand, all studied individuals of both species possessed the same internal transcribed spacer 2 haplotype. American specimens most probably originated from some western European populations. All studied specimens of P. tesselatus belong to the southwestern clade and western Mediterranean cluster. Therefore, together with cytological data, its species status is doubtful. To definitively solve the taxonomic status of P. tesselatus and populations of P. spumarius, further research using more samples and more genetic markers are needed.     

Studies on the Nitrogen Metabolism in Ectomycorrhizae

Free and bound amino acids in the mycorrhizal and nonmycorrhizal root systems of Pinus nigra Arnold and Corylus avellna L. grown under semi-natural conditions were analyzed through automatic amino acid analyzers. Tuber brumale Vitt. and T. melanosporum Vitt. were the respective fungal symbionts. Arginine and citrulline were found to accumulate in large quantities in the free pool of the uninoculated P. nigra and C. avellana root systems respectively. In the mycorrhizal root systems these substances decreased in their levels with a parallel increase in the concentrations of glutamine and asparagine. Implications of these changes are discussed with reference to ectomycorrhizae. In general the majority of the identified free amino acids were found in larger concentrations in both the types of mycorrhizal root systems. Results obtained suggested that this may not be due to proteolysis but due to increased biosynthesis. Possible interrelationships in ectomycorrhizal root systems with reference to nitrogen metabolism are presented in the form of a scheme.     

Predation on bellerophontiform molluscs in the Palaeozoic

Shell repair assumed to result from failed predation is documented in 66 specimens of Ordovician-Carboniferous bellerophontiform tergomyan and gastropod molluscs to examine the relationship between the distribution and appearance of injuries, shell morphology and the internal anatomy of the molluscs, as well as the attack strategies of the presumed predators. Furthermore, the distribution of repaired injuries from failed attacks along the apertural margin as a reflection of the nature of the margin and emarginations is investigated. Bellerophontiform molluscs are ideal for this study because of their distinctive isostrophic morphology and the possibility to directly compare broad and narrow conchs with either deep or shallow medial emarginations. The results show that taxa with a deep medial emargination in the form of a slit have significantly more medial injuries than lateral ones. Near-equal frequencies of lateral and medial injuries in specimens with a shallow emargination (slit or sinus) suggest random distribution. Shell form (narrow or broad) does not exert overall control on the distribution of injuries except, perhaps, in some broad explanate shells with an insignificant medial emargination. While this suggests that it is the type of medial emargination that governs distribution of injuries in these forms, it is not clear if this is a result of passive selection due to structural geometry or preferential targeting by predators (i.e. site-specific mode of attack). Predation strategies on bellerophontiform molluscs thus seem to be dependent on the morphological features of the shells rather than their interpretation as tergomyan or gastropod.     

Population structure in the barn swallow,Hirundo rustica: a comparison between neutral DNA markers and quantitative traits

Local adaptation to variable environments can generate clinal variation in morphological traits. Alternatively, similar patterns of clinal variation may be generated simply as a result of genetic drift/migration balance. Teasing apart these different processes is a continuing focus in evolutionary ecology. We compare genetic differentiation at molecular loci and quantitative traits to analyse the effect of these different processes in a morphological latitudinal cline of the barn swallow, Hirundo rustica, breeding across Europe. The results obtained show no structuring at neutral microsatellite loci, which contrasts with positive structuring at five quantitative morphometric traits. This supports the hypothesis that the observed morphometric cline in barn swallows is the result of selection acting in a spatially heterogeneous environment. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 99 , 306–314.