Molecules,morphology, missing data and the phylogenetic position of a recently extinct madtom catfish (Actinopterygii: Ictaluridae)

Taxa missing large amounts of data pose challenges that may hinder the recovery of a well‐resolved, accurate phylogeny and leave questions surrounding their phylogenetic position. Systematists commonly have to contend with one or two species in a group for which there is little or no material available suitable for recovering molecular data. It is unclear whether these taxa can be better placed using analyses based on morphological data only, or should be included in broader analyses based on both morphological and molecular data. The extinct madtom catfish Noturus trautmani is known from few specimens for which molecular data are unavailable. We included this taxon in parsimony and Bayesian analyses of relationships of madtom catfishes based on a combination of morphological and molecular data. Results indicate that using a combination of morphological and molecular data does a better job at providing a phylogenetic placement for N. trautmani than morphology alone, even though it is missing all of its molecular characters. We provide a novel hypothesis of relationships among Noturus species and recommendations for classification within the group. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 60–75.     

REVISION OF THE ARCHOSAUROMORPH REPTILE TRILOPHOSAURUS, WITH A DESCRIPTION OF THE FIRST SKULL OF TRILOPHOSAURUS JACOBSI, FROM THE UPPER TRIASSIC CHINLE GROUP, WEST TEXAS, USA

Abstract: The first abundant, well‐preserved fossils of the unusual archosauromorph reptile Trilophosaurus jacobsi Murry are from an Upper Triassic bonebed in the lowermost Trujillo Formation of the Chinle Group in Borden County, Texas. A nearly complete left side of the skull and incomplete but articulated mandible of a juvenile individual demonstrate that Trilophosaurus jacobsi Murry is referable to Trilophosaurus, so the putative procolophonid genus Chinleogomphius is a junior objective synonym of Trilophosaurus. Features of T. jacobsi that diagnose it from T. buettneri include asymmetrical, tricuspate teeth in which the central cusp is taller than the marginal cusp, polygonal in cross‐section and displaced slightly lingually; the lingual cusp is low, transversely broadened and anteroposteriorly compressed; teeth with prominent cingula along the mesial and distal margins; and paired sagittal (parasagittal) crests composed of portions of the postfrontals and the parietals, as well as a relatively broad skull roof between the supratemporal fenestrae. We also re‐illustrate and re‐describe the holotypes of both Trilophosaurus buettneri Case and T. jacobsi Murry. T. jacobsi is primarily Adamanian in age, and the lowest occurrence of T. jacobsi is stratigraphically above that of T. buettneri. Therefore, T. buettneri is an Otischalkian–Adamanian index taxon, and T. jacobsi is an Adamanian–?earliest Revueltian index taxon. Trilophosaurus teeth are readily identifiable to species and therefore identifiable as isolated fossils.     

The Effects of Temperature on 86Rb Uptake by Two Species of Chlamydomonas (Chlorophyta, Chlorophyceae)

⁸⁶Rb uptake was examined in two species of unicellular greenalgae, Chlamydomonas nivalis isolated from snow, and a cellwall-less mutant of the temperate freshwater Chlamydomonas reinhardii.In C. reinhardii cells grown at 20°C and cooled rapidlyto 0°C, ⁸⁶Rb uptake was abolished. Cells cooled rapidlyto –5°C in the absence of ice accumulated ⁸⁶Rb veryrapidly but the time course of this uptake suggested non-selectiveaccumulation through a damaged plasmalemma. Cells grown at 8°Cwere viable, able to divide and motile; they showed no signsof cold-shock and ⁸⁶Rb uptake, albeit slow, was measurable at–5°C in the absence of extracellular ice. Cells ofC. nivalis grown at 20°C were damaged at sub-zero temperaturesalthough they did show an enhanced ⁸⁶Rb uptake at 0°C. Cellsgrown at 5°C were able to accumulate ⁸⁶Rb from media undercooledto -5°C in the absence of extracellular ice, and again showedenhanced uptake at 0°C. The process of acclimation to lowtemperature appears to differ in the two species. Key words: Chlamydomonas, temperature, ⁸⁶Rb uptake, membrane     

Semiempirical modeling of abiotic and biotic factors controlling ecosystem respiration across eddy covariance sites

In this study we examined ecosystem respiration (R_ECO) data from 104 sites belonging to FLUXNET, the global network of eddy covariance flux measurements. The goal was to identify the main factors involved in the variability of R_ECO: temporally and between sites as affected by climate, vegetation structure and plant functional type (PFT) (evergreen needleleaf, grasslands, etc.). We demonstrated that a model using only climate drivers as predictors of R_ECO failed to describe part of the temporal variability in the data and that the dependency on gross primary production (GPP) needed to be included as an additional driver of R_ECO. The maximum seasonal leaf area index (LAI_MAX) had an additional effect that explained the spatial variability of reference respiration (the respiration at reference temperature T_ref=15 °C, without stimulation introduced by photosynthetic activity and without water limitations), with a statistically significant linear relationship (r²=0.52, P<0.001, n=104) even within each PFT. Besides LAI_MAX, we found that reference respiration may be explained partially by total soil carbon content (SoilC). For undisturbed temperate and boreal forests a negative control of total nitrogen deposition (N_depo) on reference respiration was also identified. We developed a new semiempirical model incorporating abiotic factors (climate), recent productivity (daily GPP), general site productivity and canopy structure (LAI_MAX) which performed well in predicting the spatio‐temporal variability of R_ECO, explaining >70% of the variance for most vegetation types. Exceptions include tropical and Mediterranean broadleaf forests and deciduous broadleaf forests. Part of the variability in respiration that could not be described by our model may be attributed to a series of factors, including phenology in deciduous broadleaf forests and management practices in grasslands and croplands.     

Seasonal phenotypic plasticity of wing melanisation in the cabbage white butterfly, Pieris rapae L. (Lepidoptera: Pieridae)

Abstract.  1. Effective thermoregulation is crucial for the fitness of small flying insects. Phenotypic plasticity of the ventral hindwing of pierid butterflies is widely recognised as adaptive for effective thermoregulation. Butterflies eclosing in cooler environments have more heavily melanised wings that absorb solar radiation, thus allowing flight under these cool conditions.
2. Many pierids also exhibit phenotypic plasticity of dorsal forewing melanisation but in this case, cooler environments reduce melanisation. It has been hypothesised that this plasticity is also adaptive because it increases solar reflection from the wing surfaces onto the body in certain basking postures.
3. The degree of seasonal variation in ventral hindwing and dorsal forewing melanisation of wild-caught Pieris rapae was quantified to determine if it shows patterns of plasticity similar to that documented for other Pieris species.
4. Male wing melanisation on both wing surfaces shows the characteristic seasonal, adaptive plasticity. However, only some dorsal forewing pattern elements of females conformed to the predictions of the hypothesis of adaptive dorsal forewing melanisation. Sexual dimorphism of wing pattern plasticity may result from, and/or affect, sexual dimorphism of behaviour and physiology of these butterflies.     

Landscape genetic structure of coastal tailed frogs (Ascaphus truei) in protected vs. managed forests

Habitat loss and fragmentation are the leading causes of species’ declines and extinctions. A key component of studying population response to habitat alteration is to understand how fragmentation affects population connectivity in disturbed landscapes. We used landscape genetic analyses to determine how habitat fragmentation due to timber harvest affects genetic population connectivity of the coastal tailed frog (Ascaphus truei), a forest-dwelling, stream-breeding amphibian. We compared rates of gene flow across old-growth (Olympic National Park) and logged landscapes (Olympic National Forest) and used spatial autoregression to estimate the effect of landscape variables on genetic structure. We detected higher overall genetic connectivity across the managed forest, although this was likely a historical signature of continuous forest before timber harvest began. Gene flow also occurred terrestrially, as connectivity was high across unconnected river basins. Autoregressive models demonstrated that closed forest and low solar radiation were correlated with increased gene flow. In addition, there was evidence for a temporal lag in the correlation of decreased gene flow with harvest, suggesting that the full genetic impact may not appear for several generations. Furthermore, we detected genetic evidence of population bottlenecks across the Olympic National Forest, including at sites that were within old-growth forest but surrounded by harvested patches. Collectively, this research suggests that absence of forest (whether due to natural or anthropogenic changes) is a key restrictor of genetic connectivity and that intact forested patches in the surrounding environment are necessary for continued gene flow and population connectivity.     

Village Drift and Riverine Settlement: Modeling Akimel O'odham Land Use

Regular unscheduled movements of rancherías within a confined area or settlement district result in the phenomenon described as "village drift," a process whereby a settlement may change its location gradually by several kilometers over a period of years. This article presents a model of village drift based on data acquired from recent archaeological and geomorphological field studies and archival research on the Akimel O'odham, the Gila River Pima of south-central Arizona. The model provides an excellent example of human ecodynamics---an emerging landscape perspective that emphasizes the coevolution of humans and their ecosystem---with implications for understanding prehistoric and historic settlement in desert riverine environments.     

Weather-Related Indices of Autumn– Winter Dabbling Duck Abundance in Middle North America

ABSTRACT Research on effects of key weather stimuli influencing waterfowl migration during autumn and winter is limited. We investigated relationships between changes in relative abundances of mallard (Anas platyrhynchos) and other dabbling ducks (Anas spp.) and weather variables at midlatitude locations in North America. We used waterfowl survey data from Missouri Conservation Areas and temperature and snow cover data from the Historical Climatology Network to evaluate competing models to explain changes in relative abundance of ducks in Missouri, USA, during autumn-winter, 1995–2005. We found that a cumulative weather severity index model (CumulativeWSI; calculated as mean daily temp - degrees C + no. of consecutive days with mean temp ≤ 0° C + snow depth + no. of consecutive days with snow cover) had the greatest weight of evidence in explaining changes in relative abundance of ducks. We concluded the CumulativeWSI reflected current and cumulative effects of ambient temperatures on energy expenditure by ducks, and snow cover and wetland icing, on food availability for ducks. The CumulativeWSI may be useful in determining potential changes in autumn-winter distributions of North American waterfowl given different climate change projections and associated changes in habitat conservation needs. Future investigations should address interactions between CumulativeWSI and landscape habitat quality, regional waterfowl populations, hunter harvest, and other anthropogenic influences to increase understanding of waterfowl migration during autumn-winter.     

Enzymic Activities Associated with the Ability of Aerial and Submerged Forms of Littorella uniflora (L.) Aschers to perform CAM

ABSRACT: Groenhof, A. C, Smirnoff, N. and Bryant, J. A. 1988. Enzymicactivities associated with the ability of aerial and submergedforms of Littorella uniflora (L.) Aschers to perform CAM.—J.exp. Bot. 39: 353-361. The submerged form of Littorella uniflora shows a full CAM modeof photosynthesis as shown by diel acid fluctuations and elevatedactivities (in comparison to non-submerged leaves) of the enzymesphosphoenolpyruvate carboxylase (PEPC) and NADP-malic enzyme.Non-submerged plants exhibit no diel fluctuations of acidityand no changes in activity of NADP-malic enzyme or PEPC. PEPCactivity is low and NADP-malic enzyme is not detectable. Furthercharacterization of PEPC extracted from submerged plants duringthe light and dark periods of a diel cycle shows that the enzymeextracted in the dark is more active. In addition, the enzymeshows a decrease in K_m (PEP) and an increase in V_max in thepresence of glucose-6-phosphate, whilst in the presence of malateK_m (PEP) is increased and V_max decreased; this response to malateis only observed in the light and at pH 7.2. Molecular weightdeterminations using a Sephacryl S-300 column show that theenzyme extracted from plants during the dark period has an apparentmol. wt. of 375 KDa and the enzyme extracted from plants duringthe light period has an apparent mol. wt. of 307 KDa. Key words: Littorella uniflora (shoreweed), Crassulacean acid metabolism, PEP carboxylase, malic enzyme     

Ranking Alaska Moose Nutrition: Signals to Begin Liberal Antlerless Harvests

Abstract: We focused on describing low nutritional status in an increasing moose (Alces alces gigas) population with reduced predation in Game Management Unit (GMU) 20A near Fairbanks, Alaska, USA. A skeptical public disallowed liberal antlerless harvests of this moose population until we provided convincing data on low nutritional status. We ranked nutritional status in 15 Alaska moose populations (in boreal forests and coastal tundra) based on multiyear twinning rates. Data on age-of-first-reproduction and parturition rates provided a ranking consistent with twinning rates in the 6 areas where comparative data were available. Also, short-yearling mass provided a ranking consistent with twinning rates in 5 of the 6 areas where data were available. Data from 5 areas implied an inverse relationship between twinning rate and browse removal rate. Only in GMU 20A did nutritional indices reach low levels where justification for halting population growth was apparent, which supports prior findings that nutrition is a minor factor limiting most Alaska moose populations compared to predation. With predator reductions, the GMU 20A moose population increased from 1976 until liberal antlerless harvests in 2004. During 1997-2005, GMU 20A moose exhibited the lowest nutritional status reported to date for wild, noninsular, North American populations, including 1) delayed reproduction until moose reached 36 months of age and the lowest parturition rate among 36-month-old moose (29%, n = 147); 2) the lowest average multiyear twinning rates from late-May aerial surveys (x = 7%, SE = 0.9%, n = 9 yr, range = 3-10%) and delayed twinning until moose reached 60 months of age; 3) the lowest average mass of female short-yearlings in Alaska (x̄ = 155 ± 1.6 [SE] kg in the Tanana Flats subpopulation, up to 58 kg below average masses found elsewhere); and 4) high removal (42%) of current annual browse biomass compared to 9-26% elsewhere in boreal forests. When average multiyear twinning rates in GMU 20A (sampled during 1960-2005) declined to <10% in the mid- to late 1990s, we began encouraging liberal antlerless harvests, but only conservative annual harvests of 61-76 antlerless moose were achieved during 1996-2001. Using data in the context of our broader ranking system, we convinced skeptical citizen advisory committees to allow liberal antlerless harvests of 600-690 moose in 2004 and 2005, with the objective of halting population growth of the 16,000-17,000 moose; total harvests were 7-8% of total prehunt numbers. The resulting liberal antlerless harvests served to protect the moose population's health and habitat and to fulfill a mandate for elevated yield. Liberal antlerless harvests appear justified to halt population growth when multiyear twinning rates average ≤10% and ≥1 of the following signals substantiate low nutritional status: <50% of 36-month-old moose are parturient, average multiyear short-yearling mass is <175 kg, or >35% of annual browse biomass is removed by moose.