Phylogenetic implications of the morphology of the braincase of caecilian amphibians (Gymnophiona)

Caecilian morphology is strongly modified in association with their fossorial mode of life. Currently phylogenetic analyses of characters drawn from the morphology of caecilians lack resolution, as well as complementarity, with results of phylogenetic analyses that employ molecular data. Stemming from the hypothesis derived from the mammal literature that the braincase has the greatest potential (in comparison to other cranial units) to yield phylogenetic information, the braincase and intimately associated stapes of 27 species (23 genera) of extant caecilians were examined using images assembled via microcomputed tomography. Thirty‐four new morphological characters pertaining to the braincase and stapes were identified and tested for congruence with previously recognized morphological characters. The results reveal that when added to previous character matrices, characters of the braincase and stapes resolve generic‐level relationships in a way that is largely congruent with the results of molecular analyses. Analysis of a combined data set of molecular and morphological data provides a framework for conducting ancestral character state reconstructions, which resulted in the identification of 95 new synapomorphies for various clades and taxa, 27 of which appear to be unique for the taxa that possess them. Together these data demonstrate the utility of the application of characters of the braincase and stapes for resolving phylogenetic relationships for a group whose morphology is largely confounded by functional modifications. In addition this study provides evidence of the utility of the braincase in resolving problematic morphology‐based phylogeny outside of Amniota, in an amphibian group. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 160–201.     

News from the Biological Stain Commission No. 15

In the 15^th issue of News from the Biological Stain Commission (BSC), under the heading of Regulatory affairs, the Biological Stain Commission’s International Affairs Committee presents information from the plenary meetings of the International Standards Organization ISO/TC 212 Clinical laboratory testing and in vitro diagnostic test systems held on August 22–24, 2012 in Berlin, Germany. An additional discussion of the use of food dyes in India also is included.     

Accomplishments of the Trustees and laboratory staff of the Biological Stain Commission, 2002–2013

During the 12 years from 2002 to 2013, the Trustees and laboratory personnel of the Biological Stain Commission (BSC) can claim many accomplishments. These accomplishments are itemized under 11 categories: continuous publication of the official journal, Biotechnic & Histochemistry; production of four special issues of Biotechnic & Histochemistry devoted to specific dyes or stains; standardization of staining and dye purity; mechanisms of staining and prediction of dye behavior; publication of books or book chapters; effects of fixation and processing on staining; cancer research; immunohistochemistry; BSC Laboratory activities; miscellaneous publications; and administrative accomplishments.     

Begging call matching between a specialist brood parasite and its host: a comparative approach to detect coevolution

Studies of avian brood parasite systems have typically investigated the mimicry of host eggs by specialist parasites. Yet, several examples of similarity between host and parasite chick appearance or begging calls suggest that the escalation of host–parasite arms races may also lead to visual or vocal mimicry at the nestling stage. Despite this, there have been no large-scale comparative studies of begging calls to test whether the similarity of host and parasite is greater than predicted by chance or phylogenetic distance within a geographically distinct species assemblage. Using a survey of the begging calls of all native forest passerines in New Zealand, we show that the begging call of the host-specialist shining cuckoo ( Chrysococcyx lucidus ) is most similar to that of its grey warbler ( Gerygone igata ) host compared to any of the other species, and that this is unlikely to have occurred by chance. Randomization tests revealed that the incorporation of the shining cuckoo's begging calls into our species-set consistently reduced the phylogenetic signal within cluster trees based on begging call similarity. By contrast, the removal of the grey warbler calls did not reduce the phylogenetic signal in the begging call similarity trees. These two results support a scenario in which coevolution of begging calls has not taken place: the begging call of the host retains its phylogenetic signal, whereas that of the parasite has changed to match that of its host.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 208–216.     

Development and evaluation of a diatom-conductivity model from lakes in West Greenland

1. The area around Kangerlussuaq (Søndre Strømfjord; West Greenland, 67°N 51°W) contains thousands of lakes ranging from coastal, dilute (conductivity < 30 μS cm^–1) oligotrophic systems to subsaline (～4000 μS cm^–1), closed basin lakes close to the ice sheet margin. In closed basins, salinity (or conductivity) is often a proxy for effective moisture, and thus palaeorecords of lake conductivity can provide valuable palaeoclimatic data. Little or nothing is known about the recent history of these lakes and hence it is difficult to evaluate how they will respond to effects of future changes. 2. Over 100 lakes have been sampled (1996–2000) between the ice sheet and the outer coast for a variety of water chemical and limnological variables. Surface sediments were taken from a subset of 40 lakes and analysed for diatoms. Diatom responses to 28 environmental variables were analysed by multivariate ordination techniques and indicate that the main gradient is highly correlated to conductivity (explaining ～12% of species variance). Despite the relatively short gradient (24–4072 μS cm^–1), diatom assemblages exhibit a clear response to conductivity. The most saline lakes do not contain a true saline flora. 3. We developed a range of weighted averaging (WA) and weighted‐averaging partial least squares (WA‐PLS) models from this training data set and found two component WA‐PLS models performed best. The effects of data transformation and omission of dissolution susceptible species (Diatoma spp.) on model performance were also examined. The error statistics for the preferred WA‐PLS (2) model (r²_jack=0.88, root mean square error of prediction (RMSEP)=0.217 log μS cm^–1) compare well with other published models. 4. A ²¹⁰Pb‐dated short core from a meromictic, subsaline lake (Braya Sø; location 67°N, 51°W, max. depth 23 m; conductivity 2600 μS cm^–1) was analysed for diatoms. Diatom preservation is poor and some taxa (e.g. Diatoma spp.) are badly corroded. Lake water conductivity was reconstructed using WA‐PLS models. Diatom‐inferred conductivity ranges from 1800 to 4400 μS cm^–1 over the last 600 years (extrapolated ²¹⁰Pb chronology). 5. The Kangerlussuaq area of West Greenland is an important area for palaeoclimatic research, located as it is between the Greenland ice sheet (ice core records) and the Davis Straits to the west. The development of a statistically robust transfer function for diatoms and conductivity will enable the reconstruction of conductivity from the many subsaline lakes around the head of the fjord and, hence, regional estimates of changing palaeoprecipitation.     

Holocene carbon burial by lakes in SW Greenland

The role of the Arctic in future global change processes is predicted to be important because of the large carbon (C) stocks contained in frozen soils and peatlands. Lakes are an important component of arctic landscapes although their role in storing C is not well prescribed. The area around Kangerlussuaq, SW Greenland (66–68°N, 49–54°W) has extremely high lake density, with ∼20 000 lakes that cover about 14% of the land area. C accumulation rates and standing stock (kg C m⁻²), representing late- to mid-Holocene C burial, were calculated from AMS ¹⁴C-dated sediment cores from 11 lakes. Lake ages range from ∼10 000 cal yr  bp to ∼5400 cal yr  bp , and reflect the withdrawal of the ice sheet from west to east. Total standing stock of C accumulated in the studied lakes for the last ∼8000 years ranged from 28 to 71 kg C m⁻², (mean: ∼42 kg C m⁻²). These standing stock determinations yield organic C accumulation rates of 3.5–11.5 g C m⁻² yr⁻¹ (mean: ∼6 g C m⁻² yr⁻¹) for the last 4500 years. Mean C accumulation rates are not different for the periods 8–4.5 and 4.5–0 ka, despite cooling trends associated with the neoglacial period after 4.5 ka. We used the mean C standing stock to estimate the total C pool in small lakes (<100 ha) of the Kangerlussuaq region to be ∼4.9 × 10¹³ g C. This C stock is about half of that estimated for the soil pool in this region (but in 5% of the land area) and indicates the importance of incorporating lakes into models of regional C balance at high latitudes.     

转Bt基因棉挥发性气味的化学成分及其对棉铃虫的电生理活性

报道了对转Bt基因棉“GK-12”及其常规棉亲本“泗棉3号”挥发性化学物质的分析结果,以及棉铃虫对Bt棉挥发性化学物质的电生理反应,以期为抗虫棉的生态学和安全性评价提供化学生态学的证据。结果表明,在7～8个真叶期,转Bt基因棉的α-蒎烯和β-蒎烯的相对含量比常规棉高许多,倍半萜烯C和一个含量很低的化合物（该化合物对棉铃虫有电生理活性）是常规棉所没有的。转基因Bt棉的挥发性物质中有9个化合物可引起棉铃虫的触角电位反应。