Historical Archaeology

Historical Archaeology . Martin Hall and Stephen W. Silliman, eds. Malden, MA: Blackwell, 2006. 341 pp.     

Isolation and Hybridization Kinetics of Messenger RNA from <Emphasis Type="Italic">Dictyostelium discoideum</Emphasis>

Messenger RNA from the cellular slime mould Dictyostelium discoideum contains a sequence of poly A residues and more than 95% hybridizes to the non-reiterated DNA.     

Testing hypotheses of speciation in the Plethodon jordani species complex with allozymes and mitochondrial DNA sequences

Salamander populations of the Plethodon jordani species complex form a challenging system for applying the general lineage concept of species to diagnose population-level lineages. The present study reports and analyses mitochondrial-DNA haplotypes (∼1200 nucleotide bases from the genes encoding ND2, tRNA^Trp, and tRNA^Ala from 438 salamanders) from 100 populations representing six species of the P. jordani complex ( Plethodon amplus , Plethodon cheoah , Plethodon jordani , Plethodon meridianus , Plethodon metcalfi , and Plethodon montanus ) with comparative analyses of previously published allozymic data to reconstruct the evolutionary history of this group and to diagnose species lineages. Analyses of mitochondrial haplotypic data include nested-cladistic analysis of phylogeography, analysis of molecular variance, hierarchical analysis of nucleotide-diversity measures, and likelihood-based estimates of recent temporal changes in population size. New analyses of allozymic data include multidimensional scaling and principal component analyses, and both data sets are analysed and compared for congruent genetic structure using Mantel correlation tests. These analyses in combination identify the six named species as distinct evolutionary lineages despite sporadic genetic exchanges among them and some discordance between mitochondrial DNA and allozymic markers. Sexual isolation is not complete for any pair of these six species, but they replace each other geographically and appear to block the geographical spreading of their neighbours. The P. jordani complex is a strong study system for investigating the genetic and ecological processes responsible for vicariant speciation.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 89 , 25–51.     

Survival in the Rockies of an endangered hybrid swarm from diverged caribou (Rangifer tarandus) lineages

In North America, caribou ( Rangifer tarandus ) experienced diversification in separate refugia before the last glacial maximum. Geographical isolation produced the barren-ground caribou ( Rangifer tarandus groenlandicus ) with its distinctive migratory habits, and the woodland caribou ( Rangifer tarandus caribou ), which has sedentary behaviour and is now in danger of extinction. Herein we report on the phylogenetics, population structure, and migratory habits of caribou in the Canadian Rockies, utilizing molecular and spatial data for 223 individuals. Mitochondrial DNA analyses show the occurrence of two highly diverged lineages; the Beringian–Eurasian and North American lineages, while microsatellite data reveal that present-day Rockies' caribou populations have resulted from interbreeding between these diverged lineages. An ice-free corridor at the end of the last glaciation likely allowed, for the first time, for barren-ground caribou to migrate from the North and overlap with woodland caribou expanding from the South. The lack of correlation between nuclear and mitochondrial data may indicate that different environmental forces, which might also include human-caused habitat loss and fragmentation, are currently reshaping the population structure of this postglacial hybrid swarm. Furthermore, spatial ecological data show evidence of pronounced migratory behaviour within the study area, and suggest that the probability of being migratory may be higher in individual caribou carrying a Beringian–Eurasian haplotype which is mainly associated with the barren-ground subspecies. Overall, our analyses reveal an intriguing example of postglacial mixing of diverged lineages. In a landscape that is changing due to climatic and human-mediated factors, an understanding of these dynamics, both past and present, is essential for management and conservation of these populations.     

Historical ozone concentrations and flavonoid levels in herbarium specimens of the Antarctic moss Bryum argenteum

Depletion of stratospheric ozone since the mid 1970s has led to significant increases in ultraviolet B (UVB) irradiation over Antarctica. The detrimental effects of UVB on plants are many, but plants produce photoprotective flavonoids that reduce cellular damage. We used herbarium samples of the moss Bryum argenteum collected in Antarctica to compare the levels of flavone aglycones in plants collected before and after the formation of the ozone hole. The interpretation of historical data is difficult, because environmental conditions immediately before sample collection are unknown. Factors such as cloud cover can have a significant influence on UVB dose at ground level, modifying the flavonoid content of the specimen and adding considerable variability to the results. Nevertheless, our results revealed significant relationships between total flavone concentration and pooled year classes ( P = 0.001). Furthermore, regression analysis showed a significant negative relationship of total flavone concentration and the level of ozone immediately before the time of collection ( P = 0.016). In addition, the ratio of luteolin (an ortho -dihydroxylated flavone) to apigenin (a monohydroxylated flavone) increased significantly with several environmental parameters. These included (a) increasing modelled midday UVB radiation ( P = 0.002), (b) increasing modelled midday UVB/PAR ratio ( P < 0.001), and (c) decreasing ozone concentration ( P < 0.001). We emphasise the utility of this ratio in interpreting the historical ozone trends rather than relying on changes in total flavone concentrations alone. These results illustrate that herbarium specimens may reveal historical levels of UVB radiation.     

Conservation insights from changing associations between habitat,territory distribution and mating system of Corn Buntings Emberiza calandra over a 20‐year population decline

Associations between habitat and animal distributions are widely used to make conservation recommendations. However, short‐term studies do not allow investigation of temporal variation in associations as habitats change or populations decline. Here we quantify changes in the habitat attributes and distribution of breeding territories in a multiple‐brooded, crop‐nesting farmland bird, the Corn Bunting Emberiza calandra, over a 20‐year period during which the study population declined by 91%. Corn Buntings were positively associated with weedy fields, overhead wires, spring cereals and, in early summer, with winter barley and forage grass. Territory associations with wires (positive) and fallow (positive in early summer, negative in late summer) were stronger in later years when the population was smaller. Trends in the proportions of males holding territories into late summer (decline), and mated polygynously or not at all (increases), suggested that habitat quality declined and became more spatially variable in later years. Field size increased and weed abundance within fields declined, reducing the availability of field‐boundary song‐posts, invertebrate‐rich foraging habitats and physical cover for nests within crops. Conservation recommendations are for weed‐rich or under‐sown spring cereals and winter barley combined with late‐cut hay and fallow, especially when offered close to song‐posts such as overhead wires. We also demonstrate the value of long‐term studies by comparing our 20‐year analysis with 3‐year periods at the start, middle and end of this period, and expose some risks of conservation recommendations derived from short studies.     

Defoliation alters the relative contributions of recent and non-recent assimilate to root exudation from Festuca rubra

The deposition of organic compounds from plant roots is a key determinant of rhizosphere microbial activity and community structure. Consequently, C-flow from roots to soil is an important process in coupling plant and microbial productivity, via impacts on microbial nutrient cycling in soil. Experimentally, isotopic tracers (¹³C or ¹⁴C) are used to track C inputs to soil and microbial communities. However, in many such studies the relationship between labelled C-flows and total C-flows are not established, limiting the interpretative value of the results. In this study, we applied steady-state near natural abundance ¹³CO₂ labelling to determine the impact of partial defoliation of Festuca rubra on root exudation. This approach in axenic culture facilitated determination of the contribution of pre- and post-defoliation assimilates both to root C-flow and plant tissues. The results demonstrated that total root exudation was increased in the two days following defoliation. This was concurrent with reduced net CO₂ assimilation and reduced allocation of post-defoliation assimilates below-ground and to active root meristems. Through determination of the δ¹³C of root exudates, it was established that the source of the increased root exudation was pre-defoliation assimilate. However, this response was transient, with reduced deposition of pre- and post-defoliation assimilates from roots during the period 2–4 d following defoliation. The results highlight the limitations of pulse-labelling approaches as a means of quantifying impacts of treatments on root exudation, particularly where the treatment is likely to affect plant C-partitioning or the balance between deposition to, and re-mobilization from, C-storage pools.     

Trophic level modulates carabid beetle responses to habitat and landscape structure: a pan‐European study

1. Anthropogenic pressures have produced heterogeneous landscapes expected to influence diversity differently across trophic levels and spatial scales. 2. We tested how activity density and species richness of carabid trophic groups responded to local habitat and landscape structure (forest percentage cover and habitat richness) in 48 landscape parcels (1 km²) across eight European countries. 3. Local habitat affected activity density, but not species richness, of both trophic groups. Activity densities were greater in rotational cropping compared with other habitats; phytophage densities were also greater in grassland than forest habitats. 4. Controlling for country and habitat effects, we found general trophic group responses to landscape structure. Activity densities of phytophages were positively correlated, and zoophages uncorrelated, with increasing habitat richness. This differential functional group response to landscape structure was consistent across Europe, indicated by a lack of a country × habitat richness interaction. Species richness was unaffected by landscape structure. 5. Phytophage sensitivity to landscape structure may arise from relative dependency on seed from ruderal plants. This trophic adaptation, rare in Carabidae, leads to lower phytophage numbers, increasing vulnerability to demographic and stochastic processes that the greater abundance, species richness, and broader diet of the zoophage group may insure against.