Reproductive processes in sponges: a critical evaluation of current data and views

The nature of a number of fundamental processes occurring during reproduction in sponges still remains in doubt. Among the more significant of these are: the true status of sponges described as dioecious, namely whether some are actually successive hermaphrodites; the origin of oogonia, which have recently been claimed to be derived from choanocytes; the origin and mechanism of formation of large spermatogenic masses; the specific pathway leading to fertilization taken by sperm cells within the sponge tissue of viviparous species; the role played during larval metamorphosis by somatic cells which are incorporated into embryos; the cell lineage of choanocytes which form flagellated chambers during larval metamorphosis; the specific relationship of somatic growth and dormancy to gametogenesis; the role of budding and fragmentation in population maintenance; the role, if any, of gemmules in dispersion. It is considered mandatory that new techniques be developed in order to further elucidate these and other reproductive processes and to gather definitive data concerning them. The employment of only microscopic techniques is ultimately insufficient for investigating the dynamic relationships of reproductive processes.     

Molecular phylogenetics of Linaceae with complete generic sampling and data from two plastid genes

The phylogeny of Linaceae is examined, with sampling from the 13 commonly recognized genera of the family and sequence data from the plastid genes matK and rbcL. Representatives of 24 additional families of the order Malpighiales are included in the analyses, with members of Celastrales, Fabales, Fagales, Oxalidales and Rosales used as outgroups. Linaceae and both subfamilies, the temperate Linoideae and the tropical Hugonioideae, are found to be monophyletic in likelihood‐ and parsimony‐based analyses, although the monophyly of Hugonioideae is not well supported. Average divergence time estimates using rbcL indicate that the subfamilies diverged from each other during the Palaeocene, approximately 60 million years ago. No sister group to Linaceae is consistently identified in these analyses, and relationships among families of Malpighiales are not well resolved. In accord with previous estimates of Linoideae phylogeny, Linum is shown to be nonmonophyletic, with several segregate genera nested within it, but the relationships of the south‐east Asian genera, Anisadenia, Reinwardtia and Tirpitzia, remain uncertain. In Hugonioideae, Indorouchera and Philbornea are found to be closely related to members of Hugonia section Durandea. Relationships of the neotropical genera Hebepetalum and Roucheria to the palaeotropical hugonioids are not consistently resolved. © 2010 The Linnean Society of London, Botanical Journal of the Linnean Society, 2011, 165 , 64–83.     

Nomenclature in the dock. Overclassification leads to instability: a case study in the horticulturally important genus Cyclamen (Myrsinaceae)

Nine different classifications have been produced in the last 70 years for the horticulturally valuable genus Cyclamen , a small genus with fewer than 30 species. These classifications, generated by intuitive methods and cladistic analyses, incorporated a total of four infrageneric ranks above that of species and were based on data from morphology, cytology and DNA sequencing. Our results, based on cladistic analyses of three independent data sources − nrDNA ITS, cpDNA trn L intron and morphological data − reveal good resolution only in nrDNA sequence data. However, when these three data sources are combined they provide stronger resolution and support for three major clades, only one of which, subgenus Psilanthum , has been consistently supported in previous classifications. The differing infrageneric classifications produced in Cyclamen result from varying taxon sampling, differing interpretation of morphological data, changes in the sources and analysis of data, and inconsistent application of names. Extensive subdivision of small genera in the absence of adequate data that could provide evidence for consistent patterns of relationship is premature and leads to a proliferation of names.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 146 , 339–349.     

Nutrients exert a stronger control than climate on recent diatom communities in Esthwaite Water: evidence from monitoring and palaeolimnological records

1. A long‐term monitoring programme on phytoplankton and physicochemical characteristics of Esthwaite Water (England) that started in 1945 provides a rare opportunity to understand the effects of climate and nutrients on a lake ecosystem. 2. Monitoring records show that the lake experienced nutrient enrichment from the early 1970s, particularly after 1975, associated with inputs from a local sewage treatment plant, resulting in marked increases in concentration of soluble reactive phosphorus (SRP). Climatic variables, such as air temperature (AirT) and rainfall, exhibit high variability with increasing trends after 1975. 3. Diatom analyses of an integrated ²¹⁰Pb‐dated lake sediment core from Esthwaite Water, covering the period from 1945 to 2004, showed that fossil diatoms exhibited distinct compositional change in response to nutrient enrichment. 4. Redundancy analysis (RDA) based on diatom and environmental data sets over the past 60 years showed that the most important variables explaining diatom species composition were winter concentrations of SRP, followed by AirT, independently explaining 22% and 8% of the diatom variance, respectively. 5. Additive models showed that winter SRP was the most important factor controlling the diatom assemblages for the whole monitoring period. AirT had little effect on the diatom assemblages when nutrient levels were low prior to 1975. With the increase in nutrient availability during the eutrophication phase after 1975, climate became more important in regulating the diatom community, although SRP was still the major controlling factor. 6. The relative effects of climate and nutrients on diatom communities vary depending on the timescale. RDA and additive model revealed that climate contributed little to diatom dynamics at an annual or decadal scale. 7. The combination of monitoring and palaeolimnological records employed here offers the opportunity to explore how nutrients and climate have affected a lake ecosystem over a range of timescales. This dual approach can potentially be extended to much longer timescales (e.g. centuries), where long‐term, reliable observational records exist.     

Combining limnological and palaeolimnological data to disentangle the effects of nutrient pollution and climate change on lake ecosystems: problems and potential

1. As long‐term observational lake records continue to lengthen, the historical overlap with lake sediment records grows, providing increasing opportunities for placing the contemporary ecological status of lakes in a temporal perspective. 2. Comparisons between long‐term data sets and sediment records, however, require lake sediments to be accurately dated and for sediment accumulation rates to be sufficiently rapid to allow precise matching with observational data. 3. The critical role of the sediment record in this context is its value in tracking the changing impact of human activity on a lake from a pre‐disturbance reference through to the present day. 4. Here, we use data from a range of lakes across Europe presented as case studies in this Special Section. The seven sites considered all possess both long‐term observational records and high‐quality sediment records. Our objective is to assess whether recent climate change is having an impact on their trophic status and in particular whether that impact can be disentangled from the changes associated with nutrient pollution. 5. The palaeo‐data show clear evidence for the beginning of nutrient pollution varying from the mid‐nineteenth century at Loch Leven to the early and middle twentieth century at other sites. The monitoring data show different degrees of recovery when judged against the palaeo‐reference. 6. The reason for limited recovery is attributed to continuing high nutrient concentrations related to an increase in diffuse nutrient loading or to internal P recycling, but there is some evidence that climate change may be playing a role in offsetting recovery at some sites. If this is the case, then lake ecosystems suffering from eutrophication may not necessarily return to their pre‐eutrophication reference status despite the measures that have been taken to reduce external nutrient loading. 7. The extent to which future warming might further limit such recovery can be evaluated only by continued monitoring combined with the use of palaeo‐records that set the pre‐eutrophication reference.     

Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA,alpha-tubulin and HSP90 genes: Implications for the evolutionary history of the double karyomastigont of diplomonads

Background  

Fornicata is a relatively recently established group of protists that includes the diplokaryotic diplomonads (which have two similar nuclei per cell), and the monokaryotic enteromonads, retortamonads and Carpediemonas, with the more typical one nucleus per cell. The monophyly of the group was confirmed by molecular phylogenetic studies, but neither the internal phylogeny nor its position on the eukaryotic tree has been clearly resolved.     

Statins but not fibrates improve the atherogenic to anti-atherogenic lipoprotein particle ratio: a randomized crossover study

Background  

Prior studies suggested low density lipoprotein particle (LDLP) size is a predictor of atherosclerosis. Knowledge of effects of lipid lowering drugs on lipoprotein subclasses is useful. We treated subjects with hyperlipidemia sequentially with statins and fibrates, the 2 main classes of lipid lowering therapy and studied changes in NMR lipoprotein subclasses.     

Variation in wetland invertebrate communities in lowland acidic fens and swamps

1. Invertebrates were collected semi‐quantitatively from four relatively undisturbed wetlands in the west coast of New Zealand’s South Island: two acidic fens and two swamps. Samples were collected from up to four discrete habitats within each wetland: large open‐water channels, small leads (small, ill‐defined channels with emergent vegetation in them) and large (>10 m diameter) or small (<10 m diameter) ponds. Samples were also collected from different plant species within each wetland, each with different morphology, and from areas without vegetation. This was done to determine whether invertebrate communities varied more between‐wetlands than within‐wetlands, as the results had implications for future wetland monitoring programmes. 2. Principal components analysis of water chemistry data revealed striking differences in pH, conductivity and nutrients between the four wetlands. Not surprisingly, pH was lowest in one of the acidic fens, and highest in one of the swamps, where conductivity was also high. Midges (Tanytarsus, Tanypodinae, Orthocladiinae and Ceratopogonidae), nematodes, harpactacoid copepods and the damselfly Xanthocnemis dominated the invertebrate fauna. Orthoclad midges and mites were the most widespread taxa, found in 91 of 94 samples. Diptera were the most diverse invertebrate group, followed by Trichoptera and Crustacea. 3. Ordination analysis of the invertebrate data showed that the four wetlands supported different invertebrate communities. However, species composition did not change completely along the ordination axes, suggesting that a relatively species‐poor invertebrate fauna was found in the wetlands. Taxa such as molluscs were restricted to wetlands with high pH. Multi‐response permutation procedures (MRPP) was used to analyse resultant ordination scores to see how they differed according to five terms: ‘Wetland’, ‘Habitat’, ‘Growth Form’, ‘Morphology’ and ‘Plant’. Most of the sample separation along ordination axes reflected differences between wetland, although the ‘Habitat’ and ‘Plant’ terms also explained some of the variation. The ‘Growth Form’ and ‘Morphology’ terms had only minor effects on community composition. 4. A multivariate regression tree modelled invertebrate assemblages according to the five predictor terms. The resultant model explained 54.8% of the species variance. The ‘Wetland’ term contributed most to the explanatory power, followed by ‘Habitat’. ‘Growth type’ and ‘Morphology’ explained only a small amount of variance to the regression tree, while the different plant species explained none of the variation. 5. Variation in these New Zealand wetland invertebrate communities appears to be controlled most by large‐scale factors operating at the level of individual wetlands, although different habitats within individual wetlands contributed slightly to this variation. Based on these results, sampling programmes to describe wetland invertebrate communities do not need to sample specific habitats or plant types within a wetland. Instead, samples can be collected from a wide range of habitats within individual wetlands, and pooled. Within each habitat, it is unnecessary to collect individual samples from different macrophytes or un‐vegetated areas. Our results suggest that collecting replicate pooled samples from different habitats within each wetland will be sufficient to characterize the invertebrate assemblage of each wetland.     

New insights in Salicornia L. and allied genera (Chenopodiaceae) inferred from nrDNA sequence data

A phylogenetic analysis was performed based on ITS DNA sequences of fourteen samples from different sources of six species of Salicornia, the three allied genera Arthrocnemum, Sarcocornia and Halocnemum of the same tribe Salicornieae, and other genera of the subfamily Salicornioideae used in previous studies. Bassia hirsuta, Camphorosma monspeliaca (subfamily Chenopodioideae) and four species of Suaeda (subf. Suaedoideae) were chosen as outgroups. Results show that the annual genus Salicornia is a sister group to the perennial genera Sarcocornia, Arthrocnemum and Halocnemum. Moreover, the phylogenetic analysis based on ITS results distinguished two groups of Salicornia species which fitted with ploidy level: one group consisted of diploid species, and the second of tetraploid ones. Sarcocornia and Arthrocnemum are shown to be closely related, even though the species investigated here exhibited an evident distance between their ITS sequences. On the basis of our results, these two genera should be united. Bienertia (already separated as Bienertieae) was confirmed as probable outgroup to the subf. Salicornioideae, while Kalidium (subf. Salicornioideae, tribe Halopeplideae) was an outgroup to the rest of the Salicornioideae (tribe Salicornieae). The group Allenrolfea plus Halocnemum was the most basal of the tribe Salicornieae amongst those investigated in this study. The two samples of Halocnemum strobilaceum used in this work displayed numerous changes (transitions and transversions) in their respective sequences, probably related to their morphological and chorological differentiation. On the basis of our analysis, the most probable basal chromosome number for Salicornieae appears to be 2n = 18. The same number would also be the base number for the annual genus Salicornia and the perennial Arthrocnemum ( + Sarcocornia), with polyploidy arising independently in the two groups.