Structured models of metapopulation dynamics

I develop models of metapopulation dynamics that describe changes in the numbers of individuals within patches. These models are analogous to structured population models, with patches playing the role of individuals. Single species models which do not include the effect of immigration on local population dynamics of occupied patches typically lead to a unique equilibrium. The models can be used to study the distributions of numbers of individuals among patches, showing that both metapopulations with local outbreaks and metapopulations without outbreaks can occur in systems with no underlying environmental variability. Distributions of local population sizes (in occupied patches) can vary independently of the total population size, so both patterns of distributions of local population sizes are compatible with either rare or common species. Models which include the effect of immigration on local population dynamics can lead to two positive equilibria, one stable and one unstable, the latter representing a threshold between regional extinction and persistence.     

Influence of food quality on growth and reproduction in Daphnia

SUMMARY. 1. Growth and reproduction were measured for Daphnia pulex (Leydig) fed Scenedesmus obliquus (Turp.) Kutz. grown with nitrogen-sufficient and nitrogen-deficient media. The incorporation of carbon into the body of D. pulex was traced using ¹⁴C-labelled algae and biochemical fractionation.
2. Scenedesmus cultured on N-defkient media allocated more carbon to lipid and less to protein than when cultured on N-sufficient media.
3. In a short-term feeding experiment, Daphnia accumulated more lipid when fed N-deficient algal cells high in lipid content than when fed algae grown on N-sufficient media that were lower in lipid.
4. Animals grew faster and produced larger broods when fed algae grown on an N-sufficient medium over an 8-day period. Daphnids fed N-deficient algae had higher quantities of body lipid, suggesting it was not a lack of energy which limited their growth and reproduction.
5. Daphnia fed algae grown on N-deficient media allocated more lipid to eggs, and their offspring lived longer under starvation conditions.     

Chemical evidence from the flavonoids relevant to the classification of Mains species

The phenolic compounds of the leaf and bark of Malus species have been examined. The dihydrochalcone phloridzin and a range of flavonoids occur in all barks, but eight compounds were found in only a limited number of species and their distribution shows a relationship with the taxonomy of Malus , providing useful additional characters. The various proposed classifications of Malus species are discussed in the light of this evidence and that of Rehder is found to be in best agreement except for his placing of M'. florentina which, by its chemistry, is clearly related to the section Docyniopsis. The geographical distribution of the distinctive phenolics suggests a wide spreading of early Malus probably from south-east Asia as far as North America and a later diversification confined almost entirely to Eurasia. The different phenolic patterns are discussed and related to proposed phytogenies of Malus.     

Community structure in some southern English streams: the influence of physicochemical factors

SUMMARY. 1. Invertebrates and fish were surveyed during October 1976 in thirty-four stony riffle stream sites in Ashdown Forest, Sussex.
2. A variety of physicochemical factors were also measured in an attempt to assess the importance of each in determining the distribution of species and the structure of communities.
3. Three analytical techniques—stepwise multiple regression analysis, ordination and community classification—revealed that the structure of these communities was strongly related to variation in stream pH. Acid sites had low numbers of individuals, low species richness and low equitabilities. Summer temperature and stream discharge also appeared to play significant roles. The pattern of catchment land use was shown to have an important bearing on stream pH.
4. In the most acid sites only collectors, shredders and predators occurred. In more basic sites the number of species in collector and predator categories increased and these were joined by grazer/scrapers and filter feeders.
5. A theoretical basis for explaining stream community structure is discussed.     

Habitat segregation and interactive effects of multiple predators on a prey assemblage

1. In a field experiment we examined the interactive effects of two common predators of zooplankton, bluegill sunfish (Lepomis macrochirus) and Chaoborus spp. on the growth rate and habitat use of three congeneric prey species (Daphnia). Bluegill and Chaoborus both consume Daphnia, but bluegill also prey on Chaoborus. The prey species, Daphnia pulicaria, D. rosea and D. retrocurva, differed in body size and vertical distribution. We expected the largest species, D. pulicaria, to be most vulnerable to fish predation and the smallest species, D. retrocurva, to be most vulnerable to Chaoborus predation. 2. As we expected, the population growth rate of D. pulicaria was significantly reduced by fish. However, Chaoborus also significantly reduced the growth rate of this species. No significant interaction effect was detected, indicating that the effect of these predators was additive. The growth rates of D. rosea and D. retrocurva were significantly reduced by Chaoborus, but a significant interaction effect indicated that the effect of Chaoborus was stronger in the absence of fish than when fish were present. Therefore the impact of Chaoborus and fish on D. rosea and D. retrocurva was non-additive. The interactive effect of the two predators on D. retrocurva was greater in magnitude than on D. rosea. 3. In the absence of predators, the three Daphnia species showed no differences in mean habitat depth between day and night. Both predators significantly affected diel habitat use of D. pulicaria and D. rosea. Fish caused both of these Daphnia species to move deeper during the day, whereas Chaoborus caused Daphnia to move into shallower water at night. Daphnia retrocurva tended to migrate upwards at night in all predator treatments, but no significant differences in migration were observed among the predator treatments. The effects of predators on habitat use were not interactive for any prey species. 4. Our results suggest that body size, habitat use and the diel migratory response to predators are important factors mediating the interactive effects of multiple predator types on zooplankton.     

Navigating the mtDNA road map out of the morphological maze: interpreting morphological variation in the diverse Monomorium rothsteini (Forel) complex (Hymenoptera: Formicidae)

Monomorium is a large and diverse ant genus with speciose radiations in both the Afrotropical and Australian regions. According to the most recent taxonomic revision, many Australian species are characterised by very broad distributions and variable morphology, which suggests that some species may be unrecognised species complexes. With a continent‐wide distribution and diverse yet overlapping morphology, M. rothsteini (Forel) is representative of the greater challenge that exists in Australian Monomorium systematics. Here we investigate species boundaries in M. rothsteini using a molecular phylogenetic framework to interpret the complex overlap of nine morphological characters (with 31 states) and examine biogeographic relationships among the lineages. Bayesian inference resolved 38 mtDNA lineages that were morphologically separable, at least from their sister lineage. Although the morphological characters were intermixed across the phylogeny, instances of inseparable morphology among sister clades was rare. Seventeen lineages exhibited complete morphological overlap with one or more other lineages and could not be separated by Principal Component Analysis based on 12 morphometric variables. Two‐thirds of all lineages occurred sympatrically with one or more both genetically and morphologically divergent lineages. The two nuclear markers EF1αF2 and wingless were used to generate haplotype networks which were characterised by a star‐like pattern indicative of a rapid and recent radiation. Several haplotypes for both nuclear gene regions were shared among individuals occurring in separate mtDNA clades which we were also unable to distinguish morphologically or that were occurring in sympatry, indicating possible introgression in both the mtDNA and nuclear genomes. Clear biogeographic affinities among samples within a lineage were detected but there was no overall pattern in the biogeographic relationships among the lineages. We conclude that M. rothsteini is a large species complex that has undergone a complex evolutionary history following aridification of the Australian continent, and discuss the implications of this conclusion for the systematics of Australian Monomorium more generally.     

Reconsideration of Phylogenetic Relationships of the Subclass Peritrichia (Ciliophora, Oligohymenophorea) Based on Small Subunit Ribosomal RNA Gene Sequences, with the Establishment of a New Subclass Mobilia Kahl, 1933

ABSTRACT. Based on its characteristic oral apparatus, the ciliate subclass Peritrichia has long been recognized as a monophyletic assemblage composed of the orders Mobilida and Sessilida. Following the application of molecular methods, the monophyly of Peritrichia has recently been questioned. We investigated the phylogenetic relationships of the peritrichous ciliates based on four further complete small subunit ribosomal RNA sequences of mobilids, namely Urceolaria urechi, Trichodina meretricis, Trichodina sinonovaculae , and Trichodina ruditapicis . In all phylogenetic trees, the mobilids never clustered with the sessilids, but instead formed a monophyletic assemblage related to the peniculines. By contrast, the sessilids formed a sister clade with the hymenostomes at a terminal position within the Oligohymenophorea. We therefore formally separate the mobilids from the sessilids (Peritrichia sensu stricto) and establish a new subclass, Mobilia Kahl, 1933 , which contains the order Mobilida Kahl, 1933 . We argue that the oral apparatus in the mobilians and sessilid peritrichs is a homoplasy, probably due to convergent evolution driven by their similar life-styles and feeding strategies. Morphologically, the mobilians are distinguished from all other oligohymenophoreans by the presence of the adhesive disc, this character being a synapomorphy for the Mobilia.     

Phylogenetic Separation in Limb Use in Captive Gibbons (Hylobatidae): A Comparison Across the Primate Order

Although there have been few studies of self‐scratching in primates, some have reported distinct differences in whether hands or feet are used, and these variations seem to reflect the evolutionary history of the Order. Monkeys and prosimians use both hands and feet to self‐scratch while African great apes use hands almost exclusively. Gibbons represent an evolutionary divergence between monkeys and great apes and incidental observations at the Gibbon Conservation Center pointed to a difference in self‐scratching among the four extant gibbon genera (Hoolock, Nomascus, Symphalangus, and Hylobates). To validate and further explore these preliminary observations, we collected systematic data on self‐scratching from 32 gibbons, including nine species and all four genera. To supplement gibbon data, we also collected self‐scratching information from 18 great apes (four species), five prosimians (two species), 26 New World Monkeys (nine species) and 20 Old World Monkeys (seven species). All monkeys and some prosimians used both hands and feet to self‐scratch, whereas one prosimian species used only feet. All African great apes used hands exclusively (orangutans were an exception displaying occasional foot‐use). This appears to represent a fundamental difference between monkeys and great apes in limb use. Interestingly, there was a clear difference in self‐scratching between the four gibbon genera. Hylobates and Symphalangus self‐scratched only with hands (like all African great apes), while Hoolock and Nomascus self‐scratched with both hands and feet (like monkeys and prosimians). This difference in gibbon behavior may reflect the evolutionary history of gibbons as Hoolock and Nomascus are thought to have evolved before both Hylobates and Symphalangus. What evolutionary pressures led to this divergent pattern is currently opaque; however, this shift in limb preference may result from niche separation across the order facilitating differences in the behavioral repertoire associated with hind and forelimbs. Am. J. Primatol. 74:1035‐1043, 2012. © 2012 Wiley Periodicals, Inc.