Antimicrobial activity of <Emphasis Type="Italic">Alcaligenes sp</Emphasis>. HPC 1271 against multidrug resistant bacteria

Alcaligenes sp. HPC 1271 demonstrated antibacterial activity against multidrug resistant bacteria, Enterobacter sp., resistant to sulfamethoxazole, ampicillin, azithromycin, and tetracycline, as well as against Serratia sp. GMX1, resistant to the same antibiotics with the addition of netilmicin. The cell-free culture supernatant was analyzed for possible antibacterials by HPLC, and the active fraction was further identified by LC-MS. Results suggest the production of tunicamycin, a nucleoside antibiotic. The draft genome of this bacterial isolate was analyzed, and the 4.2 Mb sequence data revealed six secondary metabolite-producing clusters, identified using antiSMASH platform as ectoine, butyrolactone, phosphonate, terpene, polyketides, and nonribosomal peptide synthase (NRPS). Additionally, the draft genome demonstrated homology to the tunicamycin-producing gene cluster and also defined 30 ORFs linked to protein secretion that could also play a role in the antibacterial activity observed. Gene expression analysis demonstrated that both NRPS and dTDP-glucose 4,6-dehydratase gene clusters are functional and could be involved in antibacterial biosynthesis.     

Nanoscale petrographic and geochemical insights on the origin of the Palaeoproterozoic stromatolitic phosphorites from Aravalli Supergroup,India

Stromatolites composed of apatite occur in post‐Lomagundi–Jatuli successions (late Palaeoproterozoic) and suggest the emergence of novel types of biomineralization at that time. The microscopic and nanoscopic petrology of organic matter in stromatolitic phosphorites might provide insights into the suite of diagenetic processes that formed these types of stromatolites. Correlated geochemical micro‐analyses of the organic matter could also yield molecular, elemental and isotopic compositions and thus insights into the role of specific micro‐organisms among these communities. Here, we report on the occurrence of nanoscopic disseminated organic matter in the Palaeoproterozoic stromatolitic phosphorite from the Aravalli Supergroup of north‐west India. Organic petrography by micro‐Raman and Transmission Electron Microscopy demonstrates syngeneity of the organic matter. Total organic carbon contents of these stromatolitic phosphorite columns are between 0.05 and 3.0 wt% and have a large range of δ¹³C_org values with an average of ?18.5‰ (1σ = 4.5‰). δ¹⁵N values of decarbonated rock powders are between ?1.2 and +2.7‰. These isotopic compositions point to the important role of biological N₂‐fixation and CO₂‐fixation by the pentose phosphate pathway consistent with a population of cyanobacteria. Microscopic spheroidal grains of apatite (MSGA) occur in association with calcite microspar in microbial mats from stromatolite columns and with chert in the core of diagenetic apatite rosettes. Organic matter extracted from the stromatolitic phosphorites contains a range of molecular functional group (e.g. carboxylic acid, alcohol, and aliphatic hydrocarbons) as well as nitrile and nitro groups as determined from C‐ and N‐XANES spectra. The presence of organic nitrogen was independently confirmed by a CN^? peak detected by ToF‐SIMS. Nanoscale petrography and geochemistry allow for a refinement of the formation model for the accretion and phototrophic growth of stromatolites. The original microbial biomass is inferred to have been dominated by cyanobacteria, which might be an important contributor of organic matter in shallow‐marine phosphorites.     

Effect of Auxins and Light on Rooting Stem Cuttings of Populus nigra Salix tetrasperma, Ipomea fistulosa and Hibiscus notodus in Relation to Polarity

The apical and basal ends of stem cuttings of Populus nigra, Salix tetrasperma, Ipomoea fistulosa and Hibiscus notodus were treated with 10 mg/l solutions of IAA and IBA for 24 hours and were planted either erect or inverted both in light and dark. Observations for the number of cuttings that rooted and the roots produced on them were recorded at weekly intervals. In Salix, Ipomoea and Hibiscus rooting was more on cuttings planted erect, while in populus it did not differ much with the manner of planting. The reduced rooting in inverted cuttings may be ascribed to the low level of endogenous auxin at the apex due to polar transport. An exogenous application of auxins enhanced rooting on inverted cuttings. In dark, roots on Populus and Salix cuttings were produced both above and within the rooting medium. The weak polarity of these two plants may be due to the potential root primordia reported in their stem. The formation of callus occurred on the top of Populus cuttings whether planted erect or inverted but it differentiated into branches on erect cuttings only. In those planted in an inverted position the callus failed to differentiate in spite of the application of kinetin, auxins, TIBA, coumarin and sucrose, and dried ultimately.     

CO2 exchange under varying light intensities in some under- and overtemperature subtropical tree species

CO₂ exchange, transpiration and stomatal conductance of 39 subtropical tree species were studied under five light intensities at around atmospheric air temperatures found in subtropics during the active growth period of these species. Photosynthesis rates under different light intensities were strongly dependent on leaf to air temperature differences (T). Based on T, 39 species fell in two distinct categories namely, undertemperature and overtemperature. Majority of the species in the former group were found to have relatively higher rate of photosynthesis, stomatal conductance, transpiration as well as water use efficiency. These species also showed higher light saturation for photosynthesis. The significance of the results is discussed in terms of adaptive potential in the two types of species.     

Development of laticifer cells in callus cultures of Calotropis procera (Ait.) R. Br.

Tissue cultures were established from stem explants of Calotropis procera, a hydrocarbon yielding desert shrub on Murashige and Skoog's medium supplemented with 1.5 mg. 1^–01 2,4-D + 0.5 mg.1^–1 kinetin and polyvinylpyrrolidone. Laticifer cells were not present in young callus but were observed after 4 weeks of callus growth when examined histochemically. These young laticifers were detected in the 5th week of culture and were distinguished from surrounding cells by the presence of characteristic cytoplasm and thin walls. A group of cells with extensive branching was developed after 8 weeks of growth of the callus cultures. These cells were thick walled and contained latex particles in coagulated masses. Positive Liebermann-Burchard test proved the presence of terpenoids in these laticifers.Abbreviations 2,4-D 2,4-dichlorophenoxyacetic acid - KIN Kinetin - PVP Polyvinylpyrrolidone - HHS Heidenhain's Haematoxylin and safranin     

Phenol-mediated improved performance of active biomass for treatment of distillery wastewater

Activated sludge from a wastewater treatment plant consists of a consortium of microbes that utilize various organic molecules including persistent organic pollutants for their survival. Phenolic compounds and their derivatives along with dibenzofuran (DBF) are found as dominating pollutants in distillery waste. The acclimatization process leads to selective enrichment of the microbial community; and in this study, we report the acclimatizing effect of phenol on improving the treatment efficiency of two different distillery sludges—sludge from conventional aeration tanks (CAT), and from an extended aeration tank (EAT). The adaptation-dependent performance of activated biomass was studied by monitoring the increase in colony-forming units (CFUs) on mineral media and the utilization pattern for phenol (300×10³ and 530×10³ CFU for CAT and EAT sludge, respectively) and DBF (260×10³ and 430×10³ CFU for CAT and EAT sludge, respectively). The study showed that the acclimatization process remarkably improved the performance sludge for treatment of distillery wastewater. There was an improvement in chemical oxygen demand (COD) removal efficiency from 19% (unacclimatized sludge) to 31% in the case of acclimatized sludge (raw wastewater), which improved further to 82% and 87% with dilution of wastewater by 10 times (0.1×) and by 50 times (0.02×), respectively. Highest growth yields were observed with 0.1× wastewater (0.324 and 0.308 g g⁻¹ d⁻¹ for CAT and EAT sludges, respectively), while lower values are reported for the remaining two forms of wastewater. The study proposes that acclimatization step could be included as part of a treatment plant where the activated biomass could be intermittently metabolically charged by exposing it to selected molecules to increase treatment efficiency.     

Target highlights in CASP13: Experimental target structures through the eyes of their authors

The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP13 experiment.     

Lactic dehydrogenase activity and cellular localization of several dehydrogenases in Neurospora and Allomyces

Summary Lactic dehydrogenase (LDH) activity has been cytochemically localized and its activity measured in wild-type and mutant strains of Neurospora crassa and male and female hybrids of Allomyces.In all strains, less intracellular staining is found, by oxidative assay of lactic dehydrogenase, ethanol dehydrogenase and a few other dehydrogenases, in the hyphal tips than in the older regions of the hyphae.The extractible activity of LDH, assayed reductively in the soluble fraction, is much greater in Allomyces than Neurospora. In Allomyces the least activity is found in the female differentiated strain. The male differentiated strain and especially the vegetative cultures of both strains have much more activity. In Neurospora, conidiating cultures have unexpectedly more activity than vegetative cultures. The crisp mutant which forms increased numbers of conidia has more activity than the wild-type which, in turn, has more activity than the aconidial fluffy mutant.