Identification of low-density Triton X-100-insoluble plasma membrane microdomains in higher plants.

Low density Triton X-100-insoluble plasma membrane microdomains can be isolated from different mammalian cell types and are proposed to be involved in membrane trafficking, cell morphogenesis and signal transduction. Heterotrimeric G-proteins and their receptors are often associated with such domains, suggesting that these structures are involved in G-protein-coupled signaling. Here we report that detergent-insoluble plasma membrane microdomains also exist in higher plants and contain about 15% of membrane-bound heterotrimeric G-protein beta-subunit (Gbeta). Plasma membrane microdomains were isolated from tobacco leaves. They have low buoyant density relative to the surrounding plasma membrane, and are insoluble in Triton X-100 at 4 degrees C. Detergent-insoluble vesicles were examined by freeze-fracture electron microscopy. They have sizes in the range 100-400 nm, and often contain aggregated protein complexes. The majority of plasma membrane proteins cannot be detected in the Triton X-100-insoluble fraction, while few polypeptides are highly enriched. We identified six proteins with molecular masses of 22, 28, 35, 60, 67 and 94 kDa in detergent-insoluble fractions that are glycosylphosphatidylinositol (GPI)-anchored.     

Post-mortem descent with septal implosion in Silurian nautiloids

Late Silurian nautiloids from Bohemia have either (1) thin and densely spaced septa of which many are broken and internally accumulated, or (2) thick and widely spaced septa wnich are all intact. Since the latest chamber (s) and the shell wall are undamaged, septal fragmentation occurred by implosion during postmortem sinking, with sea water rushing in through the siphuncle. The latest connecting ring(s) were more permeable than the immature ones, permitting pressure compensation in the latest chamber(s). Septal debris accumulated adapically indicating the (ultimate) sinking orientation. Depth (maxima) of the nautiloid habitats and of the Bohemian basin are estimated from the strength parameters of the broken and intact septa: brevicones — epipelagic, weak longicones — moderately shallow pelagic, strong longicones — nektobenthic, sea floor depth — several 100 m. Silurian-Nautiloids-Shell-Connecting rings-Bathymetry.     

Neuronotrophic Factors Released by C6 Glioma Cells

Glial cells have been shown previously to release factors that promote survival of central and peripheral neurons [neuronotrophic factors (NTFs)]. We have investigated the release of NTFs by C6 cells, a rat glioma cell line, under different modes of conditioning. Media conditioned in the presence or absence of serum [C6 cell conditioned media (C6CMs)] were analyzed using biological, biochemical, and immunological assays. We report that (a) nuclear and cytoskeletal proteins were not present in C6CMs, indicating that C6CM proteins result from release by C6 cells rather than from cell death; (b) C6CM contained 1-3 micrograms protein/ml, corresponding to a secretion rate of about 0.5 pg protein per cell and day; (c) C6CM contained the neurite-promoting factor laminin and low amounts of nerve growth factor; (d) the presence of fetal calf serum in the culture medium was essential for synthesis and release of NTFs; and (e) our C6CM contained at least three NTFs differing by their temporal secretory patterns and three NTFs differing by biochemical properties, indicating that C6 cells produce and secrete six different NTFs. Within these, nerve growth factor seems to be the only established NTF.     

Purification and characterization of DNA polymerases from Bacillus species.

DNA polymerases from Bacillus stearothermophilus, Bacillus caldotenax, and Bacillus caldovelox were purified by chromatography on DEAE-cellulose, phosphocellulose, and heparin-Sepharose and obtained in high yield. The enzyme preparations are free of exo- and endonuclease activities. Additional purification steps, e.g., hydrophobic interaction chromatography and chromatography on a Mono Q column or sucrose density gradient centrifugation, are needed to obtain the enzymes in the form of homogeneous 95-kDa proteins. Each of the three organisms possesses a major DNA polymerase activity comparable to DNA polymerase I. The enzymes require Mg2+ (10 to 30 mM) for optimal activity, although 0.4 mM Mn2+ could substitute for magnesium. The optimal reaction temperatures were lowest in B. stearothermophilus (60 to 65 degrees C) and about equal in B. caldovelox and B. caldotenax (65 to 70 degrees C). The thermal stabilities of the enzymes increased in the same order. The DNA polymerase from Thermus thermophilus was isolated for comparison by using a similar procedure. The enzyme was obtained as a homogeneous 85-kDa protein that was also free of exo- and endonucleolytic activities.     

The role of the GrpE homologue, Mge1p, in mediating protein import and protein folding in mitochondria.

Mge1p, a mitochondrial GrpE homologue, has recently been identified in the yeast Saccharomyces cerevisiae and a role for this protein in precursor import has been reported. To dissect the molecular mechanism of Mge1p function, conditional mge1 mutants were constructed. Cells harbouring mutant mge1 accumulated precursor proteins at restrictive temperature. Both kinetics and efficiency of import were reduced in mitochondria isolated from strains possessing mutant mge1. Binding of mitochondrial-Hsp70 (mt-Hsp70) to incoming precursor proteins was abolished at restrictive temperature. Nucleotide-dependent dissociation of mt-Hsp70 from the import component MIM44 was reduced in mitochondria from mutant mge1 strains. Furthermore, at restrictive temperature an increase of incompletely folded, newly imported protein and enhanced protein aggregation was observed in mitochondria isolated from the mutant strains. We conclude that Mge1p exerts an essential function in import and folding of proteins by controlling the nucleotide-dependent binding of mt-Hsp70 to substrate proteins and the association of mt-Hsp70 with MIM44.     

A new type of complementary chromatic adaptation exemplified byPhormidium sp. C86: Changes in the number of peripheral rods and in the stoichiometry of core complexes in phycobilisomes

The marine cyanobacterium Phormidium sp. strain C86 changes the phycobilisome type depending on light quality. Red-light-adapted cells contained hemidiscoidal phycobilisomes with a photosystem II:phycobilisome ratio of 2.2, while green-light-adapted cells exhibited hemiellipsoidal phycobilisomes with a photosystem II:phycobilisome ratio of 4.4, as determined by a combined analysis of freeze-fractured thylakoid membranes and ultrathin sections and by photochemical determinations of photosystems and phycobilisomes. Core complexes of phycobilisomes of red- and green-light-adapted cells were isolated by affinity chromatography and were subsequently separated into two allophycocyanin-containing fractions. The high-molecular-weight fraction, with a sedimentation coefficient of 24 S and a calculated mol. wt. of 860,000, contained complexes of the quaternary structure (α^AP ₉β^AP ₈β^19.5AP)₂· (L_CM)₂ and tricylindrical shape, previously designated AP_CM. This fraction was similar in size in red- and green-light-adapted cells; however, differences were detected in the low-molecular-weight allophycocyanin fraction containing the "trimeric" complexes with a sedimentation coefficient of 6 S. As shown by comparison of spectral and stoichiometric data of intact phycobilisomes and isolated core complexes, the amount of the α^APB-containing core complex (α^AP ₂α^APBβ^AP ₃) · L_C ¹⁰ was greater in core fractions of green-light phycobilisomes, whereas the amount of the core complexes (α^AP ₃β^AP ₃) · L_C ¹⁰, designated AP · L_C ¹⁰, was higher in cores of red-light phycobilisomes. Phormidium sp. is the first organism examined that exhibits a new type of complementary chromatic adaptation by altering the composition of the phycobilisome core and the number and composition of peripheral rods and by changing the ratio of photosystem II to phycobilisomes. A model summarizing the structural consequences of the results is presented. Received: 5 December 1995 / Accepted: 10 April 1995     

Bioventing of diesel oil-contaminated soil: Comparison of degradation rates in soil based on actual oil concentration and on respirometric data

The effects of bioventing, nutrient addition and inoculation with an oil-degrading bacterium on biodegradation of diesel oil in unsaturated soil were investigated. A mesocosm system was constructed consisting of six soil compartments each containing 6 m³ of naturally contaminated soil mixed 11 with silica sand, resulting in a diesel oil content of approximately 2000 mg kg^–1. Biodegradation was monitored over 112 days by determining the actual diesel oil content of the soil and by respirometric tests. The best agreement between calculations of degradation rates based upon the two methods was in July, when venting in combination with nutrient addition resulted in degradation rates of 23 mg kg^–1 day^–1 based on actual oil concentration in the soil and 33 mg kg^–1 day^–1 calculated from respirometric data. In September, these rates decreased to 9 and 1.4 mg kg^–1 day^–1, and in October the degradation rates were 5 and 0.7 mg kg^–1 day^–1 based upon the two methods. The average ambient temperature during the respirometric tests was 14,10 and 2°C in July, September and October, respectively. The combination of venting and nutrient addition resulted in an average residual oil content of the soil of 380 mg kg^–1. Neither venting alone nor inoculation enhanced oil degradation. The respiratory quotient averaged 0.40. The oil composition changed following degradation resulting in the unresolved complex mixture constituting up to 96% of the total oil content at the end of the experimental period.     

Temperature regulation of anaerobic degradation of organic matter

Anaerobic degradation of organic matter follows similar pathways in digesters and anaerobic freshwater sediments. The responsible microorganisms are linked in a complex food web, where short chain fatty acids and H₂ are important intermediates. Degradation of short-chain fatty acids is endothermic under standard conditions and is only possible at low H₂ partial pressures maintained by exothermic methanogenesis. The coupling between these endothermic and exothermic processes is delicate, and hence sensitive to environmental changes such as temperature variations. The effect of temperature on thermodynamics and on kinetics of these and other anaerobic degradation processes with emphasis on freshwater ecosystems is discussed.The author is with the Department of General Microbiology, Institute of Molecular Biology, University of Copenhagen, Sølvgade 83 H, DK-1307 Copenhagen K, Denmark     

Comparison of nuclear DNA content of rodlet cells and erythrocytes in some freshwater teleosts

DNA of rodlet cells and erythrocytes from three species of freshwater teleosts, Semotilus atromaculatus atromaculatus, Catostomus commersoni and Cyprinus carpio , was stained with the Feulgen reaction and examined by microdensitometry. Rodlet cells showed nuclear DNA content significantly different from erythrocytes of the same species, but the difference was less than a factor of C, assuming that erythrocytes reflect the normal 2C genome of somatic cells. In two species, S. atromaculatus and C. carpio , the rodlet cell nuclei contained less DNA than the erythrocytes; in C. commersoni they contained more. The identity of the rodlet cell is unknown; the results of these experiments lead to the rejection of the hypothesis that rodlet cells and erythrocytes of a species have the same DNA content, i.e. that the rodlet cell is a normal somatic component of fish tissue.