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31.
Landegren U Schallmeiner E Nilsson M Fredriksson S Banér J Gullberg M Jarvius J Gustafsdottir S Dahl F Söderberg O Ericsson O Stenberg J 《Journal of molecular recognition : JMR》2004,17(3):194-197
Procedures and reagents are needed to specifically detect all the macromolecules that are being identified in the course of genome projects. We discuss how this challenge may be met using a set of ligation-based reagents termed padlock probes and proximity ligation probes. These probes include elements with affinity for specific nucleic acid and protein molecules, respectively, along with unique identifier DNA sequence elements that encode the identity of the recognized target molecules. The information content of DNA strands that form in the detection reactions are recorded after amplification, allowing the recognized target molecules to be identified. The procedures permit highly specific solution-phase or localized analyses of large sets of target molecules as required in future molecular analyses. 相似文献
32.
Cusack KP Arnold LD Barberis CE Chen H Ericsson AM Gaza-Bulseco GS Gordon TD Grinnell CM Harsch A Pellegrini M Tarcsa E 《Bioorganic & medicinal chemistry letters》2004,14(22):5503-5507
Compounds that contain an alpha,beta-unsaturated carbonyl moiety are often flagged as potential Michael acceptors. All alpha,beta-unsaturated carbonyl moieties are not equivalent, however, and we sought to better understand this system and its potential implications in drug-like molecules. Measurement of the (13)C NMR shift of the beta-carbon and correlation to in vitro results allowed compounds in our collection to be categorized as potential Michael acceptors, potential substrates for NADPH, or as photoisomerizable. 相似文献
33.
We have developed a method, using laser, optical tweezers and direct microscopic analysis of reproductive potential and membrane integrity, to assess single-cell viability in a stationary-phase Escherichia coli population. It is demonstrated here that a reduction in cell integrity, determined by using the fluorescent nucleic acid stain propidium iodide, correlated well with a reduction in cell proliferating potential during the stationary-phase period studied. Moreover, the same cells that exhibited reduced integrity were found to be the ones that failed to divide upon nutrient addition. A small but significant number of the intact cells (496 of 7,466 [6.6%]) failed to replicate. In other words, we did not find evidence for the existence of a large population of intact but nonculturable cells during the stationary-phase period studied but it is clear that reproductive ability can be lost prior to the loss of membrane integrity. In addition, about 1% of the stationary-phase cells were able to divide only once upon nutrient addition, and in a few cases, only one of the two cells produced by division was able to divide a second time, indicating that localized cell deterioration, inherited by only one of the daughters, may occur. The usefulness of the optical trapping methodology in elucidating the mechanisms involved in stationary-phase-induced bacterial death and population heterogeneity is discussed. 相似文献
34.
35.
Maria A. Argiriadi Anna M. Ericsson Christopher M. Harris David L. Banach David W. Borhani David J. Calderwood Megan D. Demers Jennifer DiMauro Richard W. Dixon Jennifer Hardman Silvia Kwak Biqin Li John A. Mankovich Douglas Marcotte Kelly D. Mullen Baofu Ni M. Pietras Ramkrishna Sadhukhan Silvino Sousa Medha J. Tomlinson Robert V. Talanian 《Bioorganic & medicinal chemistry letters》2010,20(1):330-333
MK2 is a Ser/Thr kinase of significant interest as an anti-inflammatory drug discovery target. Here we describe the development of in vitro tools for the identification and characterization of MK2 inhibitors, including validation of inhibitor interactions with the crystallography construct and determination of the unique binding mode of 2,4-diaminopyrimidine inhibitors in the MK2 active site. Use of these tools in the optimization of a potent and selective inhibitor lead series is described in the accompanying Letter. 相似文献
36.
Christopher M. Harris Anna M. Ericsson Maria A. Argiriadi Claude Barberis David W. Borhani Andrew Burchat David J. Calderwood George A. Cunha Richard W. Dixon Kristine E. Frank Eric F. Johnson Joanne Kamens Silvia Kwak Biqin Li Kelly D. Mullen Denise C. Perron Lu Wang Neil Wishart Xiaoyun Wu Xiaolei Zhang Robert V. Talanian 《Bioorganic & medicinal chemistry letters》2010,20(1):334-337
We describe structure-based optimization of a series of novel 2,4-diaminopyrimidine MK2 inhibitors. Co-crystal structures (see accompanying Letter) demonstrated a unique inhibitor binding mode. Resulting inhibitors had IC50 values as low as 19 nM and moderate selectivity against a kinase panel. Compounds 15, 31a, and 31b inhibit TNFα production in peripheral human monocytes. 相似文献
37.
Moya M. Smith Zerina Johanson Thomas Butts Rolf Ericsson Melinda Modrell Frank J. Tulenko Marcus C. Davis Gareth J. Fraser 《Proceedings. Biological sciences / The Royal Society》2015,282(1805)
Ray-finned fishes (Actinopterygii) are the dominant vertebrate group today (+30 000 species, predominantly teleosts), with great morphological diversity, including their dentitions. How dental morphological variation evolved is best addressed by considering a range of taxa across actinopterygian phylogeny; here we examine the dentition of Polyodon spathula (American paddlefish), assigned to the basal group Acipenseriformes. Although teeth are present and functional in young individuals of Polyodon, they are completely absent in adults. Our current understanding of developmental genes operating in the dentition is primarily restricted to teleosts; we show that shh and bmp4, as highly conserved epithelial and mesenchymal genes for gnathostome tooth development, are similarly expressed at Polyodon tooth loci, thus extending this conserved developmental pattern within the Actinopterygii. These genes map spatio-temporal tooth initiation in Polyodon larvae and provide new data in both oral and pharyngeal tooth sites. Variation in cellular intensity of shh maps timing of tooth morphogenesis, revealing a second odontogenic wave as alternate sites within tooth rows, a dental pattern also present in more derived actinopterygians. Developmental timing for each tooth field in Polyodon follows a gradient, from rostral to caudal and ventral to dorsal, repeated during subsequent loss of teeth. The transitory Polyodon dentition is modified by cessation of tooth addition and loss. As such, Polyodon represents a basal actinopterygian model for the evolution of developmental novelty: initial conservation, followed by tooth loss, accommodating the adult trophic modification to filter-feeding. 相似文献
38.
Bonafoux D Abibi A Bettencourt B Burchat A Ericsson A Harris CM Kebede T Morytko M McPherson M Wallace G Wu X 《Bioorganic & medicinal chemistry letters》2011,21(6):1861-1864
The bioisosteric replacement of the indole core of CRTH2 antagonists using thienopyrroles was investigated, resulting in potent antagonists with good selectivity over DP1. Early ADME/PK assessment of this chemotype demonstrated bioavailability in mice. 相似文献
39.
Johan Kroon Tore Ericsson Gunnar Jansson Bengt Andersson 《Tree Genetics & Genomes》2011,7(6):1099-1111
We reviewed the genetic parameter estimates carried out from 1992 to 2006 for height increment in genetic tests of Norway
spruce and Scots pine, to describe patterns of genetic variation, heritability, and genetic correlations. The material included
seedling and clonal tests in Sweden, aged between 5 and 20 years. Multiple regression was used to explore relationships between
parameter values and test environments. Results showed moderate narrow-sense heritabilities ([^(h)]2 {\hat{h}^2} : mean =0.29 in Norway spruce; mean =0.23 in Scots pine) that decreased with test site latitude for both species. In Norway
spruce, [^(h)]2 {\hat{h}^2} increased with better growth and decreased with tree age, while for Scots pine, [^(h)]2 {\hat{h}^2} increased with tree age and southward transfer. The additive genetic coefficient of variation (; mean 15%), in Norway spruce, decreased with growth as well as site latitude. in Scots pine (mean =8.5%) increased with southward transfer and more southerly test latitude. Additive and genotypic within-site
genetic age-age correlations in Norway spruce were high, with mean r
A
and r
G
of 0.92 and 0.85, respectively. Corresponding across-sites estimates were on average lower. Genetic parameters were better
expressed on favorable sites, at younger ages in Norway spruce and at older ages in Scots pine. The results imply that gain
calculations should be based on different parameters in the two species. For maximizing genetic gain in the Swedish breeding
program, testing times could be shorter for Norway spruce than for Scots pine. The investigation showed a large variation
in parameter estimates from different field experiments, highlighting the importance of testing over multiple sites. 相似文献
40.