Carbon budget and methane and nitrous oxide emissions over the growing season in a Miscanthus sinensis grassland in Tomakomai,Hokkaido, Japan

Species in the Miscanthus genus have been proposed as biofuel crops that have potential to mitigate elevated atmospheric carbon dioxide (CO₂) levels and nitrous oxide (N₂O) and methane (CH₄) emissions. Miscanthus sinensis is widespread throughout Japan and has been used for biomass production for centuries. We assessed the carbon (C) budget and N₂O and CH₄ emissions over the growing season for 2 years in a M. sinensis‐dominated grassland that was naturally established around 1972 in Tomakomai, Hokkaido, Japan, which is near the northern limit for M. sinensis grassland establishment on Andisols. Average C budget was ?0.31 Mg C ha^?1, which indicates C was released from the grassland ecosystem to the atmosphere. Dominant components in the C budget appeared to be aboveground net primary production of plants (1.94–2.80 Mg C ha^?1) and heterotrophic respiration (2.27–3.11 Mg C ha^?1). The measurement of belowground net primary production (BNPP) of plants in the M. sinensis grassland was extremely variable, thus only an approximate value could be calculated. Mean C budget calculated with the approximated BNPP value was 1.47 and ?0.23 Mg C ha^?1 for 2008 and 2009, respectively. Given belowground biomass (9.46–9.86 Mg C ha^?1) was 3.1–6.5 times higher than that of aboveground biomass may provide additional evidence suggesting this grassland represents a C sink. Average CH₄ emissions across years of ?1.34 kg C ha^?1 would indicate this grassland acts as an atmospheric CH₄ sink. Furthermore, average N₂O emissions across years were 0.22 kg N ha^?1. While the site may contribute N₂O to the atmosphere, this value is lower compared with other grassland types. Global warming potential calculated with the approximated BNPP value was ?5.40 and 0.95 Mg CO₂ Eq ha^?1 for 2008 and 2009, respectively, and indicates this grassland could contribute to mitigation of global warming.     

Congruent patterns of lineage diversity in two species complexes of planktonic crustaceans,Daphnia longispina (Cladocera) and Eucyclops serrulatus (Copepoda), in East European mountain lakes

Cladocerans and copepods are globally important freshwater zooplankton groups, differing in reproductive modes and dispersal abilities. We compared genetic variation of two common taxa of these crustaceans, the Daphnia longispina species complex (known to harbour multiple cryptic lineages) and Eucyclops serrulatus (morphologically and ecologically variable morphospecies), in lakes of ten Eastern European mountain ranges. We expected to discover cryptic lineages in both groups, and to observe different geographical patterns of diversity because of differences in life cycles. Within E. serrulatus, limited sampling through lowland habitats indeed showed the presence of eight highly divergent clades, probably cryptic species, but most of these were not found in the studied mountain lakes. Such a pattern was congruent with the diversity of the D. longispina complex. Regional coexistence of multiple clades within respective species complexes (two in Eucyclops and three in Daphnia) was observed only in the Tatra Mountains (on the Polish?Slovak border). In all other studied mountain ranges (in the Balkans), only single lineages of Daphnia and Eucyclops, respectively, were present, showing similar intraspecific patterns and no evidence for stronger dispersal limitation in Eucyclops than in Daphnia. Our results indicate that substantial cryptic variation may be expected in seemingly widespread copepod taxa. However, detection of cryptic lineages is not a general pattern in mountain lakes, although these habitats harbour substantial genetic diversity in crustacean zooplankton. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 754–767.     

Using stable isotopes to test for trophic niche partitioning: a case study with stream salamanders and fish

1. Stream salamanders and fish often co‐occur even though fish prey on and outcompete salamanders. However, the mechanisms that allow palatable salamanders to coexist with fish are unknown. 2. We tested mechanisms in the field that promote coexistence between Idaho giant salamanders (Dicamptodon aterrimus) and stream salmonid fishes in headwater streams. Previous research in this system indicated that salamander dispersal did not promote coexistence with fish. We tested the hypothesis that D. aterrimus shift their diet when they occur with fish, facilitating coexistence through local niche partitioning. 3. We used nitrogen and carbon stable isotopes to describe the trophic niche of D. aterrimus and fish in three co‐occurring populations of salamanders and fish and three populations of salamanders without fish. We used two approaches to quantify trophic niche partitioning with stable isotopes: 95% kernel density estimators and isotopic mixing models. 4. We found that salamanders and fish were generalists that consumed aquatic invertebrates primarily, but both species were also cannibalistic and predatory on one another. We also found no support for trophic niche partitioning as a coexistence mechanism because there were no differences in the trophic niche metrics among salamander populations with and without fish. 5. Although we did not identify mechanisms that facilitate salamander and fish coexistence, our empirical data and use of novel approaches to describe the trophic niche did yield important insights on the role of predator–prey interactions and cannibalism as alternative coexistence mechanisms. In addition, we found that 95% kernel estimators are a simple and robust method to describe population‐level measure of trophic structure.     

Further progress on the phylogeny of Noctuoidea (Insecta: Lepidoptera) using an expanded gene sample

Major progress has been made recently toward resolving the phylogeny of Noctuoidea, the largest superfamily of Lepidoptera. However, numerous questions and weakly supported nodes remain. In this paper we independently check and extend the main findings of multiple recent authors by performing maximum‐likelihood analyses of 5–19 genes (6.7–18.6 kb) in 74 noctuoids representing all the families and a majority of the subfamilies. Our results strongly support the six family system of Zahiri et al., with the former Lymantriidae and Arctiidae subsumed within the huge family Erebidae, and Noctuidae restricted largely to the subfamilies with so‐called trifine hindwing venation. Our data also strongly corroborate monophyly of the set of four families with quadrifid forewing venation, to the exclusion of Notodontidae, and removal from the latter of Oenosandridae. Other among‐family relationships, however, remain unsettled. Our evidence is equivocal on the position of Oenosandridae, which are sister group to either Notodontidae alone or to all other noctuoids. Like other recent nuclear gene studies, our results also provide no strong support for relationships among the four quadrifid forewing families. In contrast, within families our analyses significantly expand the list of robustly resolved relationships, while introducing no strong conflicts with previous molecular studies. Within Notodontidae, for which we present the largest molecular taxon sample to date, we find strong evidence for polyphyly for some, or all, recent definitions of the subfamilies Thaumetopoeinae, Pygaerinae, Notodontinae and Heterocampinae. Deeper divergences are incompletely resolved but there is strong support for multiple ‘backbone’ nodes subtending most of the subfamilies studied. Within Erebidae, we find much agreement and no strong conflict with a recent previous study regarding relationships among subfamilies, and somewhat stronger support. Although many questions remain, the two studies together firmly resolve positions for over half the subfamilies. Within Noctuidae, we find no strong conflict with previous molecular studies regarding relationships among subfamilies, but much stronger resolution along the ‘backbone’ of the phylogeny. Combining information from multiple studies yields strongly resolved positions for most of the subfamilies. Finally, our results strongly suggest that the tribes Pseudeustrotiini and Prodeniini, currently assigned to the largest subfamily, Noctuinae, do not belong there. In sum, our results provide additional corroboration for the main outlines of family‐level phylogeny in Noctuoidea, and contribute toward resolving relationships within families.     

Performance of Myrmica ant colonies is correlated with the presence of social parasites

1. The performance of ant colonies depends on different factors such as nest site, colony structure or the presence of pathogens and social parasites. Myrmica ants host various types of social parasites, including the larvae of Maculinea butterflies and Microdonmyrmicae (Schönrogge) hoverfly. How these social parasites affect host colony performance is still unexplored. 2. It was examined how the presence of Maculinea teleius Bergsträsser, Maculinea alcon (Denis & Schiffermüller), and M. myrmicae larvae, representing different feeding and growth strategies inside host colonies, is associated with worker survival, the number of foragers, and colony productivity parameters such as growth and reproduction. 3. It was found that the presence of social parasites is negatively associated with total colony production and the production of ant larvae and gynes. Male production was lower only in nests infested by M. teleius, whereas the number of worker pupae was significantly higher in all types of infested colonies than in uninfested colonies. Laboratory observations indicated that nests infested by Maculinea larvae are characterised by a higher number of foragers compared to uninfested nests but we did not find differences in worker survival among nest types. 4. The observed pattern of social parasite influence on colony productivity can be explained by the feeding strategies of parasitic larvae. The most negative effect was found for M. teleius, which feeds on the largest host brood and eliminates a high number of sexual forms. The strong, adverse influence of all studied parasite species on gyne production may result in low queen production in Myrmica populations exposed to these social parasites.     

Die Vaskularisation der Kiemen von Myxine glutinosa L. (Cyclostomata)

The angioarchitecture of the gills in Myxine glutinosa L. was studied by scanning electron microscopy of vascular corrosion casts (methylmethacrylate). It was found that the afferent branchial artery may be connected to the sinus peribranchialis by a papilla. The sinus is connected to delicate vessels and sinuses, which are interposed between meridionally arranged radial arteries. These delicate vascular formations continue into the interior of the gill and form a plexus on both poles of the gill folds. Light and scanning electron microscopical studies on the vascular endothelium of the afferent vessels of the gill lamellae reveal rounded endothelial cells, which are characterized by a high content of granula, by long cellular processes and by bridge-formations towards neighbouring cells. Supporting columns within the vascular system of the lamellae were found to be set up by several spirally arranged cells. SEM observations reveal goblet cells and numerous superficial epithelial cells with various numbers of microvilli and microridges forming the epithelial surface of the gill folds.     

A new genus of Encyrtidae (Hymenoptera: Chalcidoidea) from India

A new genus, probably related to Anagyrus, is erected for a new species parasitic on mealy-bugs, the male and female of which are described.     

gerud 2.0: a computer program for the reconstruction of parental genotypes from half‐sib progeny arrays with known or unknown parents

Large groups of related progeny, as can be collected from discrete egg masses or fruits, present excellent opportunities for parentage analysis by allowing the reconstruction of parental genotypes. Current techniques of parental genotypic reconstruction require the knowledge of at least one parental genotype. Here, I present a new computer program that reconstructs parental genotypes when no parents are known, provided that the progeny array contains only full and half siblings. The prospects for successfully reconstructing parental genotypes for such progeny arrays with unknown parents are nearly as good as those for the case when one parent is known with certainty.     

STRATOCLADISTICS AND EVALUATION OF EVOLUTIONARY MODES IN THE FOSSIL RECORD: AN EXAMPLE FROM THE AMMONITE GENUS SEMIFORMICERAS

Abstract:  At least two predominating modes of evolution have been proposed for the Early Tithonian oppeliid ammonite genus Semiformiceras , including phyletic transformation of a single lineage ( S. darwini – S. semiforme – S. fallauxi ) and, most recently, a bifurcating or cladogenetic model of speciation. We discuss methodological obstacles in past studies that have focused on specific modes of evolution, and offer a reanalysis of the morphological data first presented by Cecca and Rouget [ Palaeontology , 49 , 1069–1080] using the stratocladistic software StrataPhy. The present analysis utilizes 11 ammonite taxa and 15 characters (14 morphological and one stratigraphic) and assesses all previous phylogenetic hypotheses, including those that recruit OTUs in ancestral or 'nodal' positions, without excluding evolutionary modes. The results cast doubt on the monophyly of S. darwini , S. semiforme and S. fallauxi , but do not follow completely the direct anagenetic progression proposed by stratophenetic hypotheses. We conclude that stratocladistics is a helpful tool for elucidating the extent of anagenesis and cladogenesis in extinct lineages owing to its capacity to reconstruct phylograms in their temporal framework, and to assess the distinctness and monophyly, not just of clades but of the OTUs themselves. Ultimately, this study addresses the novel utility of computer-assisted stratocladistic analysis in assessing evolutionary modes beyond the reach of traditional cladistic-based methodologies.