Growing coffee: Psilanthus (Rubiaceae) subsumed on the basis of molecular and morphological data; implications for the size,morphology, distribution and evolutionary history of Coffea

Morphological and molecular phylogenetic studies show that there is a close relationship between Coffea and Psilanthus. In this study we reassess species relationships based on improved species sampling for Psilanthus, including P. melanocarpus, a species that shares morpho‐taxonomic characters of both genera. Analyses are performed using parsimony and Bayesian inference, on sequence data from four plastid regions [trnL–F intron, trnL–F IGS, rpl16 intron and accD–psa1 intergenic spacer (IGS)] and the internal transcribed spacer (ITS) region of nuclear ribosomal DNA (ITS 1/5.8S/ITS 2). Several major lineages with geographical coherence, as identified in previous studies based on smaller and larger data sets, are supported. Our results also confirm previous studies showing that the level of sequence divergence between Coffea and Psilanthus species is negligible, particularly given the much longer branch lengths separating other genera of tribe Coffeeae. There are strong indications that neither Psilanthus nor Coffea is monophyletic. Psilanthus melanocarpus is nested with the Coffea–Psilanthus clade, which means that there is only one critical difference between Coffea and Psilanthus; the former has a long‐emergent style and the latter a short, included style. Based on these new data, in addition to other systematically informative evidence from a broad range of studies, and especially morphology, Psilanthus is subsumed into Coffea. This decision increases the number of species in Coffea from 104 to 124, extends the distribution to tropical Asia and Australasia and broadens the morphological characterization of the genus. The implications for understanding the evolutionary history of Coffea are discussed. A group of closely related species is informally named the ‘Coffea liberica alliance’. © 2011 The Linnean Society of London, Botanical Journal of the Linnean Society, 2011, 167 , 357–377.     

Dynamic palaeoredox and exceptional preservation in the Cambrian Spence Shale of Utah

Garson, D.E., Gaines, R.R., Droser, M.L., Liddell, W.D. & Sappenfield, A. 2011: Dynamic palaeoredox and exceptional preservation in the Cambrian Spence Shale of Utah. Lethaia, Vol. 45, pp. 164–177. Burgess Shale‐type faunas provide a unique glimpse into the diversification of metazoan life during the Cambrian. Although anoxia has long been thought to be a pre‐requisite for this particular type of soft‐bodied preservation, the palaeoenvironmental conditions that regulated extraordinary preservation have not been fully constrained. In particular, the necessity of bottom water anoxia, long considered a pre‐requisite, has been the subject of recent debate. In this study, we apply a micro‐stratigraphical, ichnological approach to determine bottom water oxygen conditions under, which Burgess Shale‐type biotas were preserved in the Middle Cambrian Spence Shale of Utah. Mudstones of the Spence Shale are characterized by fine scale (mm‐cm) alternation between laminated and bioturbated intervals, suggesting high‐frequency fluctuations in bottom water oxygenation. Whilst background oxygen levels were not high enough to support continuous infaunal activity, brief intervals of improved bottom water oxygen conditions punctuate the succession. A diverse skeletonized benthic fauna, including various polymerid trilobites, hyolithids, brachiopods and ctenocystoids suggests that complex dysoxic benthic community was established during times when bottom water oxygen conditions were permissive. Burgess Shale‐type preservation within the Spence Shale is largely confined to non‐bioturbated horizons, suggesting that benthic anoxia prevailed in intervals, where these fossils were preserved. However, some soft‐bodied fossils are found within weakly to moderately bioturbated intervals (Ichnofabric Index 2 and 3). This suggests that Burgess Shale‐type preservation is strongly favoured by bottom water anoxia, but may not require it in all cases. □Anoxia, Burgess Shale, Burgess Shale type‐preservation, Langston Formation, Spence Shale Member, Utah.     

Chukar Seasonal Survival and Probable Causes of Mortality

ABSTRACT Chukars (Alectoris chukar) have been introduced throughout the world. Despite this widespread distribution, limited information regarding seasonal survival, probable causes of mortality, and other basic life history characteristics is available to manage this harvested species. We estimated the probable cause of mortality for chukars with radiotransmitters by examining evidence at kill sites. We used model selection to evaluate influences of seasonal effects (fall raptor migration, peak migration, and reproductive period), demographic effects (age and sex), radio weight, and year on survival of chukars in western Utah, USA, by using a known-fate model in Program MARK and 2 years of telemetry data. We captured and randomly fitted 125 individual chukars with 2 different-sized radiotransmitters (97 F, 20 M, 8 sex undetermined). Model selection results showed our top 3 models accounted for 99% of Akaike's Information Criterion weight, and each one had seasonal and year effects. Two-week survival estimates were lower during peak raptor migration in both years and significantly (P < 0.05) so in year 2 (2-week S = 0.87, 95% CI = 0.77–0.94) compared with other year 2 intervals (2-week S > 0.91). Annual survival was lower in 2005 (S = 0.03, 95% CI = 0.01–0.09) compared with 2006 (S = 0.19, 95% CI = 0.12–0.31). We documented 95 deaths and classified 56% unknown, 33% avian predation, 8% hunter harvest, and 3% mammalian predation. Our research suggests that predation on chukars is substantial during the peak fall raptor migratory period and that the hunting take under current regulations is relatively small and likely compensatory.     

MODES OF REPRODUCTION IN RECENT AND FOSSIL CUPULADRIID BRYOZOANS

Abstract:  Cupuladriid cheilostome bryozoans can make new colonies both sexually and asexually. Sexual (aclonal) colonies are derived from larvae while asexual (clonal) colonies result from the fragmentation or division of larger colonies. A number of specialised morphologies exist which either enhance or discourage clonality, and cupuladriids preserve these in their skeletons, meaning that it is possible to count the abundances of individual modes of reproduction in fossil assemblages, and thus measure the mode and tempo of evolution of life histories using fossil colonies. In this paper we categorise, illustrate and describe the various clonal and aclonal methods of propagation in cupuladriids through the Cenozoic. Sexual reproduction is the only aclonal method of propagation, while four clonal methods are described comprising: (1) mechanical fragmentation, (2) autofragmentation, (3) colonial budding and (4) peripheral fragmentation. The processes involved in each are discussed and we explain how their prevalence can be measured in the fossil record using preservable morphologies. Compiling a record of the occurrence and distribution of the various modes of propagation through time and space we discover a general trend of evolution towards more complex modes in all three cupuladriid genera, but a geologically recent extinction of some modes of propagation that has left the present-day assemblage relatively depauperate. We see striking similarities in the general timing of expansion of modes of reproduction between the two most important genera, Cupuladria and Discoporella , although it is clear that Discoporella evolved a much wider range of special morphologies either to enhance or to discourage clonality than did Cupuladria .     

Evaluation of an Aerial Survey to Estimate Abundance of Wintering Ducks in Mississippi

Abstract: Researchers have successfully designed aerial surveys that provided precise estimates of wintering populations of ducks over large physiographic regions, yet few conservation agencies have adopted these probability-based sampling designs for their surveys. We designed and evaluated an aerial survey to estimate abundance of wintering mallards (Anas platyrhynchos), dabbling ducks (tribe Anatini) other than mallards, diving ducks (tribes Aythini, Mergini, and Oxyurini), and total ducks in western Mississippi, USA. We used design-based sampling of fixed width transects to estimate population indices (Ǐ), and we used model-based methods to correct population indices for visibility bias and estimate population abundance (Ň) for 14 surveys during winters 2002–2004. Correcting for bias increased estimates of mallards, other dabbling ducks, and diving ducks by an average of 40–48% among all surveys and contributed 48–61% of the estimated variance of Ň. However, mean-squared errors were consistently less for Ň than Ǐ. Estimates of Ň met our goals for precision (CV ≤ 15%) in 7 of 14 surveys for mallards, 5 surveys for other dabbling ducks, no surveys for diving ducks, and 10 surveys for total ducks. Generally, we estimated more mallards and other dabbling ducks in mid- and late winter (Jan-Feb) than early winter (Nov-Dec) and determined that population indices from the late 1980s were nearly 3 times greater than those from our study. We developed a method to display relative densities of ducks spatially as an additional application of survey data. Our study advanced methods of estimating abundance of wintering waterfowl, and we recommend this design for continued monitoring of wintering ducks in western Mississippi and similar physiographic regions.