Complete chloroplast genome sequence of Magnolia grandiflora and comparative analysis with related species

Magnolia grandiflora is an important medicinal,ornamental and horticultural plant species.The chloroplast(cp) genome of M.grandiflora was sequenced using a 454 sequencing platform and the genome structure was compared with other related species.The complete cp genome of M.grandiflora was 159623 bp in length and contained a pair of inverted repeats(IR) of 26563 bp separated by large and small single copy(LSC,SSC) regions of 87757 and 18740 bp,respectively.A total of 129 genes were successfully annotated,18 of which included introns.The identity,number and GC content of M.grandiflora cp genes were similar to those of other Magnoliaceae species genomes.Analysis revealed 218 simple sequence repeat(SSR) loci,most composed of A or T,contributing to a bias in base composition.The types and abundances of repeat units in Magnoliaceae species were relatively conserved and these loci will be useful for developing M.grandiflora cp genome vectors.In addition,results indicated that the cp genome size in Magnoliaceae species and the position of the IR border were closely related to the length of the ycf1 gene.Phylogenetic analyses based on 66 shared genes from 30 species using maximum parsimony(MP) and maximum likelihood(ML) methods provided strong support for the phylogenetic position of Magnolia.The availability of the complete cp genome sequence of M.grandiflora provides valuable information for breeding of desirable varieties,cp genetic engineering,developing useful molecular markers and phylogenetic analyses in Magnoliaceae.     

Rescue and Preliminary Application of a Recombinant Newcastle Disease Virus Expressing Green Fluorescent Protein Gene

Based on the complete genome sequence of Newcastle disease virus (NDV) ZJI strain, seven pairs of primers were designed to amplify a cDNA fragment for constructing the plasmid pNDV/ZJI, which contained the full-length cDNA of the NDV ZJI strain. The pNDV/ZJI, with three helper plasmids, pCIneoNP, pCIneoP and pCIneoL, were then cotransfected into BSR-T7/5 cells expressing T7 RNA polymerase. After inoculation of the transfected cell culture supernatant into embryonated chicken eggs from specific-pathogen-free (SPF) flock, an infectious NDV ZJI strain was successfully rescued. Green fluorescent protein (GFP) gene was amplified and inserted into the NDV full-length cDNA to generate a GFP-tagged recombinant plasmid pNDV/ZJIGFP. After cotransfection of the resultant plasmid and the three support plasmids into BSR-T7/5 cells, the recombinant NDV, NDV/ZJIGFP, was rescued. Specific green fluorescence was observed in BSR-T7/5 and chicken embryo fibroblast (CEF) cells 48h post-infection, indicating that the GFP gene was expressed at a relatively high level. NDV/ZJIGFP was inoculated into 10-day-old SPF chickens by oculonasal route. Four days post-infection, strong green fluorescence could be detected in the kidneys and tracheae, indicating that the recombinant GFP-tagged NDV could be a very useful tool for analysis of NDV dissemination and pathogenesis.     

HIV and HCV： from Co-infection to Epidemiology, Transmission, Pathogenesis, and Treatment

Human immunodeficiency virus (HIV) is the infectious agent causing acquired immu-nodeficiency syndrome (AIDS),a deadliest scourge of human society. Hepatitis C virus (HCV) is a major causative agent of chronic liver disease and infects an estimated 170 million people worldwide,resulting in a serious public health burden. Due to shared routes of transmission,co-infection with HIV and HCV has become common among individuals who had high risks of blood exposures. Among hemophiliacs the co-infection rate accounts for 85%; while among injection drug users (IDU) the rate can be as high as 90%. HIV can accelerate the progression of HCV-related liver disease,particularly when immunodeficiency has developed. Although the effect of HCV on HIV infection is controversial,most studies showed an increase in mortality due to liver disease. HCV may act as a direct cofactor to fasten the progression of AIDS and decrease the tolerance of highly active antiretroviral therapy (HARRT). Conversely,HAART-related hepatotoxicity may enhance the progression of liver fibrosis. Due to above complications,co-infection with HCV and HIV-1 has imposed a critical challenge in the management of these patients. In this review,we focus on the epidemiology and transmission of HIV and HCV,the impact of the two viruses on each other,and their treatment.     

Phylogenetic Analysis of Homologous Proteins Encoded by UL2 and UL23 genes of Herpesviridae

The proteins encoded by the Herpesviridae β-gene play a critical role in the replication stage of the virus.In this paper,phylogenetic analyses provided evidence that some β-gene products,such as UL2 and UL23 from HSV1,have their homologous genes in its family,and also exist in prokaryotic organisms,indicating that these viruses appear to have been assembled over evolutionary time by numerous independent events of horizontal gene transfer.     

Correlated responses to artificial body size selection in growth, development, phenotypic plasticity and juvenile viability in yellow dung flies

Most life history traits are positively influenced by body size, whereas disadvantages of large body size are poorly documented. To investigate presumed intrinsic costs of large size in the yellow dung fly (Scathophaga stercoraria; Diptera: Scathophagidae), we established two replicates each of three body size laboratory selection lines (small, control and large; selection on males only), and subjected flies of the resulting extended body size range to various abiotic stresses. Response to selection was symmetrical in the small and large lines (realized h(2) = 0.16-0.18). After 24 generations of selection body size had changed by roughly 10%. Female size showed a correlated response to selection on male size, whereas sexual size dimorphism did not change. Development time also showed a correlated response as, similar to food limited flies, small line flies emerged earlier at smaller body size. At the lowest larval food limit possible, flies of all lines emerged at the same small body size after roughly the same development time; so overall phenotypic plasticity in body size and development time strongly increased following selection. Juvenile mortality increased markedly when food was extremely limited, large line flies showing highest mortality. Winter frost disproportionately killed large (line) flies because of their longer development times. Mortality at high temperatures was high but size-selective effects were inconsistent. In all environments the larger males suffered more. Initial growth rate was higher for males and at unlimited food. Small line individuals of both sexes grew slowest at unlimited larval food but fastest at limited larval food, suggesting a physiological cost of fast growth. Overall, extension of the natural body size range by artificial selection revealed some otherwise cryptic intrinsic juvenile viability costs of large size, mediated by longer development or faster growth, but only in stressful environments.     

火烧对内蒙古草原中坚韧胶衣固氮活性的影响

 坚韧胶衣(Collema tenax)是干旱和半干旱草原中常见的一种固氮地衣, 是草原生态系统中生物土壤结皮(Biological soil crust)的 主要组成部分, 对生态系统氮循环具有重要的影响。火烧作为一种干扰因子, 是草原生态系统结构和功能维持的重要因素之一。该文采用乙炔 还原法(Acetylene reduction assay), 研究了火烧对内蒙古草原生态系统中坚韧胶衣固氮活性的短期影响。结果表明, 在个体尺度上, 与对照 相比, 火烧区中地衣体烧损的坚韧胶衣固氮活性降低了42.3%, 而无烧损的个体固氮活性则升高了28.4%。这表明火烧对坚韧胶衣的固氮功能在 个体尺度上具有双重影响: 1)通过烧损地衣体、恶化地表温度和水分条件, 而抑制个体的固氮活性; 2)通过改善光照条件, 使表土养分呈现脉 冲式增高, 而促进未烧损个体的固氮活性。在种群尺度上, 火烧与对照之间固氮活性并无显著差异, 这可能是由于火烧在个体尺度上对坚韧胶 衣的固氮活性的双重影响相互抵消所致。     

CpG壳聚糖纳米颗粒对小鼠乙型肝炎疫苗免疫应答的影响

为探索高效安全的分子免疫增强剂,本实验设计合成含11个CpG基序的寡聚核苷酸(CpG ODN),制备壳聚糖纳米颗粒包裹CpG ODN,研究新型CpG ODN壳聚糖纳米颗粒(CpG-CNP)对人乙型肝炎疫苗的免疫佐剂效应.在肌注乙型肝炎疫苗免疫6周龄昆明小鼠的同时,肌注接种裸CpG ODN 30 pmol/只(A1组)和CpG-CNP 5 pmol/只(A2组),口服CpG-CNP 30 pmol/只(B组),并设生理盐水空白疫苗对照组(C组).在接种后每周采血,Sandwich ELISA检测实验小鼠IL-2、IL-4、IL-6、IgG、IgA和IgM水平以及特异性抗体(HbsAb)含量和免疫细胞数量的变化.结果 发现各实验组小鼠的白细胞介素、血清免疫球蛋白、乙肝特异抗体和外周血免疫细胞均较对照组显著增多(P<0.05);CpG-CNP肌注组小鼠血液的免疫球蛋白、特异性乙肝表面抗体和白细胞介素含量、淋巴细胞和单核细胞数量较A1组和B组显著增加(P<0.05).CpG-CNP口服组与裸CpG肌肉注射组无显著差异(P＞0.05).这些表明CpG-CNP不仅能高效诱导小鼠对乙肝疫苗的体液免疫应答,同时也显著增强其细胞免疫应答;CNP包裹可提高CpG的免疫刺激效应,减少CpG剂量,提示新CpG-CNP肌注或口服可用于HBV的免疫预防.     

Molecular and quantitative genetic differentiation across Europe in yellow dung flies

Relating geographic variation in quantitative traits to underlying population structure is crucial for understanding processes driving population differentiation, isolation and ultimately speciation. Our study represents a comprehensive population genetic survey of the yellow dung fly Scathophaga stercoraria, an important model organism for evolutionary and ecological studies, over a broad geographic scale across Europe (10 populations from the Swiss Alps to Iceland). We simultaneously assessed differentiation in five quantitative traits (body size, development time, growth rate, proportion of diapausing individuals and duration of diapause), to compare differentiation in neutral marker loci (F(ST)) to that of quantitative traits (Q(ST)). Despite long distances and uninhabitable areas between sampled populations, population structuring was very low but significant (F(ST) = 0.007, 13 microsatellite markers; F(ST) = 0.012, three allozyme markers; F(ST) = 0.007, markers combined). However, only two populations (Iceland and Sweden) showed significant allelic differentiation to all other populations. We estimated high levels of gene flow [effective number of migrants (Nm) = 6.2], there was no isolation by distance, and no indication of past genetic bottlenecks (i.e. founder events) and associated loss of genetic diversity in any northern or island population. In contrast to the low population structure, quantitative traits were strongly genetically differentiated among populations, following latitudinal clines, suggesting that selection is responsible for life history differentiation in yellow dung flies across Europe.     

Novel Cellulase Profile of Trichoderma reesei Strains Constructed by cbh1 Gene Replacement with eg3 Gene Expression Cassette

The filamentous fungus Trichoderma reesei is consi-dered to be the most efficient cellulase producer, and hasa long history in the production of hydrolytic enzymes,which was widely used in the food and feed industriesand recently also used in the textile,…