Efficient synthesis of pyrenylalanine

An efficient synthesis of L-3-(1'-pyrenyl)alanine (Pya), a highly fluorescent amino acid, is described. The amino acid was obtained by the classical asymmetric hydrogenation of chiral 1-acetyl-3-pyrenemethylidene-6-methyl-piperazine-2,5-dione. In the proposed improved procedure mild conditions of the synthesis were applied and the final product--N-tertbutoxycarbonyl-pyrenylalanine--was obtained in good yield. Pyrenylalanine, due to its interesting photophysical properties, can be applied as a fluorescent probe in numerous biochemical and conformational studies.     

Parallel splitting solvers for the isogeometric analysis of the Cahn-Hilliard equation

Abstract

Modeling tumor growth in biological systems is a challenging problem with important consequences for diagnosis and treatment of various forms of cancer. This growth process requires large simulation complexity due to evolving biological and chemical processes in living tissue and interactions of cellular and vascular constituents in living organisms. Herein, we describe with a phase-field model, namely the Cahn-Hilliard equation the intricate interactions between the tumors and their host tissue. The spatial discretization uses highly-continuous isogeometric elements. For fast simulation of the time-dependent Cahn-Hilliard equation, we employ an alternating directions implicit methodology. Thus, we reduce the original problems to Kronecker products of 1?D matrices that can be factorized in a linear computational cost. The implementation enables parallel multi-core simulations and shows good scalability on shared-memory multi-core machines. Combined with the high accuracy of isogeometric elements, our method shows high efficiency in solving the Cahn-Hilliard equation on tensor-product meshes.     

A new genus and species of scorpionfly (Mecoptera) from Baltic amber,with an unusually developed postnotal organ

A new genus and species of fossil scorpionflies (Mecoptera) Baltipanorpa damzeni gen. et sp.n. is described from two well‐preserved male specimens in Baltic amber (middle Eocene: Lutetian). The most characteristic feature of the new taxon is an unusually developed postnotal organ on abdominal tergum IV. This is the most extremely developed example of this organ among Mecoptera and the only observation of notal and postnotal organs among fossil scorpionflies. The following combination of characters are provided to distinguish the new genus from other Panorpidae: Sc, short; R₁ and R₂ two‐branched; A₁ joins posterior margin of wing only at same level as fork of vein Rs; unusual shape of abdomen, abdominal segments I–IV strongly reduced, abdominal segment V elongate and widened, segments VII and VIII strongly elongate; notal and postnotal organs present, strongly developed process (postnotal organ) on tergum IV, unknown in all described extant and fossil scorpionflies. Different types of notal organs of Mecoptera are compared and their function and morphology are discussed. Morphological analysis of notal and postnotal organs in extant species permits us to conclude that B. damzeni sp.n. is characterized by the most developed and complex notal organs in all Mecoptera.     

Contributions of biosurfactants to natural or induced bioremediation

The number of studies dedicated to evaluating the influence of biosurfactants on bioremediation efficiency is constantly growing. Although significant progress regarding the explanation of mechanisms behind biosurfactant-induced effects could be observed, there are still many factors which are not sufficiently elucidated. This corresponds to the fact that although positive influence of biosurfactants is often reported, there are also numerous cases where no or negative effect was observed. This review summarizes the recent finding in the field of biosurfactant-amended bioremediation, focusing mainly on a critical approach towards potential limitations and causes of failure while investigating the effects of biosurfactants on the efficiency of biodegradation and phytoextraction processes. It also provides a summary of successive steps, which should be taken into consideration when designing biosurfactant-related treatment processes.     

The effect of cysteine and superoxide dismutase on the quality of post-thawed chicken sperm

The study was conducted to determine the influence of N-acetyl-l-cysteine (NAC) and superoxide dismutase (SOD) on chicken sperm motility, plasma membrane and acrosome integrity, mitochondrial activity, lipid peroxidation (LPO) and apoptotic changes after freezing–thawing process. Semen samples from fifteen Greenlegged Partridge roosters were pooled, diluted with EK extender without antioxidants (control), or supplemented with 5 mM NAC, or 200 U/mL SOD. Samples were subjected to cryopreservation. After thawing, sperm parameters evaluated by using CASA system and flow cytometry were assessed.     

Differences and dynamic changes in the cell surface properties of three Pseudomonas aeruginosa strains isolated from petroleum-polluted soil as a response to various carbon sources and the external addition of rhamnolipids

Three Pseudomonas aeruginosa strains isolated from petroleum-polluted soil were the subject of studies concerning changes in cell surface properties. Fundamentally different reactions could be observed for each of the studied strains after a cultivation on various carbon sources. The experiments carried out during the logarithmic growth phase showed, that the changes in the cell surface hydrophobocity values were dynamic and substrate dependant. An external addition of rhamnolipids to the tested systems resulted in further shifts in the CSH values. All of the strains displayed miscellaneous phenotypic properties during MATH, sedimentation profile, Zeta potential and surface tension measurements. The obtained results lead to a conclusion, that the presence of rhamnolipids seems to be the key factor to this phenomenon, as all of the studied strains exhibited the ability to produce this biosurfactant in a different degree.     

Great spotted woodpeckers Dendrocopos major exert multiple forms of phenotypic selection on Scots pine Pinus sylvestris

Relatively few animal species extract seeds from closed conifer cones because of the forces required to spread apart or penetrate the woody scales. Those species that forage on seeds in closed cones tend to forage selectively, and therefore act as selective agents on cone structure. However, little is known about the foraging preferences and thus phenotypic selection that is exerted on conifers by many species that forage extensively on seeds in closed cones, including especially woodpeckers (Picidae). Great spotted woodpeckers Dendrocopos major are one of the main predators of seeds in closed cones of Scots pine Pinus sylvestris in central and eastern Europe. To estimate the cone preferences of these woodpeckers foraging on Scots pine, we contrasted traits of cones that were and were not foraged on by woodpeckers. Woodpeckers preferred to forage on shorter cones when scales were thin (smaller apophyses) but preferred cones of intermediate length when scales were thicker, providing evidence for correlational selection. The preference for intermediate‐sized cones indicates that woodpeckers exert disruptive selection on cone length when cones have thicker scales, but the overall selection on cone length across all scale types indicates directional favoring the evolution of longer cones. Woodpeckers avoided cones with thicker scales, which would lead to directional selection favoring the evolution of thicker scales. Preferences for intermediate‐sized cones have been found in tree squirrels and directional selection favoring the evolution of cones with thicker scales may be a common outcome of the foraging behavior of birds.