Application of principal component analysis for the optimisation of lead(II) biosorption

Current study was focused on optimising lead(II) biosorption carried out by living cells of Arthrospira platensis using Principal Component Analysis. Various experimental conditions were considered: initial metal concentration (50 and 100 mg/l), solution pH (4.0, 4.5, 5.0, 5.5) and contact time (10, 20, 30, 40, 50 and 60 min) at constant rotary speed 200 rpm. It was found that when the biomass was separated from experimental solutions by the filtration, almost 50% of initial metal dose was removed by the filter paper. Moreover, pH was the most important parameter influencing examined processes. The Principal Component Analysis indicated that the most optimum conditions for lead(II) biosorption were metal initial concentration 100 mg/l, pH 4.5 and time 60 min. According to the analysis of the first component it might be stated that the lead(II) uptake increases in time. In overall, it was found to be useful for analysing data obtained in biosorption experiments and eliminating insignificant experimental conditions. Experimental data fitted Langmuir and Dubinin–Radushkevich models indicating that physical and chemical absorption take place at the same time. Further studies are necessary to verify how sorption–desorption cycles affect A. platensis cells.     

Characterisation of biological properties of co‐composted Baltic seaweeds in germination tests

Large quantities of green seaweed, probably due to eutrophication, are found in the Baltic Sea, as well as on the beach. The tourist attractiveness of the seaside resorts is therefore reduced. The aim of this study was to find the method of the utilization of this algal biomass into fertilizers. Algae, collected from the Baltic Sea, were co‐composted with sawdust and quail manure in order to produce natural fertilizer. From the compost, algal extract was additionally produced that can act as a plant growth biostimulant. The compost and extract were biologically evaluated by the determination of the growth and multielemental composition of garden cress (Lepidium sativum) in germination tests. Additionally, the odour emissions during composting process were investigated. It was found that the dry biomass was comparable in all examined groups (compost, extract, distilled water). The average length of plants in the group with compost was 14.5% higher than in the group with the extract (difference not statistically significant). There has been observed a positive effect of the addition of compost on the content of micro‐ and macronutrients in the biomass of the cultivated plants, especially boron, calcium, iron and silicon. The averaged odour concentrations measured from the compost and extract samples were very low and reached the values of 8 and 24 ou_E/m³, respectively. According to the obtained results, by composting of seaweeds it is possible to produce a valuable organic fertilizer, which is the method of valorisation of this biomass.     

A Lithium Amide‐Borohydride Solid‐State Electrolyte with Lithium‐Ion Conductivities Comparable to Liquid Electrolytes

High ionic conductivity of up to 6.4 × 10^?3 S cm^?1 near room temperature (40 °C) in lithium amide‐borohydrides is reported, comparable to values of liquid organic electrolytes commonly employed in lithium‐ion batteries. Density functional theory is applied coupled with X‐ray diffraction, calorimetry, and nuclear magnetic resonance experiments to shed light on the conduction mechanism. A Li₄Ti₅O₁₂ half‐cell battery incorporating the lithium amide‐borohydride electrolyte exhibits good rate performance up to 3.5 mA cm^?2 (5 C) and stable cycling over 400 cycles at 1 C at 40 °C, indicating high bulk and interfacial stability. The results demonstrate the potential of lithium amide‐borohydrides as solid‐state electrolytes for high‐power lithium‐ion batteries.     

Gas Exchange of Spring Barley and Wheat Grown under Mild Water Shortage

During mild water stress (decrease of full water capacity from 60 to 35 %) net photosynthetic rate (P _N) of four spring barley and wheat genotypes was about twice lower than that for unstressed plants and was mainly limited by non-stomatal factors. Availability of CO₂ from intercellular spaces did not change significantly when stomatal conductance (g _s) decreased from 0.25-0.35 to 0.15-0.20 mol(H₂O) m⁻² s⁻¹. There may be two main processes leading to similar intercellular CO₂ concentration (c _i) in stressed and unstressed seedlings despite of twice lower P _N under mild water stress: (a) lower diffusion of CO₂ through stomata represented by lower g _s, (b) lower consumption of CO₂ by photosynthetic apparatus of stressed plants. Last factor is partially pronounced by lower response of P _N to c _i observed for stressed than for control plants. This revised version was published online in August 2006 with corrections to the Cover Date.     

Purification of glycomacropeptide from non-dialyzable fraction of sweet whey by hydrophobic interaction chromatography on phenyl-agarose

Non-dialyzable fraction of sweet whey was chromatographed on a column of phenyl-agarose equilibrated with 0.01 M sodium phosphate buffer, pH 6.8 containing 5 M NaCl. Most whey proteins were adsorbed on the column, while the glycomacropeptide (GMP) was not. Amino acid analysis of the GMP fraction showed presence of traces (each < 1 residue/peptide) of arginine, histidine and phenylalanine which are not found in GMP. The estimated yield of GMP fraction was approximately 1.6 g l^-1 of sweet whey.     

MLK4 regulates DNA damage response and promotes triple-negative breast cancer chemoresistance

Chemoresistance constitutes a major challenge in the treatment of triple-negative breast cancer (TNBC). Mixed-Lineage Kinase 4 (MLK4) is frequently amplified or overexpressed in TNBC where it facilitates the aggressive growth and migratory potential of breast cancer cells. However, the functional role of MLK4 in resistance to chemotherapy has not been investigated so far. Here, we demonstrate that MLK4 promotes TNBC chemoresistance by regulating the pro-survival response to DNA-damaging therapies. We observed that MLK4 knock-down or inhibition sensitized TNBC cell lines to chemotherapeutic agents in vitro. Similarly, MLK4-deficient cells displayed enhanced sensitivity towards doxorubicin treatment in vivo. MLK4 silencing induced persistent DNA damage accumulation and apoptosis in TNBC cells upon treatment with chemotherapeutics. Using phosphoproteomic profiling and reporter assays, we demonstrated that loss of MLK4 reduced phosphorylation of key DNA damage response factors, including ATM and CHK2, and compromised DNA repair via non-homologous end-joining pathway. Moreover, our mRNA-seq analysis revealed that MLK4 is required for DNA damage-induced expression of several NF-кB-associated cytokines, which facilitate TNBC cells survival. Lastly, we found that high MLK4 expression is associated with worse overall survival of TNBC patients receiving anthracycline-based neoadjuvant chemotherapy. Collectively, these results identify a novel function of MLK4 in the regulation of DNA damage response signaling and indicate that inhibition of this kinase could be an effective strategy to overcome TNBC chemoresistance.Subject terms: Chemotherapy, Oncogenes, Cell signalling, Breast cancer     

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

The Database of Interacting Proteins (DIP: http://dip.doe-mbi.ucla.edu) is a database that documents experimentally determined protein–protein interactions. It provides the scientific community with an integrated set of tools for browsing and extracting information about protein interaction networks. As of September 2001, the DIP catalogs ~11 000 unique interactions among 5900 proteins from >80 organisms; the vast majority from yeast, Helicobacter pylori and human. Tools have been developed that allow users to analyze, visualize and integrate their own experimental data with the information about protein–protein interactions available in the DIP database.     

Long-term Changes in Littoral Habitats and Communities in Lake Mikolajskie (Poland)

Lake Mikolajskie is seriously affected by Mikolajki town and tourism. The amount of sewage entering the littoral zone is increasing as also is the area of the artificially transformed shore. During the past 20 years the area occupied by macrophytes has decreased markedly. The decline of Phragmites australis, changes in species composition, and reductions in biomass and in the depth-range colonized by submerged plants have been observed. Simultaneously the biomass of algae has increased markedly. Animals characteristic of polluted sites have become more abundant. Changes in animal numbers result to a great extent from changes in the availability of natural substrates. Zonation of the occurrence of organisms has been observed for years on sites directly affected by sewage—quantitatively and qualitatively poor communities are found at sewage discharge points and the richer ones at a greater distance in the zone fertilized by diluted sewage.     

Structure-function relationships of glucansucrase and fructansucrase enzymes from lactic acid bacteria.

Lactic acid bacteria (LAB) employ sucrase-type enzymes to convert sucrose into homopolysaccharides consisting of either glucosyl units (glucans) or fructosyl units (fructans). The enzymes involved are labeled glucansucrases (GS) and fructansucrases (FS), respectively. The available molecular, biochemical, and structural information on sucrase genes and enzymes from various LAB and their fructan and alpha-glucan products is reviewed. The GS and FS enzymes are both glycoside hydrolase enzymes that act on the same substrate (sucrose) and catalyze (retaining) transglycosylation reactions that result in polysaccharide formation, but they possess completely different protein structures. GS enzymes (family GH70) are large multidomain proteins that occur exclusively in LAB. Their catalytic domain displays clear secondary-structure similarity with alpha-amylase enzymes (family GH13), with a predicted permuted (beta/alpha)(8) barrel structure for which detailed structural and mechanistic information is available. Emphasis now is on identification of residues and regions important for GS enzyme activity and product specificity (synthesis of alpha-glucans differing in glycosidic linkage type, degree and type of branching, glucan molecular mass, and solubility). FS enzymes (family GH68) occur in both gram-negative and gram-positive bacteria and synthesize beta-fructan polymers with either beta-(2-->6) (inulin) or beta-(2-->1) (levan) glycosidic bonds. Recently, the first high-resolution three-dimensional structures have become available for FS (levansucrase) proteins, revealing a rare five-bladed beta-propeller structure with a deep, negatively charged central pocket. Although these structures have provided detailed mechanistic insights, the structural features in FS enzymes dictating the synthesis of either beta-(2-->6) or beta-(2-->1) linkages, degree and type of branching, and fructan molecular mass remain to be identified.     

Single‐molecule dynamics of the molecular chaperone trigger factor in living cells

In bacteria, trigger factor (TF) is the molecular chaperone that interacts with the ribosome to assist the folding of nascent polypeptides. Studies in vitro have provided insights into the function and mechanism of TF. Much is to be elucidated, however, about how TF functions in vivo. Here, we use single‐molecule tracking, in combination with genetic manipulations, to study the dynamics and function of TF in living E. coli cells. We find that TF, besides interacting with the 70S ribosome, may also bind to ribosomal subunits and form TF‐polypeptide complexes that may include DnaK/DnaJ proteins. The TF‐70S ribosome interactions are highly dynamic inside cells, with an average residence time of ～0.2 s. Our results confirm that the signal recognition particle weakens TF's interaction with the 70S ribosome, and further identify that this weakening mainly results from a change in TF's binding to the 70S ribosome, rather than its unbinding. Moreover, using photoconvertible bimolecular fluorescence complementation, we selectively probe TF₂ dimers in the cell and show that TF₂ does not bind to the 70S ribosome but is involved in the post‐translational interactions with polypeptides. These findings contribute to the fundamental understanding of molecular chaperones in assisting protein folding in living cells.