A computational approach to the polymerizabilities of diallylamines

Some selected diallylamine monomers have been studied with the semiempirical PM3 method as model compounds for N,N-dialkyl-N-2-(alkoxycarbonyl)allylammonium salts, in order to build up a quantitative and qualitative relationship between the experimental cyclopolymerizabilities of the monomers and calculated parameters such as charge, energy, geometrical features, bond orders, local softness values and HOMO-LUMO gaps. The charges on nitrogen, vinyl and allyl carbons, the activation barriers, the local softness values and the HOMO-LUMO gaps are found to represent the polymerizability trend of the monomers in general. Three-dimensional structures have been proposed for the reactants and their transition states by geometry optimizations with PM3.     

Nematode–citrus plant interactions: host preference,damage rate and molecular characterization of Citrus root nematode Tylenchulus semipenetrans

• Citrus plants are host to several plant parasitic nematodes (PPNs), which are microscopic organisms. Among PPNs, the citrus root nematode, T. semipenetrans (Cobb 1913) (Tylenchida: Tylenchulidae), causes significant damage to citrus plantations worldwide. Understanding citrus nematode populations, precise identification, host preference among citrus species, and damage threshold are crucial to control T. semipenetrans. The minutiae of citrus plant–nematode interactions, nematode density and molecular nematode identification are not well understood. In this study, nematode species and density in citrus orchards, host specialization, molecular and morphological characteristics of nematodes were assessed.
• Molecular and morphological methods, host–nematode interactions, host (citrus species) preference, damage economic threshold (ET), and economic injury level (EIL) were determined using laboratory methods and field sampling. Citrus plantations in different provinces in the Mediterranean region of Turkey were investigated.
• Nematode species were identified molecularly and morphologically. ITS sequences revealed that samples were infected by citrus root nematode T. semipenetrans. The lowest nematode density was in C. reticulata in Mersin (53 2nd stage juveniles (J2s) 100 g⁻¹ soil), while the highest density was from Hatay in C. sinensis (12173 J2s 100 g⁻¹ soil). Highest citrus nematode population density was on roots of C. reticulata, followed by C. sinensis, C. limon, and C. paradisi.
• The citrus nematode is more common than was thought and population fluctuations change according to specific citrus species. Environmental conditions, host and ecological factors, such as temperature, soil pH, and soil nutrients, might influence nematode populations in citrus orchards. Investigating nematode density in diverse soil ecologies and the responses of different resistant/tolerant citrus species and cultivars to nematode populations is essential in future studies.

     

Posidonia becheri Bronn, 1828 from the Tournaisian of SE Turkey: A palaeobiogeographic enigma

The posidoniform bivalve species Posidonia becheri Bronn, 1828, has been identified for the first time in the Lower Carboniferous (Tournaisian) sandy limestone-dark grey shale deposits of Hakkari Province, south-eastern Turkey. Palaeogeographically, this area was located at the northern tip of the Gondwanan Arabian Palaeozoic platform at the southern Palaeotethyan margin during the Carboniferous. The closest localities to this new occurrence are the Lower Carboniferous of northern England, Germany (Kulm Basin), Poland (Walbrzych Basin), Northwest Belgium, Spain (Cantabrian Mountains), Portugal, and Northwest Turkey (Zonguldak Basin). All these locations are considered parts of the Avalonian or Perigondwanan terranes, and were located NW of the Palaeotethys. Hence, our new finding from the SE Palaeotethyan margin, together with the data from Morocco, indicates that this posidoniid bivalve had probably been transported by oceanic currents in its larval stage to lower palaeolatitudes (about 50° S) within the Palaeotethyan Ocean during the Early Carboniferous, or alternatively, the northern Arabian platform margin was located in lower latitudes than previously suggested.     

Caprylic acid ameliorates rotenone induced inflammation and oxidative stress in the gut-brain axis in Zebrafish

Background

Dysfunction of the gastrointestinal tract (GIT) is one of the most common non-motor symptom of Parkinson’s Disease (PD). Pathological processes causing PD were suggested to initiate in the enteric nervous system (ENS) and proceed to the central nervous system (CNS). There are studies showing that low-carbohydrate ketogenic diets can improve motor symptoms of PD. Caprylic acid (C8) is the principal fatty acid component of the medium-chain triglycerides in the ketogenic diets. In this study, we aimed to evaluate the effects of caprylic acid, in neurotoxin exposed zebrafish focusing on the relationship between intestinal and brain oxidative stress and inflammation.

Methods

Adult zebrafish were exposed to rotenone (5 μg/L) (R group) and caprylic acid (20 and 60 mg/mL) (L?+?HDCA and R?+?HDCA groups) for 30 days. At the end of 30 days locomotor activities were determined. Levels of lipid peroxidation (LPO), nitric oxide, glutathione and superoxide dismutase and glutathione S-transferase activities were determined by spectrophotometric methods and gene expressions of tnf?, il1, il6, il21, ifn? and bdnf were evaluated by RT-PCR in the brain and intestinal tissues of zebrafish.

Results

Caprylic acid ameliorated LPO, NO, SOD and the expressions of tnf?, il1, il6, il21, ifn? and bdnf in brain and intestines. Locomotor activities were only ameliorated in high dose R?+?HDCA group.

Conclusions

Caprylic acid ameliorated the neurotoxin-induced oxidative stress and inflammation both in the brain and intestines and enhanced locomotor activity in zebrafish.

Graphical abstract

     

Changes in functional composition and diversity of waterbirds: The roles of water level and submerged macrophytes

1. Water level and submerged macrophytes are critical players for the functioning of shallow lake ecosystems; understanding how waterbird communities respond to changes in both can have important implications for conservation and management. Here, we evaluated the effects of changes in water level and submerged macrophyte status on wintering waterbird community size, functional group abundances, functional diversity (FD), and community assembly by using a dataset compiled over 50 years.
2. We built generalised linear models to evaluate the effects of water level and submerged macrophyte status on the above-listed attributes of the waterbird communities by using mid-winter waterbird censuses, water level measurements, and submerged macrophyte surveys, along with submerged macrophyte macrofossil records from two shallow lakes in Turkey. Using a relevant set of functional traits, we defined functional groups, calculated four FD measures, and simulated null distributions of the FD measures for assessing assembly rules.
3. We found that macrophyte-dominated years had significantly higher abundances of waterbirds in one of the study lakes, and had more diving herbivores and omnivores in both lakes, while diving/scooping fish-eating waterbird abundance was lower in macrophyte-dominated years. Community size in Lake Beyşehir exhibited a negative association with water level; surprisingly, however, none of the functional group abundances and FD indices were significantly related to water level.
4. In our study communities, standardised effect sizes of functional richness and functional dispersion—two indices that are particularly sensitive to community assembly processes—were mostly lower than those of randomly assembled communities, which implies functional clustering. Shifts to a scarce-macrophyte state were associated with increases in these two indices, possibly due to either changes in the relative strength of environmental filtering and limiting similarity in community assembly or sampling of transitional communities. Further studies covering a wider range of the trophic/macrophyte status spectrum are needed to be certain.
5. The results of this study indicate that shifts between abundant and scarce-macrophyte states can have significant effects on wintering waterbird abundances, FD and community assembly. The results also suggest that shallow lakes in macrophyte-dominated states can support more wintering waterbirds, especially diving omnivores, some of which are globally threatened.

     

Investigation of the relationship between kinesiophobia and sensory processing in fibromyalgia patients

Abstract

Purpose/aim: The aims of this study are to investigate the relationship between kinesiophobia and sensory processing in fibromyalgia (FM) patients and obtain new information about kinesiophobia in light of these results.

Materials and methods: This study has been conducted with 82 literate subjects aged 18–65?years and diagnosed with FM based on ACR 2010 diagnostic criteria. Fibromyalgia Impact Questionnaire was used for measuring functional status in FM patients, The Tampa Scale of Kinesiophobia was used for determine the levels of kinesiophobia and Adolescent/Adult Sensory Profile was used for determine the characteristics of sensory process patterns of the individuals.

Results: Among the participants, sensory sensitivity scores of 65.85% and sensation avoiding scores of 40.24% were higher than that in the general population. Sensation seeking scores of 48.78% the subjects were lower compared to the general population. A significant and weak positive correlation was found between the kinesiophobia scores and responses of sensory sensitivity and sensation avoiding (r?=?0.23, p?=?0.04; z?=?0.29, p?=?0.01)

Conclusion: This is the first study conducted to investigate the relationship between kinesiophobia and sensory processing in fibromyalgia patients. However, different studies investigating this subject are warranted in order to be able to generalize the findings and increase the value of evidence.     

Determining the optimum model parameters for oligosaccharide production efficiency using response surface integrated particle swarm optimization method: an experimental validation study

Abstract

Glucansucrases (GTFs) catalyzes the synthesis of α-glucans from sucrose and oligosaccharides in the presence of an acceptor sugar by transferring glucosyl units to the acceptor molecule with different linkages. The acceptor reactions can be affected by several parameters and this study aimed to determine the optimal reaction parameters for the production of glucansucrase-based oligosaccharides using sucrose and maltose as the donor and acceptor sugars, respectively via a hybrid technique of Response Surface Method (RSM) and Particle Swarm Optimization (PSO). The experimental design was performed using Central Composite Design and the tested parameters were enzyme concentration, acceptor:donor ratio and the reaction period. The optimization studies showed that enzyme concentration was the most effective parameter for the final oligosaccharides yields. The optimal values of the significant parameters determined for enzyme concentration and acceptor:donor ratio were 3.45?U and 0.62, respectively. Even the response surface plots for input parameters verified the PSO results, an experimental validation study was performed for the reverification. The experimental verification results obtained were also consistent with the PSO results. These findings will help our understanding in the role of different parameters for the production of oligosaccharides in the acceptor reactions of GTFs.     

Structural properties of an engineered outer membrane protein G mutant,OmpG-16SL,investigated with infrared spectroscopy

Abstract

The structural and functional differences between wild type (WT) outer membrane protein G and its two mutants are investigated with Fourier transform infrared spectroscopy. Both mutants have a long extension to the primary sequence to increase the number of β-strands from 14 (wild type) to 16 in an attempt to enlarge the pore diameter. The comparison among proteins is made in terms of pH-dependent conformational changes and thermal stability. Results show that all proteins respond to pH change but at different degrees. At acidic environment, all proteins contain the same number of residues participated in β-sheet structure. However, at neutral pH, the mutants have less ordered structure compared to WT porin. Thermal stability tests show that mutants differ significantly from WT porin at neutral pH. Although the transition temperature is directly proportional with the amount of β-sheet content, the changes in the pre-transition phase that pave the way to structural breakdown are shown to involve interactions among charged residues by two-dimensional correlation spectroscopy analysis. Results of the analysis show that side chain interactions play an active role under increasing temperature. Both mutants have more unordered secondary structure but they respond to pH change in tertiary structure level. Findings of this study provided deeper insight on the active players in structural stability of the WT porin.

Communicated by Ramaswamy H. Sarma