UDP-N-acetylglucosamine 1-carboxyvinyl-transferase from Acinetobacter calcoaceticus

Abstract We have analyzed the sequence downstream of rpoN from Zcinetobacter calcoaceticus and identified an open reading frame encoding a protein with high similarity to UDP- N -acetylgucosamine 1-carboxyvinyl-transferase (MurZ). Multicopy plasmids encoding this enzyme conferred phosphomycin resistance to A. calcoaceticus . The polar effect of a rpoN mutation on the phosphomycin resistance level suggests that murZ is, in part, cotranscribed with rpoN . These observations confirm that A. calcoaceticus represents the first exceptin from a conserved genetic context of rpoN observed in several other Gram-negative bacteria.     

Subcellular localization of tissue polypeptide antigen and cytokeratins in epithelial cells (salivary ad mammary glands). Combined use of the cryoultramicrotomy and the protein A-gold technique

Epithelial cells from various sites and at various stages of differentiation reveal distinct cytokeratin polypeptide patterns. WE have localized these heterogeneous elements at the subcellular level in human salivary glands and in a solid tumor of the breast using a monoclonal and a polyclonal antibody against cytokeratin, and an antibody against tissue polypeptide antigen (TPA) which seems to be related to some cytokeratins. Labeling by the cytokeratin antibodies was more intense in squamous and duct cells than in acinar cells. The TPA:B1 antibody reacted predominantly with duct cells and to a lesser extent with acinar and squamous cells. A precise evaluation of the labeling pattern and a well-preserved cell structure appeared to be important factors in obtaining more detailed information about intermediate filament proteins. The cryoultramicrotomy and the protein A-gold technique are suitable for these studies.     

Protein threading by recursive dynamic programming.

We present the recursive dynamic programming (RDP) method for the threading approach to three-dimensional protein structure prediction. RDP is based on the divide-and-conquer paradigm and maps the protein sequence whose backbone structure is to be found (the protein target) onto the known backbone structure of a model protein (the protein template) in a stepwise fashion, a technique that is similar to computing local alignments but utilising different cost functions. We begin by mapping parts of the target onto the template that show statistically significant similarity with the template sequence. After mapping, the template structure is modified in order to account for the mapped target residues. Then significant similarities between the yet unmapped parts of the target and the modified template are searched, and the resulting segments of the target are mapped onto the template. This recursive process of identifying segments in the target to be mapped onto the template and modifying the template is continued until no significant similarities between the remaining parts of target and template are found. Those parts which are left unmapped by the procedure are interpreted as gaps.The RDP method is robust in the sense that different local alignment methods can be used, several alternatives of mapping parts of the target onto the template can be handled and compared in the process, and the cost functions can be dynamically adapted to biological needs.Our computer experiments show that the RDP procedure is efficient and effective. We can thread a typical protein sequence against a database of 887 template domains in about 12 hours even on a low-cost workstation (SUN Ultra 5). In statistical evaluations on databases of known protein structures, RDP significantly outperforms competing methods. RDP has been especially valuable in providing accurate alignments for modeling active sites of proteins.RDP is part of the ToPLign system (GMD Toolbox for protein alignment) and can be accessed via the WWW independently or in concert with other ToPLign tools at http://cartan.gmd.de/ToPLign.html.     

Ornithologische Notizen aus dem Ebrodelta

Zusammenfassung Im Ebrodelta ist, abgesehen von einigen Seen und Sümpfen, nur noch ein schmaler Küstenstreifen landwirtschaftlich ungenutzt. Hier hat sich ein Teil ursprünglichen Vogelreichtums erhalten, und hier wurde seit einigen Jahren eine Reihe faunistischer Erhebungen durchgeführt.Diese erbrachten mehrere erste Brutnachweise für Spanien oder die spanische Mittelmeerküste:Larus ridibundus, Sterna dougallii, St. sandvicensis, Haematopus ostralegus, Limosa limosa, Asio flammeus, Acrocephalus palustris. Als Rast- und Überwinterungsgebiet ist das Delta von großer Bedeutung, z. B. fürEgretta garzetta undPhoenicopterus ruber. Enge Beziehungen zur Camargue sind vielfach erkennbar, vielleicht sogar hinsichtlich der Ausbreitung vonLarus ridibundus undHaematopus ostralegus. Regelmäßige Wintervorkommen vonMarmaronetta angustirostris sind erwähnenswert.Es wird mit einigen bisher unbekannten Brutplätzen von Laro-Limicolen bekanntgemacht, von denen eine Kolonie vonSterna albifrons mit 300–400 Paaren besonders vermerkt sei. Für weitere Arten können Bestandsangaben gemacht werden.Dieses einzige, bedeutende Brut- und Rastgebiet zwischen Camargue und Coto Doñana ist in höchster Gefahr, durch intensivere landwirtschaftliche Nutzung und touristische Erschließung vernichtet zu werden.

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Resumen Datos ornitologicos sobre el Delta del Ebro. — Sin contar con charcas y marismas, el Delta del Ebro es una franja costera aun no explotada por la agricultura. Gracias a esto una numerosa variedad de aves ha podido mantenerse aprovechando las todavia persistentes condiciones orginarias del medio ambiente. Sobre estas aves se han venido acumulando en los ultimos años un buen acopio de observaciones.Se pudo constatar como nidificantes por primera vez en España o costas mediterranes a las siguientes especies:Larus ridibundus, Sterna dougalli, St. sandvicensis, Haematopus ostralegus, Limosa limosa, Asio flammeus, Acrocephalus palustris. Como lugar de invernada o refugio durante el paso el Delta del Ebro tiene un especial interes, por ejemplo paraEgretta garzetta yPhoenicopterus ruber. Se establecen algunas relaciones con la Camarga principalmente en cuanto a la expansión deLarus ridibundus yHaematopus ostralegus. Se mencionan invernadas regulares deMarmaronetta angustirostris. Se señalan algunos nuevos lugares de cria para Laro-Limicolas, merece destacarse el hallazgo de una colonia deSterna albifrons compuesta por unos 300–400 pares. Para otras especies se dan datos numerieos estimativos.El Delta del Ebro es un lugar unico y de gran importancia, situado entre la Camarga y el Coto de Doñana, que está hoy en peligro de desaparición debido a la colonización intensiva de la agricultura y a la creciente afluencia turistica.

     

Dose-response function for Painter's SCE-model

Summary The replication model for sister chromatid exchange (SCE), when introduced in 1980 by Painter, was claimed to be consistent with the one hit property of SCE. However, the argument offered in favour of the one hit property was based on a defective dose-response function, as shown in this paper, since dose as the independent parameter of any dose-response function was not included in the considerations. This missing part of the model's dose-response function is added and, by using Bessel functions, a formula for the complete dose-response function is presented. A re-examination of the newly derived function shows that, in the model, linearity holds only under certain restricted circumstances.     

Linking of the human immunoglobulin VK and JKCK regions by chromosomal walking.

The linking of the human VK and JKCK gene regions (abbreviations in ref. 1) by chromosomal walking is reported. Hybridization experiments with the DNA of a somatic cell hybrid containing the region between JKCK and the telomer show that none of the major VK gene clusters is located downstream of CK. The distance between the VK and JK genes was found to be 23 kb. The JK proximal VK gene is the B3 gene which is the only representative of subgroup IV in the genome. This gene and the neighbouring B2 gene (accompanying paper) are arranged in opposite orientation to JKCK and can therefore rearrange only by an inversion mechanism. This finding is used, together with previous data, to delineate the rearrangement processes in the Burkitt lymphoma derived cell line BL21 as comprising an inversion in the first and a deletion in the second step.