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1.
2.
Kristel Van Steen Nadia Tahri Geert Molenberghs 《Biometrical journal. Biometrische Zeitschrift》2004,46(2):187-202
Until recently, the most common parametric approaches to study the combined effects of several genetic polymorphisms located within a gene or in a small genomic region are, at the genotype level, logistic regressions and at the haplotype level, haplotype analyses. An alternative modeling approach, based on the case/control principle, is to regard exposures (e.g., genetic data such as derived from Single Nucleotide Polymorphisms – SNPs) as random and disease status as fixed and to use a marginal multivariate model that accounts for inter‐relationships between exposures. One such model is the multivariate Dale model. This model is based on multiple logistic regressions. That is why the model, applied in a case/control setting, leads to straightforward interpretations that are similar to those drawn in a classical logistic modeling framework. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim) 相似文献
3.
Freshly harvested seeds of Agrostemma githago L. do not germinate when they are imbibed at 20°C. The block is located in the embryo and is relased by dry storage at 20°C (after-ripening). Freshly harvested seeds complete only a small part of the processes that occur in after-ripened seeds during the lag phase prior to germination (radicle protrusion). After-ripening removed the block on lag phase processes much faster than the block on germination. This was shown both by direct determinations of the completion of lag phase processes and by measurements of the rate of axial protein synthesis, which approximately doubles when seeds are progressing through the lag phase. It is concluded that the percentage germination does not adequately reflect the extent to which the dormancy mechanism has been overcome. 相似文献
4.
Henk J. M. Aarts Johan T. den Dunnen Jack Leunissen Nicolette H. Lubsen John G. G. Schoenmakers 《Journal of molecular evolution》1988,27(2):163-172
Summary The -crystallin proteins consist of two topologically equivalent domains, each built up out of two similar motifs. They are encoded by a gene family, which already contained five members before the divergence of rodents and primates. A further gene duplication took place in each lineage. To analyze the pattern of evolution within this gene family, the coding sequences of six human genes, six rat genes, and four mouse genes were compared. Between species, a uniform rate of evolution of all regions of the protein is seen. The ratio of synonymous to nonsynonymous substitution in the human/rat or human/mouse comparison is much lower than the ratio when rat and mouse are compared indicating that the -crystallin proteins are better conserved in the rodent lineage. Within species, the regions encoding the two external motifs I and III of the protein show a greater extent of nonsynonymous substitution than the regions encoding the two internal protein motifs II and IV. The low extent of synonymous substitution between the second exons (encoding motifs I and II) of the rat -crystallin genes suggests the frequent occurrence of gene conversion. In contrast, a high extent of synonymous substitution is found in exon 3 (encoding motifs III and IV) of the rat genes. The same phenomenon is seen within the human gene family. The frequencies of occurrence of the various dinucleotides deviate less from those predicted from the frequencies of occurrence of each individual nucleotide in the second exons than in the third exons. The sequences of the third exons are significantly depleted in CpG, ApA, and GpT and enriched in CpT and GpA. 相似文献
5.
Jac M. M. J. G. Aarts Jan G. J. Hontelez Peter Fischer Ruud Verkerk Albert van Kammen Pim Zabel 《Plant molecular biology》1991,16(4):647-661
With a view to cloning the root-knot nematode resistance gene Mi in tomato by chromosome walking, we have developed a molecular probe for the tightly linked acid phosphatase-1 (Aps-1) locus. The acid phosphatase-1 allozyme (APS-11), encoded by the Aps-1
1 allele originating from Lycopersicon peruvianum, was purified to apparent homogeneity from tomato roots and suspension cells. Microsequencing of CNBr and tryptic peptides generated from APS-11 provided a partial amino acid sequence, which accounted for approximately 23% of the protein and revealed two stretches of homology with soybean proteins KSH3 and VSP27, comprising 22 matches within 26 amino acid residues. The partial amino acid sequence information enabled us to isolate a 2.4 kb genomic Aps-1
1 sequence by means of the polymerase chain reaction (PCR), primed by degenerate pools of oligodeoxyribonucleotides, synthesized on the basis of the amino acid sequences. Synthesis of the 2.4 kb PCR product was specific for genomic templates carrying the L. peruvianum Aps-1
1 allele. Crucial to the priming specificity and the synthesis of the 2.4 kb genomic sequence was the use of degenerate primer pools in which the number of different primer species was limited by incorporating deoxyinosine phosphate residues at three and four base ambiguities. In using cDNA as a template, a 490 bp sequence was obtained, indicating a high proportion of intron sequences in the 2.4 kb genomic Aps-1
1 sequence. The Aps-1
1 origin of the PCR product was confirmed by RFLP (restriction fragment length polymorphism) analysis, using both a chromosome 6 substitution line and a pair of nearly isogenic lines, differing for a small chromosomal region around the Aps-1/Mi loci. 相似文献
6.
M de Hoop S Asgeirsdottir M Blaauw M Veenhuis J Cregg M Gleeson A B Geert 《Protein engineering》1991,4(7):821-829
Alcohol oxidase of methylotrophic yeast is an FAD-containing enzyme. When in its active form, the enzyme is an octamer and located in the peroxisomes. To study the importance of FAD-binding on the activity, octamerization and intracellular localization of the enzyme, alcohol oxidase of Hansenula polymorpha was mutated in its presumed nucleotide-binding domain, which is formed by the N-terminal sequence. Whereas mutations of a glutamic acid residue (E42) reduced the stability of the octamer, it hardly affected enzyme activity and expression. However, replacements of three conserved glycines (G13, G15 and G18) and a conserved glutamic acid (E39) within the fold had severe effects. The mutations not only resulted in loss of enzyme activity but in reduced protein levels as well, probably due to decreased stability of the mutant alcohol oxidase. However, octamerization of the protein still occurred. The existence of inactive octameric proteins provides information about the formation pathway of this octameric flavoprotein. 相似文献
7.
Metastasis is a major, life-threatening complication of cancer. The bloodstream is the most important disseminative route
for cancer cells liberated from their parent tumors. Single circulating cancer cells are arrested in the microvasculature,
where the vast majority are killed by rapid or slow processes, and the relatively few survivors grow into micrometastases.
We review the underlying causes of one type of rapid cancer cell death in the microcirculation, namely, that caused by biomechanical
interactions of cancer cells with microvessel walls, which may result in cell surface membrane expansion and lethal rupture.
These lethal interactions appear to be important rate-regulators in hematogenous metastasis, and to dictate some aspects of
metastatic patterns. Although these are not the only interactions involving cancer cells, in contrast to others involving
cellular and humoral defense mechanisms, they have received comparatively little attention. 相似文献
8.
The volatile organic compounds produced during a sequence of soil incubations under controlled conditions, with either added NH4
+-N or NO3
--N, were collected and identified. The nature and relative amounts of the volatile organic compounds produced by the microorganisms in the soils were remarkably reproducible and consistent. 相似文献
9.
An ecosystems approach to base-rich freshwater wetlands,with special reference to fenlands 总被引:1,自引:1,他引:0
Geert van Wirdum 《Hydrobiologia》1993,265(1-3):129-153
A survey of base-rich wetlands in The Netherlands is presented. The main area of their occurrence is the low-lying Holocene
part of the country, until some thousand years ago a large and coherent wetland landscape: the Holland wetland. The development
of various parts of the Holland wetland into marshes, fens and bogs can be understood from hydrological relations in mire
basins, as recognized in the distinction of primary, secondary and tertiary mire basin stages. Presently, the remnants of
the Holland wetland are separate base-rich wetlands. The succession of their vegetation reflects various abiotic conditions
and human influences. Three main developmental periods are distinguished as regards these factors. The first, geological period
of mire development is seen as a post-glacial relaxation, with the inertia due to the considerable mass of wetland as a stabilizing
factor. Biological “grazing” influences, as an aspect of utilization by humans, converted base-rich wetlands to whole new
types in the second, historical period. Presently, mass and harvesting have decreased in importance, and actual successions
in terrestrializing turbaries seem to reflect rapidly changing environmental conditions. Human control could well become the
most important factor in the future development of wetland nature. The present value of open fen vegetation strongly depends
on the continuation of the historical harvesting. The development of wooded fen may help to increase the mass of wetland in
the future. Best results in terms of biodiversity are expected when their base state is maintained through water management.
The vegetation and hydrology of floating fens in terrestrializing turbaries is treated in some more detail. Various lines
and phases in the succession are distinguished. Open fen vegetation at base-rich, yet nutrient-poor sites is very rich in
species threatened elsewhere. The fast acidification of certain such fens is attributed to hydrological and management factors.
This acidification is illustrated in the profile of a floating raft sample. At the scale of these small fens, the elemental
structure comprising base-rich fen, transitional fen and bog vegetation, is not as stable as it was in the large Holland wetland.
A critical role seems to be played by the supply of bases with the water influx. The changing base state is supposed to change
the nutrient cycling to such an extent that it would be correct to call this trophic excitation of the ecosystem, rather than
just eutrophication. Eutrophication indicates a quantitative reaction to an increased nutrient supply, the internal system
being unaltered. The drainage of fens, resulting in an increased productivity of the vegetation, provides another example
of excitation, to the effect that the functional system is dramatically changed internally. 相似文献
10.