Factors affecting subject-specific finite element models of implant-fitted rat bone specimens: critical analysis of a technical protocol

The authors propose a protocol to derive finite element (FE) models from micro computer tomography scans of implanted rat bone. A semi-automatic procedure allows segmenting the images using specimen-specific bone mineral density (BMD) thresholds. An open-source FE model generator processes the segmented images to a quality tetrahedral mesh. The material properties assigned to each element are integrated from the BMD field. Piecewise, threshold-dependent density–elasticity relationships are implemented to limit the effects of metal artefacts. A detailed sensitivity study highlights the coherence of the generated models and quantifies the influence of the modelling parameters on the results. Two applications of the protocol are proposed. The stiffness of bare and implanted rat tibiae specimens is predicted by simulating three-point bending and inter-implant displacement, respectively. Results are compared with experimental tests. The mean value and the variability between the specimens are well captured in both tests.     

Effect of pathogenic mutations on the structure and dynamics of Alzheimer’s Aβ42-amyloid oligomers

Converging lines of evidence suggest that soluble Aβ-amyloid oligomers play a pivotal role in the pathogenesis of Alzheimer’s disease, and present direct effectors of synaptic and cognitive dysfunction. Three pathological E22-Aβ-amyloid point mutants (E22G, E22K, E22Q) and the deletion mutant E22Δ exhibit an enhanced tendency to form prefibrillar aggregates. The present study assessed the effect of these four mutations using molecular dynamics simulations and subsequent structural and energetic analyses. Our data shows that E22 plays a unique role in wild type Aβ, since it has a destabilising effect on the oligomer structure due to electrostatic repulsion between adjacent E22 side chains. Mutations in which E22 is replaced by an uncharged residue result in higher oligomer stability. This effect is also observed to a lesser extent for the E22K mutation and is consistent with its lower pathogenicity compared to other mutants. Interestingly, deletion of E22 does not destroy the amyloid fold but is compensated by local changes in the backbone geometry that allow the preservation of a structurally important salt bridge. The finding that all mutant oligomers investigated exhibit higher internal stability than the wild type offers an explanation for the experimentally observed enhanced oligomer formation and stability.     

Comparative Evaluation of Combined Navigated Laser Photocoagulation and Intravitreal Ranibizumab in the Treatment of Diabetic Macular Edema

Objective

To evaluate if a standardized combination therapy regimen, utilizing 3 monthly ranibizumab injections followed by navigated laser photocoagulation, reduces the number of total ranibizumab injections required for treatment of diabetic macular edema (DME).

Research Design and Methods

A 12-month, prospective comparison of 66 patients with center-involving DME: 34 patients with combination therapy were compared to 32 patients treated with ranibizumab monotherapy. All patients initially received 3 monthly ranibizumab injections (loading phase) and additional injections pro re nata (PRN). Combination therapy patients additionally received navigated laser photocoagulation after the loading phase. Main outcome measures were mean number of injections after the loading phase and change in BCVA from baseline to month 12.

Results

Navigated laser combination therapy and ranibizumab monotherapy similarly improved mean BCVA letter score (+8.41 vs. +6.31 letters, p = 0.258). In the combination group significantly less injections were required after the 3 injection loading phase (0.88±1.23 vs. 3.88±2.32, p< = 0.001). By month 12, 84% of patients in the monotherapy group had required additional ranibizumab injections as compared to 35% in the combination group (p< = 0.001).

Conclusions

Navigated laser combination therapy demonstrated significant visual gains in most patients. Retreatment rate and number of injections were significantly lower compared to ranibizumab monotherapy and compared to the results of conventional laser combination therapy previously reported in pivotal anti-VEGF studies.     

Self-Reported Empathy in Adult Women with Autism Spectrum Disorders – A Systematic Mini Review

Introduction

There is limited research on Autism Spectrum Disorders (ASD) in females. Although the empathy construct has been examined thoroughly in autism, little attention has been paid to empathy in adult women with this condition or to gender differences within the disorder.

Objective

Self-reported empathy in adult women with ASD was examined and compared to that of typically developed men and women as well as to men with this condition.

Methods

Online databases were searched for articles investigating self-reported empathy among adult women with ASD. Only six studies comparing women to men were identified.

Results

All studies found women with an ASD to report lower levels of empathy than typically developed women, and typically developed men, but similar levels to men with this condition.

Conclusion

The self-reported empathic ability of women diagnosed with ASD resembles that of their male counterparts most closely; they show a hypermasculinisation in empathy. This is particularly surprising considering the large gender difference in empathy in the general population.

Discussion

One of the limitations of this review is that the current diagnostic criteria for ASD are oriented towards male-specific behaviour and fail to integrate gender specific characteristics. Hence, women diagnosed with ASD are likely to be at the male end of the continuum. The suggested hypermasculinisation of women on the spectrum, as evident from this review, may therefore be exaggerated due to a selection bias.     

Post-fire recovery of Mediterranean ground ant communities follows vegetation and dryness gradients

Aim In the Mediterranean Basin, the main forest communities vary in their ability to recover after fire. In this study we analyse the effects of fire on ant communities occurring in various vegetation types distributed along a geographical gradient in the western Mediterranean region. Location The study was carried out in burned and unburned habitats of 22 sites corresponding to eight vegetation types distributed along a gradient of dryness throughout Catalonia (north‐east Spain). Methods We placed five pairs of plots (one plot located in the burned area and the second one placed in the unburned margin) per site. We compared ant communities in these unburned and burned plot types 8 years after fire using pitfall traps. Traps were set out in mid‐May and mid‐July. We analysed the structure and composition of ant communities in the burned and unburned areas of these vegetation types using anova tests, correspondence analysis (CA) and linear regression. Results The resilience of ant communities varies with vegetation type. Ant communities in forests with high resilience also recover rapidly after fire, while those in forests that do not recover after fire show the lowest resilience. Species richness does not depend on burning or vegetation type. The resilience of these Mediterranean ant communities to fire is related to the environmental characteristics of the region where they live. Accordingly, differences between burned and unburned habitats are smaller for ant communities in areas with higher water deficit in summer than for those in moister ones. Main conclusions The structure and composition of ant communities after fire depends on the level of direct mortality caused by the fire. It affects ant species differently, as determined by the habitats used for nesting and foraging. The reestablishment of vegetation cover depends on forest composition before the fire. As vegetation cover determines resource and microhabitat availability and competitive relationships among species, forest composition before the fire also affects post‐fire recovery of ant communities to the medium‐term. Finally, ant communities living in drier areas recover more quickly after fire than those living in moister ones. This pattern might be because in areas with higher water deficit there are more species characteristic of open environments, which are habitats similar to those generated after fire.     

Binding of histamine to the H1 receptor—a molecular dynamics study

Binding of histamine to the G-protein coupled histamine H₁ receptor plays an important role in the context of allergic reactions; however, no crystal structure of the resulting complex is available yet. To deduce the histamine binding site, we performed unbiased molecular dynamics (MD) simulations on a microsecond time scale, which allowed to monitor one binding event, in which particularly the residues of the extracellular loop 2 were involved in the initial recognition process. The final histamine binding pose in the orthosteric pocket is characterized by interactions with Asp107^3.32, Tyr108^3.33, Thr194^5.43, Asn198^5.46, Trp428^6.48, Tyr431^6.51, Phe432^6.52, and Phe435^6.55, which is in agreement with existing mutational data. The conformational stability of the obtained complex structure was subsequently confirmed in 2 μs equilibrium MD simulations, and a metadynamics simulation proved that the detected binding site represents an energy minimum. A complementary investigation of a D107A mutant, which has experimentally been shown to abolish ligand binding, revealed that this exchange results in a significantly weaker interaction and enhanced ligand dynamics. This finding underlines the importance of the electrostatic interaction between the histamine ammonium group and the side chain of Asp107^3.32 for histamine binding.     

AM1* parameters for phosphorus,sulfur and chlorine

An extension of the AM1 semiempirical molecular orbital technique, AM1*, is introduced. AM1* uses AM1 parameters and theory unchanged for the elements H, C, N, O and F. The elements P, S and Cl have been reparameterized using an additional set of d orbitals in the basis set and with two-center core–core parameters, rather than the Gaussian functions used to modify the core–core potential in AM1. Voityuk and Röschs AM1(d) parameters have been adopted unchanged for AM1* with the exception that new core–core parameters are defined for Mo–P, Mo–S and Mo–Cl interactions. Thus, AM1* gives identical results to AM1 for compounds with only H, C, N, O, and F, AM1(d) for compounds containing Mo, H, C, N, O and F only, but differs for molybdenum compounds containing P, S or Cl. The performance and typical errors of AM1* are discussed.Electronic Supplementary Material Supplementary material is available in the online version of this article at . Tables 2 and 4–7 and a full list (Tables S1, S2) of geometrical parameters and barrier heights are given in the supplementary material.This revised version was published online in September 2003.     

Predicting the Recovery of <Emphasis Type="Italic">Pinus halepensis</Emphasis> and <Emphasis Type="Italic">Quercus ilex</Emphasis> Forests after a Large Wildfire in Northeastern Spain

Quercus ilex and Pinus halepensis are two of the most common tree species of the western Mediterranean basin. Both species regenerate reliably after fire: P. halepensis colonizes recently disturbed areas by effective seedling recruitment, while Q. ilex resprouts vigorously after disturbances. For this reason, the natural regeneration of these species after fire should ensure the re-establishment of a forest similar to that which existed before the fire. This study analyzes with a simple simulation model whether or not the relative abundance of monospecific and mixed forests of these species in the landscape is altered by fire. We also analyze the topographic factors and the forest structure before the fire that determine the changes in forest composition after fire. This study has been carried out in a large fire that occurred in NE Spain. Overall, 33% of plots changed to another community type, but this probability of change varied considerably among community types before the fire. Monospecific forests of P. halepensis or Q. ilex had a high probability of remaining in their original composition after the fire, whereas the resilience of mixed forests of these two species was quite low. Mixed forests changed for the most part to monospecific P. halepensis or Q. ilex forests. Analysis of several factors determining these changes indicated that only elevation as a significant topographical variable. The effect of fire was to increase the altitudinal differentiation between the two species. P. halepensis forests that changed to mixed or Q. ilex forests were those of highest elevation, while the mixed and Q. ilex plots that changed to P. halepensis forests were those located at the lowest elevations. Concerning structural variables before fire, density of Q. ilex trees before the fire showed a much greater effect than P. halepensis density in determining the post-fire community. Finally, burn severity also influenced the changes observed. For both P. halepensis and Q. ilex forests, plots that changed to another forest type were mainly those that burned more severely. In the case of mixed forests, even low fire severities involved high probabilities of change to monospecific forests.