Simulation of protein misfolding using a lattice model

The structure of the tightly bound complex of the globular myosin head with F-actin is the key to understanding important details of the mechanism of how the actin-myosin motor functions. The current notion on this complex is based on the docking of known atomic structures of constituent proteins into low-resolution electron-density maps. The atomic structure of the complex was refined by the molecular mechanics method, which consists in minimizing the energy of molecular interaction and which makes it possible to optimize not only the relative position of protein backbones as rigid bodies, but also the position of side chains on the protein interface. The structure calculated using ICM-Pro software, on the one hand, is close to the model obtained using electron microscopy; on the other hand, it ensures the best calculated interaction energy and accounts for the results of mutagenesis experiments. On the basis of the structure obtained, we can suggest the molecular mechanisms underlying the actin-activated release of ATP hydrolysis products from myosin and the decrease in the affinity of myosin for actin upon binding of nucleotides.     

Computer analysis of regulatory signals in complete bacterial genomes. Translation initiation of ribosomal protein operons]

Signals of translation initiation of operons of Haemophilus influenzae ribosomal proteins were predicted. This process is regulated by the formation of secondary RNA structures to which one of the proteins encoded in a particular operon binds. In some cases, these structures imitate the region of protein binding to rRNA. Predictions are made by comparing with homologous operons of Escherichia coli and analogous regions of rRNA and by estimating the energy of secondary structure formation. It is shown that this regulatory mechanism occurs: in operons L11, S10, S15, spc, and alpha of H.influenzae and, probably, in operon S15 of Helicobacter pylori, Bacillus subtilis, and Mycoplasma genitalium.     

The action of an enzymatically stable Leu-enkephalin analog on the prostanoid content in the myocardium under stress- and adrenaline-induced damage

The protective action of enzymatically stable analogue of Leu-enkephalin (D-ala-2-leu5-arg6), injected intraperitoneally, in the course of stress- and epinephrine induced myocardial damage was demonstrated in animal (129 white rats) experiments. Two effect of enkephalin were sufficient for the cardiac protection: enkephalin-stimulated prostacyclin biosynthesis and simultaneous inhibition of thromboxane production.     

Effect of vasopressin on changes in the behavioral reactions of rats induced by psychotropic substances

The effect was studied of arginyl-8-vasopressin (AVP) on changes in rats behavioural reactions, elicited by reserpine, haloperidol, aminazine, amitriptyline or nialamide. It has been shown that AVP administered intraperitoneally in a dose of 0.001 mg/kg, eliminates the deficit of elaboration of conditioned reaction of active avoidance produced by psychotropic drugs, without influencing the motor activity reduction developed after administration of these substances.     

Influence of opioid peptides on nerve tissue in vitro

The influence of opioid peptides (gamma- and beta-endorphins, leu- and met-enkephalins, as well as certain synthetic analogs of enkephalin) was investigated on organotypic cultures of rat spinal and sympathetic ganglia. The cellular composition and size of the zone of growth were evaluated on the basis of intravital observations and an analysis of the specimen obtained using the method of impregnation, according to Holmes and the detection of catecholamines with glyoxylic acid. It was established that under the action of all the investigated substances that possess high affinity for opiate receptors, growth of the neurites from an explant was enhanced, and the number of glial and fibroblastoid cells in the growth zone was increased. The effect was observed most distinctly on a model of sympathetic ganglia. The tested compounds exhibited a significant growth-stimulating effect in the range of concentrations 10^–8–10^–14 M. The maximum size of the growth zone of the explants of the sympathetic ganglia in the case of a mean effective concentration of the peptides 10^–10 M by the third to fifth day of culturing was approximately 2–2.5 times this value in the control. The reaction was similar to the response of the nerve cells to nerve growth factor, used as a standard. Thus, the opioid peptides exhibit a pronounced growth effect on the structures of the nerve tissue under conditions of culture. It is suggested that this group of compounds, together with its currently well-known functions, may play a definite role in processes of the development and regenera-of nerve tissue.Institute of Experimental Cardiology, All-Union Cardiologic Science Center, Academy of Medical Sciences of the USSR, Moscow. Translated from Neirofiziologiya, Vol. 17, No. 4, pp. 550–557, July–August, 1985.     

Geographical patterns in the population genetics of Atlantic salmon, Salmo salar L., on U.S.S.R. territory, as evidence for colonization routes

From data on interpopulation genetic structure of the Atlantic salmon from the rivers of the Barents, White and Baltic Sea basins on U.S.S.R. territory, it is suggested that salmon colonized the Onega and Pechora River basins from the Baltic drainage as the last ice-sheet receded, and that the Kola Peninsula rivers were colonized separately from the Barents Sea area.     

Method of ultrastructural analysis with the aid of measuring television complex]

The area of the section of presynaptic dense projections of the active zone of axondendritic synapses of the rat's cortex was measured using a television complex. Tissue specimens were contrasted with phosphotungstic acid. Morphometry was carried out in the regime of error correction in measurement, the errors arising in scanning process of image. The area of the section of mitochondria, lysosome, nucleoli, channels and tanks of the endoplasmic reticulum may be measured by the method suggested. Quantitative data, obtained by the morphometry of the synapse ultrastructure, may serve a basis for understanding the mechanism by which synapses are involved in information processes of the central nervous system.     

Genetic modification of the waxy character in barley under the action of exogenous DNA of the wild variety

Genetic transformation was studied on spring barley mutants carrying the recessive mutant allele of waxy locus.Analysis of the pollen grains of 38 control plants that were not subjected to any treatment showed that in the whole sample there was no mutant grain that stained black with iodine. It is also indicative of the genotypical purity of the original waxy plants.After mechanical damage (puncture in the top and in the side of a grain) there were 5 pollen grains fo wild type among 124000 mutant grains. Injection of grains with 2 μl distilled water led to the emergence of pollen grains that stained black at a frequency similar to that after puncture. The overall frequency of wild barley pollen grains for all control variants was 2.2·10⁻⁵.The frequencies of wild-type pollen grains were practically the same after injections of DNA from E. coli, extensively deproteinized highly polymeric DNA from barley leaves or slightly deproteinized low polymeric DNA from barley endospermal material.There was no marked increase of the wild pollen frequency after the injection of slightly deproteinized low polymeric DNA from the endospernal material (2.2·10⁻⁵ in the control versus 3.7·10⁻⁵ in the experiment).The analysis of the material for the amount of altered pollen grains in invidual plants also unequivocally demonstrated significant differences between the control and the experiment. In the first four variants there was no plant having over these altered pollen grains among the 2500 mutant grains examined. In the variants with injections of barley DNA differing in the extent of deproteinization and in polymerisation only in one case (of low polymeric slightly deproteinized DNA) there were no plants with many altered pollen grains. In all the other variants there were plants having much pollen of wild type.The largest number of plants with a great many affected pollen grains occurred in the variant with highly polymeric DNA from the endospermal material not subjected to deproteinization with chloroform and isoamyl alcohol.