A centralized model for creating shared,standardized, microsatellite data that simplifies inter-laboratory collaboration

We demonstrate an efficient model for standardizing microsatellite DNA data among laboratories studying Oncorhynchus mykiss. Eight laboratories standardized 13 microsatellite loci following allele nomenclature of a central laboratory (average inter-laboratory genotyping concordance >98%). Following this central model, we have currently standardized 298 alleles from throughout the species native range. Although we focus here on O. mykiss, our experiences and recommendation apply equally to other broadly distributed species that may benefit from multi-laboratory collaborative data collection.     

Failure to detect nephrotoxicity of chronically administered dimethyl sulfoxide (DMSO) in rats.

Male and female rats received daily intraperitoneal injections of dimethyl sulfoxide (DMSO; 2 or 4 g/kg) or saline for 28 days. At the end of that time, the ability of the animals' kidneys to transport p-aminohippurate (PAH) and N-methylnicotinamide (NMN) was tested in an in vitro system.Both doses of DMSO used produced measurable toxicity of a general nature: There was some mortality, and growth of the animals was retarded. However, DMSO had no detectable nephrotoxic action. Terminal serum urea and creatinine concentrations were normal in all treatment groups, and there was no effect of DMSO on the uptake of PAH or NMN by renal cortical slices. The data suggest that DMSO does not have an important specific toxic effect on the kidneys in this species.     

Differentially oriented populations of actin filaments generated in lamellipodia collaborate in pushing and pausing at the cell front

Eukaryotic cells advance in phases of protrusion, pause and withdrawal. Protrusion occurs in lamellipodia, which are composed of diagonal networks of actin filaments, and withdrawal terminates with the formation of actin bundles parallel to the cell edge. Using correlated live-cell imaging and electron microscopy, we have shown that actin filaments in protruding lamellipodia subtend angles from 15-90 degrees to the front, and that transitions from protrusion to pause are associated with a proportional increase in filaments oriented more parallel to the cell edge. Microspike bundles of actin filaments also showed a wide angular distribution and correspondingly variable bilateral polymerization rates along the cell front. We propose that the angular shift of filaments in lamellipodia serves in adapting to slower protrusion rates while maintaining the filament densities required for structural support; further, we suggest that single filaments and microspike bundles contribute to the construction of the lamella behind and to the formation of the cell edge when protrusion ceases. Our findings provide an explanation for the variable turnover dynamics of actin filaments in lamellipodia observed by fluorescence speckle microscopy and are inconsistent with a current model of lamellipodia structure that features actin filaments branching at 70 degrees in a dendritic array.     

Changes in public order after the opening of a medically supervised safer injecting facility for illicit injection drug users

Background

North America''s first medically supervised safer injecting facility for illicit injection drug users was opened in Vancouver on Sept. 22, 2003. Although similar facilities exist in a number of European cities and in Sydney, Australia, no standardized evaluations of their impact have been presented in the scientific literature.

Methods

Using a standardized prospective data collection protocol, we measured injection-related public order problems during the 6 weeks before and the 12 weeks after the opening of the safer injecting facility in Vancouver. We measured changes in the number of drug users injecting in public, publicly discarded syringes and injection-related litter. We used Poisson log-linear regression models to evaluate changes in these public order indicators while considering potential confounding variables such as police presence and rainfall.

Results

In stratified linear regression models, the 12-week period after the facility''s opening was independently associated with reductions in the number of drug users injecting in public (p < 0.001), publicly discarded syringes (p < 0.001) and injection-related litter (p < 0.001). The predicted mean daily number of drug users injecting in public was 4.3 (95% confidence interval [CI] 3.5–5.4) during the period before the facility''s opening and 2.4 (95% CI 1.9–3.0) after the opening; the corresponding predicted mean daily numbers of publicly discarded syringes were 11.5 (95% CI 10.0–13.2) and 5.4 (95% CI 4.7–6.2). Externally compiled statistics from the city of Vancouver on the number of syringes discarded in outdoor safe disposal boxes were consistent with our findings.

Interpretation

The opening of the safer injecting facility was independently associated with improvements in several measures of public order, including reduced public injection drug use and public syringe disposal.Many cities are experiencing epidemics of bloodborne diseases as a result of illicit injection drug use,^1,2,3 and drug overdoses have become a leading cause of death in many urban areas.^4,5,6 Public drug use also plagues many inner city neighbourhoods, and the unsafe disposal of syringes in these settings is a major community concern.^{7,8,9,10,11,12,13}In over 2 dozen European cities and, more recently, in Sydney, Australia, medically supervised safer injecting facilities, where injection drug users (IDUs) can inject previously obtained illicit drugs under the supervision of medical staff, have been established in an effort to reduce the community and public health impacts of illicit drug use.¹⁴ Inside these facilities IDUs are typically provided with sterile injecting equipment, emergency care in the event of overdose, as well as primary care services and referral to addiction treatment.^13,15 Although anecdotal reports have suggested that such sites may improve public order,¹² reduce the number of deaths from overdose¹⁶ and improve access to care,¹⁷ no standardized evaluations of their impact are available in the scientific literature.¹⁸On Sept. 22, 2003, health officials in Vancouver opened a government-sanctioned safer injecting facility as pilot project. The facility, the first in North America, is centrally located in Vancouver''s Downtown Eastside, which is the most impoverished urban neighbourhood in Canada and home to well-documented overdose and HIV epidemics among the estimated 5000 IDUs who reside there.^19,20 Federal approval for the 3-year project was granted on the condition that the health and social impacts of the facility be rigorously evaluated. Although evaluation of the facility''s impact on certain outcomes (e.g., HIV incidence) is ongoing and will take several years, it is now possible to examine the impacts of the site on public order. Therefore, we conducted this study to test the hypothesis that changes in improperly discarded syringes and public drug use would be observed after the opening of the safer injecting facility.     

Consortships and conceptions in captive rhesus macaques (Macaca mulatta)

A captive group of rhesus macaques (Macaca mulatta) was observed during the breeding season to determine if consortship behavior, rather than promiscuous matings, resulted in higher reproductive success for either partner. The 38 adult females in this group were observed “in consort” with the 5 adult or 4 subadult males on 179 occasions. Most of these consortships were short-term, lasting less than one day. Six females engaged in consortships with one male that spanned more than three days, but the majority of these long-term associations did not result in a pregnancy with that male. The term “consortship” has been traditionally accepted as a specific nonhuman primate mating pattern, but the exact nature of this behavioral pattern and its evolutionary importance have been less clearly understood. Consort behavior could be considered a precursor to a monogamous mating system if long-term exclusive sexual associations resulted in higher reproductive success for the participants. But this study demonstrates that for rhesus macaques, who exhibit both consort behavior and more promiscuous matings, there is no clear reproductive advantage to long-term consortships. In light of the inconsistent use of the term consortship, the possible adaptive significance of an exclusive male-female sexual association for the evolution of human mating patterns needs to be reevaluated.     

High molecular weight blue fluorescence protein from the bioluminescent bacterium Photobacterium fischeri.

A blue fluorescence protein has been purified from extracts of the bioluminescent bacterium Photobacterium fischeri and found to have a native molecular weight of 70,000, and to be a dimer of two identical subunits. SDS gel electrophoresis distinguishes the monomer from the two non-identical subunits of luciferase. The molecular weight for this blue fluorescence protein contrasts with the much lower value (22,000) reported for the same type of protein isolated from Photobacterium phosphoreum.