Male golden hamsters (<Emphasis Type="Italic">Mesocricetus auratus</Emphasis>) are more reactive than females to a visual predator cue

In most species of small mammals, males are exposed to higher levels of risk than females because they compete for mates, travel greater distances to find and procure mates, and/or defend a territory. This suggests that males and females might have different responses to risky situations, such as the presence of a predator. We tested responses to a visual predator cue (an owl silhouette) in male and female golden hamsters (Mesocricetus auratus). In a laboratory arena, there was no significant sex difference in the latency to enter the burrow or time spent in the burrow immediately after exposure to the owl silhouette. Males, however, were less likely to be active during the 3-min period following the animal’s exposure to the silhouette, indicating that male golden hamsters are more wary after exposure to an aerial predator cue than females. Most studies of responses to predators or predator cues have not considered sex differences, but our results show that males and females may have quite different responses to predator cues. Further work should be done to characterize and quantify sex differences in response to predators or predator cues.     

A centralized model for creating shared,standardized, microsatellite data that simplifies inter-laboratory collaboration

We demonstrate an efficient model for standardizing microsatellite DNA data among laboratories studying Oncorhynchus mykiss. Eight laboratories standardized 13 microsatellite loci following allele nomenclature of a central laboratory (average inter-laboratory genotyping concordance >98%). Following this central model, we have currently standardized 298 alleles from throughout the species native range. Although we focus here on O. mykiss, our experiences and recommendation apply equally to other broadly distributed species that may benefit from multi-laboratory collaborative data collection.     

The structure of sulfoindocarbocyanine 3 terminally attached to dsDNA via a long, flexible tether

Fluorescence resonance energy transfer (FRET) is an important source of long-range distance information in macromolecules. However, extracting maximum information requires knowledge of fluorophore, donor and acceptor, positions on the macromolecule. We previously determined the structure of the indocarbocyanine fluorophores Cy3 and Cy5 attached to DNA via three-carbon atom tethers, showing that they stacked onto the end of the helix in a manner similar to an additional basepair. Our recent FRET study has suggested that when they are attached via a longer 13-atom tether, these fluorophores are repositioned relative to the terminal basepair by a rotation of ～30°, while remaining stacked. In this study, we have used NMR to extend our structural understanding to the commonly used fluorophore sulfoindocarbocyanine-3 (sCy3) attached to the 5'-terminus of the double-helical DNA via a 13-atom flexible tether (L13). We find that L13-sCy3 remains predominantly stacked onto the end of the duplex, but adopts a significantly different conformation, from that of either Cy3 or Cy5 attached by 3-atom tethers, with the long axes of the fluorophore and the terminal basepair approximately parallel. This result is in close agreement with our FRET data, supporting the contention that FRET data can be used to provide orientational information.     

Identification of factors that function in Drosophila salivary gland cell death during development using proteomics

Proteasome inhibitors induce cell death and are used in cancer therapy, but little is known about the relationship between proteasome impairment and cell death under normal physiological conditions. Here, we investigate the relationship between proteasome function and larval salivary gland cell death during development in Drosophila. Drosophila larval salivary gland cells undergo synchronized programmed cell death requiring both caspases and autophagy (Atg) genes during development. Here, we show that ubiquitin proteasome system (UPS) function is reduced during normal salivary gland cell death, and that ectopic proteasome impairment in salivary gland cells leads to early DNA fragmentation and salivary gland condensation in vivo. Shotgun proteomic analyses of purified dying salivary glands identified the UPS as the top category of proteins enriched, suggesting a possible compensatory induction of these factors to maintain proteolysis during cell death. We compared the proteome following ectopic proteasome impairment to the proteome during developmental cell death in salivary gland cells. Proteins that were enriched in both populations of cells were screened for their function in salivary gland degradation using RNAi knockdown. We identified several factors, including trol, a novel gene CG11880, and the cop9 signalsome component cop9 signalsome 6, as required for Drosophila larval salivary gland degradation.     

Function and therapeutic potential of host defence peptides.

Cationic host defence (antimicrobial) peptides are an important component of the innate immune systems of a wide variety of plants, animals, and bacteria. Although most of these compounds have direct antimicrobial activities under specific conditions, a greater appreciation for the diversity of functions of these molecules is beginning to develop in the field. In addition to their directly antimicrobial activities, they also have a broad spectrum of activity on the host immune system, with both pro-inflammatory and anti-inflammatory effects being invoked. Increasingly sophisticated approaches to understand the role of host defence peptides in modulating innate immunity are already serving to guide the development of novel therapeutics.     

Specific detection of DNA and RNA targets using a novel isothermal nucleic acid amplification assay based on the formation of a three-way junction structure

The formation of DNA three-way junction (3WJ) structures has been utilised to develop a novel isothermal nucleic acid amplification assay (SMART) for the detection of specific DNA or RNA targets. The assay consists of two oligonucleotide probes that hybridise to a specific target sequence and, only then, to each other forming a 3WJ structure. One probe (template for the RNA signal) contains a non-functional single-stranded T7 RNA polymerase promoter sequence. This promoter sequence is made double-stranded (hence functional) by DNA polymerase, allowing T7 RNA polymerase to generate a target-dependent RNA signal which is measured by an enzyme-linked oligosorbent assay (ELOSA). The sequence of the RNA signal is always the same, regardless of the original target sequence. The SMART assay was successfully tested in model systems with several single-stranded synthetic targets, both DNA and RNA. The assay could also detect specific target sequences in both genomic DNA and total RNA from Escherichia coli. It was also possible to generate signal from E.coli samples without prior extraction of nucleic acid, showing that for some targets, sample purification may not be required. The assay is simple to perform and easily adaptable to different targets.     

Peri-partum posture and behaviour of gilts and the location of their piglets in lines selected for components of efficient lean growth

Peri-partum posture and behaviour of gilts from lines selected for different components of efficient lean growth were studied to determine if behavioural changes may have been associated with the observed responses in reproductive performance. The proportions of time that gilts expressed defined posture and behaviour traits and the locations of their piglets were determined from video recordings of observations made at 5min intervals in the period extending from 2h pre-farrowing to 2h post-farrowing. The 137 gilts studied were from four pairs of Large White lines which had been divergently (high and low) selected for either daily food intake (DFI), lean food conversion efficiency (LFC), lean growth rate on ad libitum feeding (LGA) or lean growth rate on a restricted feeding scale (LGS).Almost all the significant (P<05) changes occurred in the LGS pair of lines. In the pre-farrowing period, relative to the low LGS gilts, high LGS gilts spent a higher proportion of their time lying on their sides (0.92 versus 0.69), and less time in the upright postures of standing, sitting or lying on their bellies (0.08 versus 0.33) and engaging in nesting behaviour (0.02 versus 0.10). During farrowing, high LGS gilts again lay on their sides more often than low LGS gilts (0.96 versus 0.80) and were upright less often (0.04 versus 0.20). High LGS gilts changed posture less often than low LGS gilts (0.05 versus 0.31) but were more often alert (0.79 versus 0.61). During farrowing, high LGS piglets were seen less often at their mother's head, back and vulva or at the creep than low LGS piglets (0.06 versus 0.15). Post-farrowing, there were no significant differences between the lines, almost all gilts lying on their sides with their piglets at the udder. Divergent selection for components of efficient lean growth rate on ad libitum feeding was not associated with consistent responses in gilt posture and behaviour or in piglet location. Selection for high lean growth on restricted feeding had effects on gilt posture and behaviour which may have been beneficial to her welfare and that of her piglets.