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1.
Rasmussen AA Wegener-Feldbrügge S Porter SL Armitage JP Søgaard-Andersen L 《Molecular microbiology》2006,60(2):525-534
In prokaryotes, the principal signal transduction systems operating at the level of protein phosphorylation are the two-component systems. A number of hybrid histidine protein kinases in these systems contain several receiver domains, however, the function of these receiver domains is unknown. The RodK kinase in Myxococcus xanthus has an unconventional domain composition with a putative N-terminal sensor domain followed by a histidine kinase domain and three receiver domains. RodK is essential for the spatial coupling of the two morphogenetic events underlying fruiting body formation in M. xanthus, aggregation of cells into nascent fruiting bodies and the subsequent sporulation of these cells. RodK kinase activity is indispensable for RodK activity. By systematically substituting the conserved, phosphorylatable aspartate residues in the three receiver domains, genetic evidence is provided that each receiver domain is important for RodK function and that each receiver domain has a distinct function, which depends on phosphorylation. Biochemical analyses provided indirect evidence for phosphotransfer from the RodK kinase domain to the third receiver domain. This is the first example of a hybrid histidine protein kinase in which four signalling domains have been shown to be required for full activity. 相似文献
2.
Rye Jin KIM Seung Han OH Mi Young NOH Yong Hun JO Seongon KIM In Seok BANG Yong Seok LEE Iksoo KIM Yeon Soo HAN 《Entomological Research》2010,40(4):217-224
Calreticulin (CRT) plays pivotal roles in Ca2+ homeostasis, molecular chaperoning, infection, inflammation and innate immunity. In an attempt to study the involvement of CRT in innate immunity, the full-length cDNA of calreticulin (PxCRT) was cloned from the diamondback moth, Plutella xylostella. It consists of 1674 bp (excluding poly-A tail) with a longest open reading frame (ORF) of 1197 bp encoding 398 amino acids. In silico analysis of PxCRT ORF reveals that it has various repeat motifs and endoplasmic reticulum retention signal found in all the calreticulin proteins. As expected, high amino acid sequence identities were found from other CRTs identified from Bombyx mori (87%), Galleria mellonella (87%), Apis mellifera (74%), Anopheles gambiae (74%), Tribolium castaneum (73%), Culex quinquefasciatus (73%), Rhodnius prolixus (72%), Nasonia vitripennis (71%), Drosophila melanogaster (71%) and Haemaphysalis qinghaiensis (68%). During development, P. xylostella expressed PxCRT predominantly in the pupal stage. In addition, spatial expression pattern analysis indicates that PxCRT was highly expressed in the silk gland. PxCRT mRNA, furthermore, was strongly induced 3 to 6 h after laminarin treatment, suggesting that PxCRT appears to be involved in immune responses and also plays an important role in the silk gland. 相似文献
3.
We evaluated how changes in nutrient supply altered the composition of epiphytic and benthic microalgal communities in a Thalassia testudinum (turtle grass) bed in Florida Bay. We established study plots at four sites in the bay and added nitrogen (N) and phosphorus
(P) to the sediments in a factorial design. After 18, 24, and 30 months of fertilization we measured the pigment concentrations
in the epiphytic and benthic microalgal assemblages using high performance liquid chromatography. Overall, the epiphytic assemblage
was P-limited in the eastern portion of the bay, but each phototrophic group displayed unique spatial and temporal responses
to N and P addition. Epiphytic chlorophyll a, an indicator of total microalgal load, and epiphytic fucoxanthin, an indicator of diatoms, increased in response to P addition
at one eastern bay site, decreased at another eastern bay site, and were not affected by P or N addition at two western bay
sites. Epiphytic zeaxanthin, an indicator of the cyanobacterial/coralline red algae complex, and epiphytic chlorophyll b, an indicator of green algae, generally increased in response to P addition at both eastern bay sites but did not respond
to P or N addition in the western bay. Benthic chlorophyll a, chlorophyll b, fucoxanthin, and zeaxanthin showed complex responses to N and P addition in the eastern bay, suggesting that the benthic
assemblage is limited by both N and P. Benthic assemblages in the western bay were variable over time and displayed few responses
to N or P addition. The contrasting nutrient limitation patterns between the epiphytic and benthic communities in the eastern
bay suggest that altering nutrient input to the bay, as might occur during Everglades restoration, can shift microalgal community
structure, which may subsequently alter food web support for upper trophic levels. 相似文献
4.
Paul A. Hamblin Bruce A. Maguire Ruslan N. Grishanin & Judith P. Armitage 《Molecular microbiology》1997,26(5):1083-1096
In contrast to enteric bacteria, chemotaxis in Rhodobacter sphaeroides requires transport and partial metabolism of chemoattractants. Although a chemotaxis operon has been identified containing homologues of the enteric cheA, cheW, cheR genes and two homologues of the cheY gene, deletion of the entire chemotaxis operon had only minor effects on chemotactic behaviour under the conditions tested. Responses to sugars were enhanced in tethered cells but in all other chemotaxis assays behaviour of the operon deletion mutant was wild type. The mutant also showed wild-type responses to weak organic acids such as acetate and propionate, the dominant chemoattractants for this organism, under all conditions. This is in direct contrast to the enterics in which CheA, CheW and CheY are absolutely essential for taxis to PTS sugars, oxygen and MCP-dependent chemoeffectors. The operon deletion mutant was subjected to Tn5 transposon mutagenesis and new mutants selected using a chemotaxis and phototaxis screen. One mutant, JPA203, was non-chemotactic on swarm plates and showed inverted responses when tethered or subjected to changes in light intensity. Characterization of the Tn5 insertion in JPA203 identified a second chemotaxis operon in R. sphaeroides that contains homologues of cheY, cheA and cheR, the first homologue of cheB and two homologues of cheW. The new genes were labelled orf10, cheYIII, cheAII, cheWII, cheWIII, cheRII, cheB and tlpC. When introduced into a wild-type background, deletion of cheAII produced a chemotaxis minus phenotype in R. sphaeroides, suggesting that cheAII forms part of a dominant chemotactic pathway, whereas the earlier identified operon plays only a minor role under laboratory conditions. The data presented here support the existence of two chemosensory pathways in R. sphaeroides, a feature that so far is unique in bacterial chemotaxis. 相似文献
5.
Mark AJ Roberts Elias August Abdullah Hamadeh Philip K Maini Patrick E McSharry Judith P Armitage Antonis Papachristodoulou 《BMC systems biology》2009,3(1):105-14
Background
Developing methods for understanding the connectivity of signalling pathways is a major challenge in biological research. For this purpose, mathematical models are routinely developed based on experimental observations, which also allow the prediction of the system behaviour under different experimental conditions. Often, however, the same experimental data can be represented by several competing network models. 相似文献6.
Patrick D. Armitage 《Hydrobiologia》1978,58(2):145-156
Changes in composition, numbers and biomass of benthic fauna of the Tees below Cow Green Reservoir and an unregulated tributary Maize Beck were followed between 1972 and 1975 and pre- and post-impoundment conditions were compared. Species diversity was lowest just below the dam and numbers and biomass were highest 240 m downstream of the dam. Faunal densities increased in the Tees after impoundment but in Maize Back no major changes were observed.Freshwater Biological Association, Cow Green UnitFreshwater Biological Association, Cow Green Unit 相似文献
7.
Does sociality drive the evolution of communicative complexity? A comparative test with ground-dwelling sciurid alarm calls 总被引:1,自引:0,他引:1
While sociality has been hypothesized to drive the evolution of communicative complexity, the relationship remains to be formally tested. We derive a continuous measure of social complexity from demographic data and use this variable to explain variation in alarm repertoire size in ground-dwelling sciurid rodents (marmots, Marmota spp.; prairie dogs, Cynomys spp.; and ground squirrels, Spermophilus spp.). About 40% of the variation in alarm call repertoire size was explained by social complexity in the raw data set. To determine the degree to which this relationship may have been influenced by historical relationships between species, we used five different phylogenetic hypotheses to calculate phylogenetically independent contrasts. Less variation was significantly explained in contrast-based analyses, but a general positive relationship remained. Social complexity explained more variation in alarm call repertoire size in marmots, while sociality explained no variation in repertoire size in prairie dogs and no variation in phylogenetically based analyses of squirrels. In most cases, substantial variation remained unexplained by social complexity. We acknowledge that factors other than social complexity, per se, may contribute to the evolution of alarm call repertoire size in sciurid rodents, and we discuss alternative hypotheses. Our measure of social complexity could be used by other researchers to test explicit evolutionary hypotheses that involve social complexity. 相似文献
8.
m-Fluorotyrosine substitution in beta-galactosidase; evidence for the existence of a catalytically active tyrosine 总被引:1,自引:0,他引:1
M Ring I M Armitage R E Huber 《Biochemical and biophysical research communications》1985,131(2):675-680
The pH profiles of beta-galactosidase, having tyr replaced by m-fluorotyrosine, were compared to those of normal enzyme. The inflection point on the alkaline side was lowered about 1.5 pH units in the fluoro-enzyme, corresponding to the difference in the phenolic pKa values of m-fluorotyrosine and tyr. When glycosidic bond breakage was rate-limiting, the Vm at pH 7.0 was higher for the fluoro-enzyme. When hydrolysis was rate-limiting or when acceptors which made transgalactosylis rate-limiting were used, the Vm was lower for the fluoro-enzyme. This shows that a tyr in beta-galactosidase is a general-acid catalyst in the glycosidic bond breaking reaction and a tyr (probably the same one) is a general-base catalyst in the hydrolytic reaction. 相似文献
9.
Brown MT Steel BC Silvestrin C Wilkinson DA Delalez NJ Lumb CN Obara B Armitage JP Berry RM 《Journal of bacteriology》2012,194(13):3495-3501
Swimming Escherichia coli cells are propelled by the rotary motion of their flagellar filaments. In the normal swimming pattern, filaments positioned randomly over the cell form a bundle at the posterior pole. It has long been assumed that the hook functions as a universal joint, transmitting rotation on the motor axis through up to ~90° to the filament in the bundle. Structural models of the hook have revealed how its flexibility is expected to arise from dynamic changes in the distance between monomers in the helical lattice. In particular, each of the 11 protofilaments that comprise the hook is predicted to cycle between short and long forms, corresponding to the inside and outside of the curved hook, once each revolution of the motor when the hook is acting as a universal joint. To test this, we genetically modified the hook so that it could be stiffened by binding streptavidin to biotinylated monomers, impeding their motion relative to each other. We found that impeding the action of the universal joint resulted in atypical swimming behavior as a consequence of disrupted bundle formation, in agreement with the universal joint model. 相似文献
10.
Rachel Stubbington Adam M. Greenwood Paul J. Wood Patrick D. Armitage John Gunn Anne L. Robertson 《Hydrobiologia》2009,630(1):299-312
The headwaters of karst rivers experience considerable hydrological variability, including spates and streambed drying. Extreme
summer flooding on the River Lathkill (Derbyshire, UK) provided the opportunity to examine the invertebrate community response
to unseasonal spate flows, flow recession and, at temporary sites, streambed drying. Invertebrates were sampled at sites with
differing flow permanence regimes during and after the spates. Following streambed drying at temporary sites, dewatered surface
sediments were investigated as a refugium for aquatic invertebrates. Experimental rehydration of these dewatered sediments
was conducted to promote development of desiccation-tolerant life stages. At perennial sites, spate flows reduced invertebrate
abundance and diversity, whilst at temporary sites, flow reactivation facilitated rapid colonisation of the surface channel
by a limited number of invertebrate taxa. Following streambed drying, 38 taxa were recorded from the dewatered and rehydrated
sediments, with Oligochaeta being the most abundant taxon and Chironomidae (Diptera) the most diverse. Experimental rehydration
of dewatered sediments revealed the presence of additional taxa, including Stenophylax sp. (Trichoptera: Limnephilidae) and Nemoura sp. (Plecoptera: Nemouridae). The influence of flow permanence on invertebrate community composition was apparent despite
the aseasonal high-magnitude flood events. Flow permanence was also critical in determining the community response to the
spate flows. Following streambed drying at temporary sites, the surficial sediments overlying the karstic bedrock functioned
as an effective refugium for several taxa. The development of aquatic insects following experimental rehydration indicated
that these taxa survived in dewatered sediments as desiccation-resistant eggs.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.
Handling editor: Sonja Stendera 相似文献