Nitrification rates in the lower river Rhine as a monitor for ecological recovery

The rate of in situ nitrification was tested as an indicator of the toxicological quality of the river Rhine. Concentration changes of ammonium ions over 85 to 133 km long reaches of three river branches downstream of the densely populated Ruhr-area (F.R.G.) were calculated from a data base for the period 1972 to 1986. Concentrations of ammonium in the river exceeded values of 1 mg N/l in winter. Because of the very high input of ammonium, bacterial nitrification dominated over other nitrogen processes. Relative rates of nitrification in the three river branches were proportional to the water temperature for the individual years. Nitrification rates in the river increased by a factor of ca. 4 during the period of 1972 to 1986. Toxic substances, whose concentrations decreased in the same period of time, were proposed as inhibitors of in situ nitrification rather than e.g. a low oxygen saturation of the water. The improvement of the conditions in the river, indicated by the in situ rate of nitrification, was also documented by data on macrofauna and fish populations.     

Biological nitrogen removal with nitrification and denitrification via nitrite pathway

Presently, the wastewater treatment practices can be significantly improved through the introduction of new microbial treatment technologies. To meet increasingly stringent discharge standards, new applications and control strategies for the sustainable removal of ammonium from wastewater have to be implemented. Partial nitrification to nitrite was reported to be technically feasible and economically favorable, especially when wastewater with high ammonium concentrations or low C/N ratios is treated. For successful implementation of the technology, the critical point is how to maintain partial nitrification of ammonium to nitrite. Partial nitrification can be obtained by selectively inhibiting nitrite oxidizing bacteria through appropriate regulation of the system’s DO concentration, microbial SRT, pH, temperature, substrate concentration and load, operational and aeration pattern, and inhibitor. The review addressed the microbiology, its consequences for their application, the current status regarding application, and the future developments.     

Impact of hydrology on the chemistry and phytoplankton development in floodplain lakes along the Lower Rhine and Meuse

The impact of hydrology (floods, seepage) on the chemistry of water and sediment in floodplain lakes was studied by a multivariate analysis (PCA) of physico-chemical parameters in 100 lakes within the floodplains in the lower reaches of the rivers Rhine and Meuse. In addition, seasonal fluctuations in water chemistry and chlorophyll-a development in the main channel of the Lower Rhine and five floodplain lakes along a flooding gradient were monitored. The species composition of the summer phytoplankton in these lakes was studied as well.At present very high levels of chloride, sodium, sulphate, phosphate and nitrate are found in the main channels of the rivers Rhine and Meuse, resulting from industrial, agricultural and domestic sewage. Together with the actual concentrations of major ions and nutrients in the main channel, the annual flood duration determines the physico-chemistry of the floodplain lakes. The river water influences the water chemistry of these lakes not only via inundations, but also via seepage. A comparison of recent and historical chemical data shows an increase over the years in the levels of chloride both in the main channel of the Lower Rhine and in seepage lakes along this river. Levels of alkalinity in floodplain lakes showed an inverse relationship with annual flood duration, because sulphur retention and alkalinization occurred in seepage waters and rarely-flooded lakes. The input of large quantities of nutrients (N, P) from the main channel has resulted, especially in frequently flooded lakes, in an increase in algal biomass and a shift in phytoplankton composition from a diatom dominated community towards a community dominated by chlorophytes and cyanobacteria.     

Novel microbial nitrogen removal processes

The present-day wastewater treatment practices can be significantly improved through the introduction of new microbial treatment technologies. Recently, several new processes for nitrogen removal have been developed. These new nitrogen removal technologies provide practicable options for treating nitrogen-laden wastewaters. The new processes are based on partial nitrification of ammonium to nitrite combined with anaerobic ammonium oxidation. These processes include the single reactor system for high ammonia removal over nitrite (SHARON) process, which involves part conversion of ammonium to nitrite; the anaerobic ammonium oxidation (ANAMMOX) process, which involves anaerobic ammonium oxidation; and the completely autographic nitrogen removal over nitrite (CANON) process, which involves nitrogen removal within one reactor under oxygen-limited conditions. These new processes target the removal of nitrogen from wastewaters containing significant quantities of ammonium.     

Identification of novel small molecule enhancers of protein production by cultured mammalian cells

Shortcut nitrogen removal, that is, removal via formation and reduction of nitrite rather than nitrate, has been observed in membrane-aerated biofilms (MABs), but the extent, the controlling factors, and the kinetics of nitrite formation in MABs are poorly understood. We used a special MAB reactor to systematically study the effects of the dissolved oxygen (DO) concentration at the membrane surface, which is the biofilm base, on nitrification rates, extent of shortcut nitrification, and microbial community structure. The focus was on anoxic bulk liquids, which is typical in MAB used for total nitrogen (TN) removal, although aerobic bulk liquids were also studied. Nitrifying MABs were grown on a hollow-fiber membrane exposed to 3 mg N/L ammonium. The MAB intra-membrane air pressure was varied to achieve different DO concentrations at the biofilm base, and the bulk liquid was anoxic or with 2 g m(-3) DO. With 2.2 and 3.5 g m(-3) DO at the biofilm base, and with an anoxic bulk-liquid, the ammonium fluxes were 0.75 and 1.0 g N m(-2) day(-1), respectively, and nitrite was the main oxidized nitrogen product. However, with membrane DO of 5.5 g m(-3), and either zero or 2 g m(-3) DO in the bulk, the ammonium flux was around 1.3 g N m(-2) day(-1), and nitrate flux increased significantly. For all experiments, the cell density of ammonium oxidizing bacteria (AOB) was relatively uniform throughout the biofilm, but the density of nitrite oxidizing bacteria (NOB) decreased with decreasing biofilm DO. Among NOB, Nitrobacter spp. were dominant in biofilm regions with 2 g m(-3) DO or greater, while Nitrospira spp. were dominant in regions with less than 2 g m(-3) DO. A biofilm model, including AOB, Nitrobacter spp., and Nitrospira spp., was developed and calibrated with the experimental results. The model predicted the greatest extent of nitrite formation (95%) and the lowest ammonium oxidation flux (0.91 g N m(-2) day(-1)) when the membrane DO was 2 g m(-3) and the bulk liquid was anoxic. Conversely, the model predicted the lowest extent of nitrite formation (40%) and the highest ammonium oxidation flux (1.5 g N m(-2) day(-1)) when the membrane-DO and bulk-DO were 8 g m(-3) and 2 g m(-3), respectively. The estimated kinetic parameters for Nitrospira spp., revealed a high affinity for nitrite and oxygen. This explains the dominance of Nitrospira spp. over Nitrobacter spp. in regions with low nitrite and oxygen concentrations. Our results suggest that shortcut nitrification can effectively be controlled by manipulating the DO at the membrane surface. A tradeoff is made between increased nitrite accumulation at lower DO, and higher nitrification rates at higher DO.     

Effects of phytoplankton on the elemental composition (C,N, P) of suspended particulate material in the lower river Rhine

The spatial and temporal distribution of element concentrations were monitored together with chlorophyll a as an indicator of algal density to assess the effect of phytoplankton on the elemental composition (C, N, P) of suspended materials in the lower Rhine. The high concentrations of particulate C, N and P in the river were found to decrease in the delta and to increase again in the estuarine turbidity zone. Phytoplankton blooms increased the concentrations of particulate C, N, and P significantly in the upstream part of the river. In summer 1989, 15–65% of the particulate C and 20–75% of the particulate N were attributable to phytoplankton. Together with published data these observations indicate that in eutrophic rivers, the input of organic materials from the catchment is strongly modified and supplemented by in situ growth of phytoplankton. During seaward transport the phytoplankton and the particulate elements disappeared from the river water concomitantly with the suspended matter, indicating an increased retention of these elements due to sedimentation. In contrast, soluble ammonia, nitrite and phosphate increased in the tidal reaches of the river because of local input in the harbour and city of Rotterdam and because of mineralization. Therefore the total nutrient load of the Rhine estimated at the German/Dutch border does not reflect the actual input into the sea.     

Inhibition of bacterial and phytoplanktonic metabolic activity in the lower River Rhine by ditallowdimethylammonium chloride.

The effects of a quaternary ammonium compound, ditallowdimethylammonium chloride (DTDMAC), on natural populations of bacteria and phytoplankton from the lower River Rhine were examined to estimate their sensitivity to the discharges of cationic surfactants in the river basin. In short-term experiments, significant decreases in the growth rate of bacterioplankton and in the photosynthetic rate of phytoplankton were observed at a nominal concentration of 0.03 to 0.1 mg of DTDMAC liter-1. Nitrification was measured with an ion-selective electrode and by the rate of acid production in ammonium-spiked river water and was found to be only sensitive to the addition of concentrations higher than 1 mg of DTDMAC liter-1. This does not support an earlier suggestion that ammonium-oxidizing bacteria are specifically sensitive to quaternary ammonium compounds. The effect of DTDMAC on thymidine incorporation was shown to depend strongly on the concentration of suspended material, which varied with the sampling date. This effect was also quantified in experimental manipulations with Rhine water. Calculations on the partitioning of DTDMAC between water and suspended matter confirmed the role of suspended solids and showed that an increase of the dissolved DTDMAC concentration in Rhine water by circa 0.01 mg liter-1 leads to a slight inhibition of the growth of heterotrophic bacteria. It is concluded that a total concentration of circa 0.01 mg of DTDMAC liter-1 measured in the River Rhine is likely to have biological consequences.     

Inhibition of bacterial and phytoplanktonic metabolic activity in the lower River Rhine by ditallowdimethylammonium chloride.

The effects of a quaternary ammonium compound, ditallowdimethylammonium chloride (DTDMAC), on natural populations of bacteria and phytoplankton from the lower River Rhine were examined to estimate their sensitivity to the discharges of cationic surfactants in the river basin. In short-term experiments, significant decreases in the growth rate of bacterioplankton and in the photosynthetic rate of phytoplankton were observed at a nominal concentration of 0.03 to 0.1 mg of DTDMAC liter-1. Nitrification was measured with an ion-selective electrode and by the rate of acid production in ammonium-spiked river water and was found to be only sensitive to the addition of concentrations higher than 1 mg of DTDMAC liter-1. This does not support an earlier suggestion that ammonium-oxidizing bacteria are specifically sensitive to quaternary ammonium compounds. The effect of DTDMAC on thymidine incorporation was shown to depend strongly on the concentration of suspended material, which varied with the sampling date. This effect was also quantified in experimental manipulations with Rhine water. Calculations on the partitioning of DTDMAC between water and suspended matter confirmed the role of suspended solids and showed that an increase of the dissolved DTDMAC concentration in Rhine water by circa 0.01 mg liter-1 leads to a slight inhibition of the growth of heterotrophic bacteria. It is concluded that a total concentration of circa 0.01 mg of DTDMAC liter-1 measured in the River Rhine is likely to have biological consequences.     

Nitrite effect on ammonium and nitrite oxidizing processes in a nitrifying sludge

Nitrite accumulation can be undesirable in nitrifying reactors used for the biological elimination of nitrogen from wastewaters because the ammonium oxidation process was seen to be inhibited. There is a need to better understand the effects of nitrite on both ammonium and nitrite oxidizing processes. In this paper, the effect of nitrite on the nitrifying activity of a sludge produced in steady-state nitrification was evaluated in batch cultures. At 25 mg N/l of added nitrite, nitrification was successfully carried out. Addition of higher nitrite concentrations to nitrifying cultures (100 and 200 mg N/l) provoked inhibitory effects on the nitrification respiratory process. Nitrite at 100 and 200 mg N/l induced a significant decrease in the values for nitrate yield (−20% and −34%, respectively) and specific rate of nitrate formation (−26% and −67%, respectively), while the ammonium consumption efficiency kept high and the specific rate of ammonium oxidation did not significantly change. This showed that the nitrite oxidizing process was more sensitive to the presence of nitrite than the ammonium oxidizing process. These results showed that as a consequence of nitrite accumulation in nitrification systems, the activity of the nitrite oxidizing bacteria could be more inhibited than that of the ammonium oxidizing bacteria, provoking a higher accumulation of nitrite in the medium.     

湖泊氮素氧化及脱氮过程研究进展

自然界中氮的生物地球化学循环主要由微生物驱动,由固氮作用、硝化作用、反硝化作用和氨化作用来完成。过去数十年间,随着异养硝化、厌氧氨氧化和古菌氨氧化作用的发现,人们对环境中氮素循环认识逐步深入,提出了多种脱氮途径新假说。对湖泊生态系统中氮素的输入、输出及其在水体、沉积物和水土界面的迁移转化过程进行了概括,对湖泊生态系统中反硝化和厌氧氨氧化脱氮机理及脱氮效率的最新研究进展进行了探讨,并对以后的氮素循环研究进行了展望。     

Microbial catabolic activities are naturally selected by metabolic energy harvest rate

The fundamental trade-off between yield and rate of energy harvest per unit of substrate has been largely discussed as a main characteristic for microbial established cooperation or competition. In this study, this point is addressed by developing a generalized model that simulates competition between existing and not experimentally reported microbial catabolic activities defined only based on well-known biochemical pathways. No specific microbial physiological adaptations are considered, growth yield is calculated coupled to catabolism energetics and a common maximum biomass-specific catabolism rate (expressed as electron transfer rate) is assumed for all microbial groups. Under this approach, successful microbial metabolisms are predicted in line with experimental observations under the hypothesis of maximum energy harvest rate. Two microbial ecosystems, typically found in wastewater treatment plants, are simulated, namely: (i) the anaerobic fermentation of glucose and (ii) the oxidation and reduction of nitrogen under aerobic autotrophic (nitrification) and anoxic heterotrophic and autotrophic (denitrification) conditions. The experimentally observed cross feeding in glucose fermentation, through multiple intermediate fermentation pathways, towards ultimately methane and carbon dioxide is predicted. Analogously, two-stage nitrification (by ammonium and nitrite oxidizers) is predicted as prevailing over nitrification in one stage. Conversely, denitrification is predicted in one stage (by denitrifiers) as well as anammox (anaerobic ammonium oxidation). The model results suggest that these observations are a direct consequence of the different energy yields per electron transferred at the different steps of the pathways. Overall, our results theoretically support the hypothesis that successful microbial catabolic activities are selected by an overall maximum energy harvest rate.     

Assessment of Nitrification Potential in Ground Water Using Short Term, Single-Well Injection Experiments

Nitrification was measured within a sand and gravel aquifer on Cape Cod, MA, using a series of single-well injection tests. The aquifer contained a wastewater-derived contaminant plume, the core of which was anoxic and contained ammonium. The study was conducted near the downgradient end of the ammonium zone, which was characterized by inversely trending vertical gradients of oxygen (270 to 0 μM) and ammonium (19 to 625 μM) and appeared to be a potentially active zone for nitrification. The tests were conducted by injecting a tracer solution (ambient ground water + added constituents) into selected locations within the gradients using multilevel samplers. After injection, the tracers moved by natural ground water flow and were sampled with time from the injection port. Rates of nitrification were determined from changes in nitrate and nitrite concentration relative to bromide. Initial tests were conducted with ¹⁵N-enriched ammonium; subsequent tests examined the effect of adding ammonium, nitrite, or oxygen above background concentrations and of adding difluoromethane, a nitrification inhibitor. In situ net nitrate production exceeded net nitrite production by 3- to 6- fold and production rates of both decreased in the presence of difluoromethane. Nitrification rates were 0.02–0.28 μmol (L aquifer)⁻¹ h⁻¹ with in situ oxygen concentrations and up to 0.81 μmol (L aquifer)⁻¹ h⁻¹ with non-limiting substrate concentrations. Geochemical considerations indicate that the rates derived from single-well injection tests yielded overestimates of in situ rates, possibly because the injections promoted small-scale mixing within a transport-limited reaction zone. Nonetheless, these tests were useful for characterizing ground water nitrification in situ and for comparing potential rates of activity when the tracer cloud included non-limiting ammonium and oxygen concentrations.     

Bacterial community responses to increasing ammonia concentrations in model recirculating vertical flow saline biofilters

This study represents the first analysis of ammonia removal and bacterial communities in gravel biofilters treating saline wastewater and is of relevance to the growing inland marine aquaculture industry. As part of a study to gain greater understanding of the microbial processes occurring in a newly constructed limestone gravel wetland at a commercial marine fish farm, this study was designed to establish the ammonia removal capacity of model biofilters treating saline aquaculture wastewater and to investigate changes to total bacterial communities and ammonia-oxidizing bacterial communities as the biofilters are exposed to increasing ammonia concentrations. Three replicate laboratory-scale gravel biofilters were constructed and the limits of nitrification capacity were tested by dosing with aquaculture wastewater supplemented with increasing amounts of ammonium chloride. The experiment was run over a 12-week period with the water temperature between 24.5 and 28 °C and salinity between 28 and 38 ppt. Greater than 97% ammonia removal in each weekly treatment period was observed with ammonia concentrations of up to 600 ppm. At higher concentrations of ammonia, a lower percentage of ammonia was removed, and on occasion nitrite accumulation was observed. A drop in the number of operational taxonomic units (OTUs) detected in the bacterial community as measured by 16s rRNA T-RFLP was observed concurrent with the decrease in percentage ammonia removal. T-RFLP of the amoA gene showed the experimental biofilters to be dominated by three different OTUs of ammonia-oxidizing bacteria. A synchronous successional pattern among these three ammonia oxidizers was observed. The three OTUs were identified as belonging to three different nitrosomonad clusters. This study demonstrates that the vertical flow gravel biofilters have the ability to treat saline aquaculture wastewater that has a high ammonia concentration and that the microbial community within saline biofilters has the capacity to adapt to changing ammonia levels while maintaining nitrification activity.     

曝气充氧条件下污染河道氨挥发特性模拟

以污染河道为研究对象,模拟研究污染河道在曝气充氧(底泥曝气,ES组;水曝气,EW组)条件下氨挥发的特性,探讨主要影响因素及其作用过程.研究表明,污染河道水体具有一定氨挥发潜力,在实验室模拟条件下,氨挥发速率平均为2.51mg·m-2·h-1,相当于0.50 kgN· hm-2·d-1;曝气污染河道水体的氨挥发有一定的促进作用,与对照相比(EC组)氨挥发速率和累积氨挥发量存在显著差异(P＜ 0.05);不同曝气方式对氨挥发过程影响不同,氨挥发速率存在显著差异(P＜0.05);至实验结束,EW组的累积挥发量为2809.76 mg/m2,分别是ES组和EC组的1.17和2.25倍;各实验组的氨挥发累积量用一级动力学方程能很好地拟合,根据模型可以预测氨挥发量;同一温度条件下,pH值、铵氮浓度和通气频率是影响氨挥发的主要因素;曝气可以通过增加通气频率和提高水体pH值来促进氨挥发进行;在曝气作用下随着硝化过程的进行对氨挥发有一定的限制作用;曝气条件下,氨挥发作用在硝化过程启动阶段最为明显.     

Influence of dissolved oxygen concentration on nitrite accumulation in a biofilm airlift suspension reactor

The biofilm airlift suspension (BAS) reactor can treat wastewater at a high volumetric loading rate combined with a low sludge loading. Two BAS reactors were operated, with an ammonium load of 5 kg N/(m(3) d), in order to study the influence of biomass and oxygen concentration on the nitrification process. After start-up the nitrifying biomass in the reactors gradually increased up to 30 g VSS/L. Due to this increased biomass concentration the gas-liquid mass transfer coefficient was negatively influenced. The resulting gradual decrease in dissolved oxygen concentration (over a 2-month period) was associated with a concomitantly nitrite build-up. Short term experiments showed a similar relation between dissolved oxygen concentration (DO) and nitrite accumulation. It was possible to obtain full ammonium conversion with approximately 50% nitrate and 50% nitrite in the effluent. The facts that (i) nitrite build up occurred only when DO dropped, (ii) the nitrite formation was stable over long periods, and (iii) fully depending on DO levels in short term experiments, led to the conclusion that it was not affected by microbial adaptations but associated with intrinsic characteristics of the microbial growth system. A simple biofilm model based on the often reported difference of oxygen affinity between ammonium and nitrite oxydizers was capable of adequately describing the phenomena.Measurements of biomass density and concentration are critical for the interpretation of the results, but highly sensitive to sampling procedures. Therefore we have developed an independent method, based on the residence time of Dextran Blue, to check the experimental methods. There was a good agreement between procedures.The relation between biomass concentration, oxygen mass transfer rate and nitrification in a BAS reactor is discussed. (c) 1997 John Wiley & Sons, Inc.     

Dynamics of Nutrient Contents (Phosphorus,Nitrogen) in Water,Sediment and Plants After Restoration of Connectivity in Side‐Channels of the River Rhine

During the last century, canalization of the Rhine river led to disconnection of side‐arms, over‐sedimentation of these channels, loss of the fluvial dynamics, and aquatic vegetation change or disappearance. Recent restoration projects aim to reconnect disconnected arms to the main channel. The objective of this study was to assess the nutrient dynamics in restored channels during the vegetation colonization process. In spring, summer, and autumn 2009, the phosphorus and nitrogen contents were measured in water, sediment, and plants, sampled in six channels, two reference sites and four restored ones at different dates. Aquatic vegetation was monitored during the same period. Sites were mesotrophic related to the water nutrient concentrations. However, vegetation communities indicated a eutrophic level, as they were dominated by species like Elodea nuttallii, Myriophyllum spicatum, and Potamogeton perfoliatus. Sites were discriminated by P content and mineral nitrogen in the sediment. We showed an effect of species and season on the plant nutrient content, but there was no relationship between plant nutrient content and nutrients in water and sediment. A negative correlation between mean N plant content and the cover of each species was found. Vegetation characteristics (species richness and cover) and bioavailable phosphorus in the sediment were also correlated. In the restored side‐arms of the river Rhine, phosphorus‐rich sediment seems to be important in the recolonization dynamics, as it was linked to higher species richness, whereas nitrogen played a role in the colonization patterns as a growth limiting factor.     

Heterotrophic nitrification by Arthrobacter sp. (strain 9006) as influenced by different cultural conditions,growth state and acetate metabolism

An Arthrobacter sp. (strain 9006), isolated from lake water, accumulated nitrite up to about 15 mg N/l, but no nitrate. In a mineral medium supplemented with tryptone, yeast extract, acetate and ammonium, the cells released nitrite into the medium parallel to growth or when growth had virtually ceased. The nitrite formed was proportional to the initial acetate concentration, indicating an involvement of acetate metabolism with nitrification. The organism grew with a wide variety of organic carbon sources, but washed cells formed nitrite from ammonium only in the presence of citrate, malate, acetate or ethanol. Magnesium ions were required for nitrification of ammonium and could not be replaced by other divalent metal ions. Analysis of the glyoxylate cycle key enzymes in washed suspensions incubated in a minimal medium revealed that isocitrate lyase and malate synthase were most active during the nitrification phase. Nitrite accumulation but not growth was inhibited by glucose, tryptone and yeast extract. A possible explanation for the different nitrification patterns during growth is based on the regulatory properties of glyoxylate cycle enzymes.Abbreviations IL Isocitrate lyase [threo-D_s-isocitrate glyoxylate-lase, E.C. 4.1.3.1.] - MS malate synthase [l-malate glyoxylate-lyase (CoA-acetylating), E.C. 4.1.3.2.]     

Ecological aspects,explosive range extension and impact of a mass invader,Corophium curvispinum Sars, 1895 (Crustacea: Amphipoda), in the Lower Rhine (The Netherlands)

A few years after it invaded, the amphipod Corophium curvispinum Sars appeared to be the most numerous macroinvertebrate species in the River Rhine. From 1987 to 1991 the densities of this species on the stones of groins in the Lower Rhine at a depth of 0.5 m increased from 2 to 200000 specimens per m². In the Lower Rhine and its branches the densities of C. curvispinum increased with increasing current velocities and with increasing water depths. So far, a maximum population density of 750000 specimens per m² has been found in the Lower Rhine, which is many times the densities recorded elsewhere. Population parameters, densities and distribution of C. curvispinum were studied in the Lower Rhine and its branches, using artificial substrates and sampling stones from groins. The success of this immigrant is related to its competitive strategy, which shows several aspects of a r-strategy. In addition, the heavily eutrophicated Lower Rhine provides abundant food (phytoplankton, suspended organic matter) for this opportunistic filter-feeder. The increased salinity and water temperatures in the Lower Rhine resulting from industrial discharges have contributed to the current success of this southern species originating in brackish waters. The very high densities of C. curvispinum might have an enormous impact on the river ecosystem by changing food webs.     

Indicator species drive the key ecological functions of microbiota in a river impacted by acid mine drainage generated by rare earth elements mining in South China

Acid mine drainage (AMD) generated by rare earth elements (REEs) deposits exploration contains high concentrations of REEs, ammonium and sulfates, which is quite different from typical metallic AMD. Currently, microbial responses and ecological functions in REEs-AMD impacted rivers are unknown. Here, 16S rRNA analysis and genome-resolved metagenomics were performed on microbial community collected from a REEs-AMD contaminated river. The results showed that REEs-AMD significantly changed river microbial diversity and shaped unique indicator species (e.g. Thaumarchaeota, Methylophilales, Rhodospirillales and Burkholderiales). The main environmental factors regulating community were pH, ammonium and REEs, among which high concentration of REEs increased REEs-dependent enzyme-encoding genes (XoxF and ExaF/PedH). Additionally, we reconstructed 566 metagenome-assembled genomes covering 70.4% of identifying indicators. Genome-centric analysis revealed that the abundant archaea Thaumarchaeota and Xanthomonadaceae were often involved in nitrification and denitrification, while family Burkholderiaceae were capable of sulfide oxidation coupled with dissimilatory nitrate reduction to ammonium. These indicators play crucial roles in nitrogen and sulfur cycling as well as REEs immobilization in REEs-AMD contaminated rivers. This study confirmed the potential dual effect of REEs on microbial community at the functional gene level. Our investigation on the ecological roles of indicators further provided new insights for the development of REEs-AMD bioremediation.     

Assessment of two techniques for measuring nitrification rates in aerated slurries of seagrass-bed sediments

Two methods were assessed to measure rates of nitrification in aerated slurries of seagras-bed sediments; (1) monitoring ammonium concentrations in samples with and without nitrapyrin ((2-chloro-6-(trichloromethyl) pyridine) treatment and (2) monitoring the accumulation of nitrate plus nitrite. Nitrifying bacteria were inhibited completely after 14 days exposure to nitrapyrin at 5 mg⁻¹, but the effect was poor over shorter periods, probably owing to limited diffusion of the inhibitor. Hence, nitrapyrin was not a satisfactory inhibitor to use in these sediments. Nitrification rates could not be measured by monitoring the concentrations of nitrate plus nitrite, because nitrate reduction occurred simultaneously with nitrification, even though the slurries contained from 3.5 to 8.9 mg O₂ l⁻¹.