Phylogenetic Patterns of the Southeast Asian Tree Frog Chiromantis hansenae in Thailand

Although landscape features such as mountains and rivers are recognized often as limiting factors to amphibian dispersal and gene flow, a limited number of studies have investigated such patterns across Southeast Asia. A perfect example of this is Thailand, located in one of the world＇s biodiversity hotspot regions. Thailand represents the corridor between mainland Asia and the Sunda Shelf, a famous and widely recognized biogeographic region, and yet there are few studies on the genetic structure among populations of amphibian species distributed across Thailand. The Southeast Asian tree frog, Chiromantis hansenae has been reported to possess a geographic range that is restricted to Thailand and, presumably, Cambodia~ Here, we investigate phylogenetic relationships among C. hansenae populations using partial sequences of the mitochondrial 16S rRNA gene and nuclear POMC gene. Our results reveal two distinct evolutionary lineages within C. hansenae populations in Thailand. The genetic divergence among populations between these two clades is considerable, and results support inter-population divergence, and high genetic differentiation （pairwise FsT = 0.97）, between two localities sampled in western Thailand （TK1 and TK2）, separated from each other by 40 kilometers only. The results suggest that landscape features across Thailand may have a profound impact on patterns of diversification in the country, underscoring the urgent need for fine-scale investigations of genetic structure of endemic and ＂widespread＂ species.     

Widespread Co-occurrence of Virulent Pathogens Within California Amphibian Communities

The chytrid fungus Batrachochytrium dendrobatidis, ranaviruses, and trematodes (Ribeiroia ondatrae and echinostomes) are highly virulent pathogens known to infect amphibians, yet the extent to which they co-occur within amphibian communities remains poorly understood. Using field surveillance of 85 wetlands in the East Bay region of California, USA, we found that 68% of wetlands had ≥2 pathogens and 36% had ≥3 pathogens. Wetlands with high pathogen species richness also tended to cluster spatially. Our results underscore the need for greater integration of multiple pathogens and their interactions into amphibian disease research and conservation efforts.     

Niche Contraction of an Endangered Frog Driven by the Amphibian Chytrid Fungus

EcoHealth - Introduced pathogens can alter the geographic distribution of susceptible host species. For example, Batrachochytrium dendrobatidis (Bd) is a fungal pathogen that has been linked to the...     

广州市花地湾市场宠物两栖动物调查

通过对广州市花地湾花鸟鱼虫市场两栖类宠物贸易进行为期3年27次调查,共记录贸易两栖类类44种,隶属2目16科35属。有尾目(Caudata)2科7属8种,钝口螈科(Ambystomatidae)1属2种,蝾螈科(Salamandridae)6属6种;无尾目(Anura)14科28属36种,铃蟾科(Bombinatoridae)1属1种,蟾蜍科(Bufonidae)3属3种,角花蟾科(Ceratophryidae)2属5种,其中1种为杂交种,丛蛙科(Dendrobatidae)2属4种,雨蛙科(Hylidae)3属5种,非洲树蛙科(Hyperoliidae)1属1种,角蟾科(Megophryidae)2属2种,姬蛙科(Microhylidae)5属6种,澳雨蛙科(Pelodryadidae)1属1种,叶泡蛙科(Phyllomedusidae)1属1种,负子蟾科(Pipidae)1属1种,箱头蛙科(Pyxicephalidae)1属1种,蛙科(Ranidae)2属2种,树蛙科(Rhacophoridae)3属3种。分布于国内的两栖类16种,外来物种共28种。受保护种类26种,所占比例达59.09%。讨论了两栖类宠物贸易对国内外珍稀濒危种类保护的压力、对生态系统的压力和对两爬类研究的影响。     

Mitochondrial DNA diversity in Southeast Asian populations

In a previous study of Southeast Asian genetic variation, we characterized mitochondrial DNAs (mtDNAs) from six populations through high-resolution restriction fragment length polymorphism (RFLP) analysis. Our analysis revealed that these Southeast Asian populations were genetically similar to each other, suggesting they had a common origin. However, other patterns of population associations also emerged. Haplotypes from a major founding haplogroup in Papua New Guinea were present in Malaysia; the Vietnamese and Malaysian aborigines (Orang Asli) had high frequencies of haplogroup F, which was also seen in most other Southeast Asian populations; and haplogroup B, defined by the Region V 9-base-pair deletion, was present throughout the region. In addition, the Malaysian and Sabah (Borneo) aborigine populations exhibited a number of unique mtDNA clusters that were not observed in other populations. Unfortunately, it has been difficult to compare these patterns of genetic diversity with those shown in subsequent studies of mtDNA variation in Southeast Asian populations because the latter have typically sequenced the first hypervariable segment (HVS-I) of the control region (CR) sequencing rather than used RFLP haplotyping to characterize the mtDNAs present in them. For this reason, we sequenced the HVS-I of Southeast Asian mtDNAs that had previously been subjected to RFLP analysis, and compared the resulting data with published information from other Southeast Asian and Oceanic groups. Our findings reveal broad patterns of mtDNA haplogroup distribution in Southeast Asia that may reflect different population expansion events in this region over the past 50,000-5,000 years.     

Indian genetic heritage in Southeast Asian populations

The great ethnolinguistic diversity found today in mainland Southeast Asia (MSEA) reflects multiple migration waves of people in the past. Maritime trading between MSEA and India was established at the latest 300 BCE, and the formation of early states in Southeast Asia during the first millennium CE was strongly influenced by Indian culture, a cultural influence that is still prominent today. Several ancient Indian-influenced states were located in present-day Thailand, and various populations in the country are likely to be descendants of people from those states. To systematically explore Indian genetic heritage in MSEA populations, we generated genome-wide SNP data (using the Affymetrix Human Origins array) for 119 present-day individuals belonging to 10 ethnic groups from Thailand and co-analyzed them with published data using PCA, ADMIXTURE, and methods relying on f-statistics and on autosomal haplotypes. We found low levels of South Asian admixture in various MSEA populations for whom there is evidence of historical connections with the ancient Indian-influenced states but failed to find this genetic component in present-day hunter-gatherer groups and relatively isolated groups from the highlands of Northern Thailand. The results suggest that migration of Indian populations to MSEA may have been responsible for the spread of Indian culture in the region. Our results also support close genetic affinity between Kra-Dai-speaking (also known as Tai-Kadai) and Austronesian-speaking populations, which fits a linguistic hypothesis suggesting cladality of the two language families.     

Family Planning Among Southeast Asian Refugees

Five different Southeast Asian groups were studied to document family planning knowledge, attitudes, and practices, and to identify current barriers to care. Significant differences exist among ethnic groups in their knowledge and use of effective methods of contraception, as well as variations in the timing of when to adopt family planning practices and in the preferred number of children. Nearly 70% of the sample had experienced barriers to services, including language, transportation, and a lack of awareness of available services.     

Zoogeography of the Southeast Asian Rotifera

The distribution and taxonomic composition of Rotifera in Southeast Asia is reviewed. For some countries, records are poor: Brunei, Cambodia and Laos are almost terra incognitafor rotifers (<10 taxa recorded), while the Thai rotifer fauna is the best documented (ca. 310 taxa on record). However, analysis of the available data is impeded by fuzzy taxonomy and the questionable reliability of many records. Most studies focus on the pelagic or littoral of freshwater habitats. Other habitats are largely ignored. Similarly, few studies deal comprehensively with illoricate Monogononta, sessile Flosculariacea and Collothecacea and, especially, Bdelloidea. The genera Lecane, Brachionus and Trichocerca are the best represented, with littoral taxa predominant. Fisheries-related studies dealing with highly productive pelagic environments tend to over report the contribution of Brachionus. Most taxa are thermophilic character, exemplified by the dominance of tropic-centred Lecaneand Brachionus. Some cold-water taxa have been recorded, but the relative climatological homogeneity of the region and low number of studies on high-altitude environments prevent the discrimination of clear latitudinal or altitudinal variation in the distribution of rotifers within Southeast Asia. The majority of Southeast Asian rotifers are widely distributed, including true cosmopolites and thermophilic taxa. There are several local or Oriental endemic Rotifera, mostly Lecane. The American Brachionus havanaensis and Keratella americana appear to have been introduced to the region. The taxonomy of some Rotifera described from the region is commented upon; Brachionus murphyiSudzuki is recognised as senior synonym of B. niwati Sanoamuang et al. (syn. nov.). Some cases of geographical and/or ecological vicariant species-pairs are suggested. The Southeast Asian rotifer fauna contains a sizeable fraction of taxa occurring in the tropical regions of the Old World, most of which also occur in tropical Australia or the Austro-Malayan region. A tropical Australasian faunal component is present, but consists of few taxa only. Hence, affinities between the rotifer fauna of the Ethiopian, Oriental and tropical Australian and Austro-Malayan regions are supported, rather than an affinity between the Indo-Asian or Indo-Malaysian and tropical Australian fauna.     

Health Status of Southeast Asian Refugees

The rates of several diseases have been reported to be higher among Southeast Asian refugees compared with those of indigenous North Americans. When we prospectively evaluated 991 refugees new to the Denver metropolitan area for their health and immunization status over a 12-month period, 38% were found to be tuberculin-positive, 71% carried one or more enteric parasites, 15% were HBsAg-positive, 13% had anemia and 31% either presented without immunization records or required continuation of vaccination sequences begun in overseas camps. Age and ethnicity were important variables with regard to tuberculosis, hepatitis B and anemia. The rates of specific parasitic infestations varied among the four ethnic groups, though the overall rates of parasitosis remained constant across ethnic lines.     

Precipitation Constrains Amphibian Chytrid Fungus Infection Rates in a Terrestrial Frog Assemblage in Jamaica,West Indies

We model Batrachochytrium dendrobatidis (Bd) infection rates in Jamaican frogs—one of the most threatened amphibian fauna in the world. The majority of species we surveyed were terrestrial direct‐developing frogs or frogs that breed in tank bromeliads, rather than those that use permanent water bodies to breed. Thus, we were able to investigate the climatic correlates of Bd infection in a frog assemblage that does not rely on permanent water bodies. We sampled frogs for Bd across all of the major habitat types on the island, used machine learning algorithms to identify climatic variables that are correlated with infection rates, and extrapolated infection rates across the island. We compared the effectiveness of the machine learning algorithms for species distribution modeling in the context of our study, and found that infection rate rose quickly with precipitation in the driest month. Infection rates also increased with mean temperature in the warmest quarter until 22 °C, and remained relatively level thereafter. Both of these results are in accordance with previous studies of the physiology of Bd. Based on our environmental results, we suggest that frogs occupying high‐precipitation habitats with cool rainy‐season temperatures, though zcurrently experiencing low frequencies of infection, may experience an increase in infection rates as global warming increases temperatures in their habitat.     

Impending conservation crisis for Southeast Asian amphibians

With an understudied amphibian fauna, the highest deforestation rate on the planet and high harvesting pressures, Southeast Asian amphibians are facing a conservation crisis. Owing to the overriding threat of habitat loss, the most critical conservation action required is the identification and strict protection of habitat assessed as having high amphibian species diversity and/or representing distinctive regional amphibian faunas. Long-term population monitoring, enhanced survey efforts, collection of basic biological and ecological information, continued taxonomic research and evaluation of the impact of commercial trade for food, medicine and pets are also needed. Strong involvement of regional stakeholders, students and professionals is essential to accomplish these actions.     

Southeast Asian biodiversity: an impending disaster

Southeast Asia has the highest relative rate of deforestation of any major tropical region, and could lose three quarters of its original forests by 2100 and up to 42% of its biodiversity. Here, we report on the current state of its biota and highlight the primary drivers of the threat of extinction now faced by much of the unique and rich fauna and flora of the region. Furthermore, the known impacts on the biodiversity of Southeast Asia are likely to be just the tip of the iceberg, owing to the paucity of research data. The looming Southeast Asian biodiversity disaster demands immediate and definitive actions, yet such measures continue to be constrained by socioeconomic factors, including poverty and lack of infrastructure. Any realistic solution will need to involve a multidisciplinary strategy, including political, socioeconomic and scientific input, in which all major stakeholders (government, non-government, national and international organizations) must participate.     

Zoogeographical distribution of Southeast Asian freshwater Calanoida

This paper reviews the systematic status and geographical distribution of 30 odd species of freshwater calanoid copepods in Southeast Asia. Three regions are delineated based on the diversity and abundance of these organisms; Region I being the Southasiatic element, Region II the attenuated belt of copepods and Region III rich in endemic species. The implication of a north-south diminishing of copepod species to inland fisheries is postulated.     

Subcutaneous fat remodelling in Southeast Asian infants and children

Longitudinal data on 1,048 Thai children were evaluated for evidence of subcutaneous fat remodelling. Fat distribution, as defined by 100 (triceps/[triceps + subscapular]), was more pronounced in the limbs during infancy but shifted toward the trunk thereafter. Subsequent stepwise regression analysis indicated that biological age--as measured by Gruelich-Pyle bone age--and weight together explained between 0.8% and 14.5% of variance in fat distribution, with generally larger R2 values over age and for males. Relationships were curvilinear, with sex differences in slope. Path analysis supported the model that weight was a major causal agent primarily after infancy, whereas biological age had a small influence both in infancy and in late childhood. These findings indicate that trunk fat deposition is a normal feature of childhood. They also suggest that hypotheses which associate elevated trunk fatness with disorders of glucose metabolism are invalid for younger children.     

Phylogeny and cryptic diversification in Southeast Asian flying geckos

The closed-canopy forests of Southeast Asia are home to an impressive number of vertebrates that have independently evolved morphologies that enhance directed aerial descent (gliding, parachuting). These assemblages include numerous mammal, frog, snake, and lizard clades. Several genera of gekkonid lizards, in particular, have evolved specialized structures such as cutaneous expansions, flaps, and midbody patagia, that enhance lift generation in the context of unique gliding and parachuting locomotion. The genus Ptychozoon represents arguably the most morphologically extreme, highly specialized clade of gliding geckos. Despite their notoriety and celebrated locomotor ability, members of the genus Ptychozoon have never been the subject of a species-level molecular phylogenetic analysis. In this paper, we utilize molecular sequence data from mitochondrial and nuclear gene fragments to estimate the evolutionary relationships of this unique group of flying geckos. Capitalizing on the recent availability of genetic samples for even the rarest of known species, we include the majority of known taxa and use model-based phylogenetic methods to reconstruct their evolutionary history. Because one species, P. kuhli, exhibits an unusually wide distribution coupled with an impressive range of morphological variation, we additionally use intensive phylogeographic/population genetic sampling, phylogenetic network analyses, and Bayesian species delimitation procedures to evaluate this taxon for the possible presence of cryptic evolutionary lineages. Our results suggest that P. kuhli may consist of between five and nine unrecognized, distinct species. Although we do not elevate these lineages to species status here, our findings suggest that lineage diversity in Ptychozoon is likely dramatically underestimated.     

Entamoeba polecki infection in a Southeast Asian refugee in Japan

We report the first human case of Entamoeba polecki infection found in Japan. Cysts of E. histolytica-like amoeba were detected in a stool sample from a female Cambodian refugee. The cysts were morphologically investigated after stained by the modified Kohn's method. The amoeba was identified as E. polecki by the findings that the cyst had frequently an inclusion mass, usually one or very rarely two nuclei, frequently a darkly stained nucleus, and some other characteristics. This protozoan parasite is essentially non-pathogenic to humans, but it is morphologically similar to and often confused with E. histolytica, a pathogenic species. Therefore, it is very important in laboratory diagnosis to differentiate the former from the latter.     

东南亚留学生神经病学见习课教学浅谈

目的:探讨如何上好东南亚留学生神经病学见习课,为促进医学高等教育国际化提供依据.方法:在神经病学见习课教学中采用提高教师英语素质、充分准备病例、采用肢体语言及结合影像学资料等方法对东南亚留学生神经病学见习课进行教学.结果:上述方法能使这些留学生对神经病产生兴趣,从而达到较好的教学效果.结论:根据东南亚留学生的特殊情况,在神经病学见习中多种教学方式的灵活运用能达到理想的教学效果.     

The state and conservation of Southeast Asian biodiversity

Southeast Asia is a region of conservation concern due to heavy losses of its native habitats. In this overview, we highlight the conservation importance of Southeast Asia by comparing its degree of species endemism and endangerment, and its rate of deforestation with other tropical regions (i.e., Meso-America, South America, and Sub-Saharan Africa). Southeast Asia contains the highest mean proportion of country-endemic bird (9%) and mammal species (11%). This region also has the highest proportion of threatened vascular plant, reptile, bird, and mammal species. Furthermore, not only is Southeast Asia’s annual deforestation rate the highest in the tropics, but it has also increased between the periods 1990–2000 and 2000–2005. This could result in projected losses of 13–85% of biodiversity in the region by 2100. Secondary habitat restoration, at least in certain countries, would allow for some amelioration of biodiversity loss and thus potentially lower the currently predicted extinction rates. Nonetheless, urgent conservation actions are needed. Conservation initiatives should include public education, sustaining livelihoods, and ways to enhance the sustainability of agriculture and increase the capacity of conservation institutions. Furthermore, these actions should be country-specific and not ignore areas heavily populated by humans, as they can also harbour high numbers of threatened species. We urge that cooperative conservation initiatives be undertaken and support (e.g., capacity-building) be given by more developed countries in the region and beyond.