Diversity and biogeography of vascular epiphytes in Western Amazonia, Yasuní, Ecuador

Aim Although vascular epiphytes are important components of species richness and complexity of Neotropical forests, vascular epiphytes are under‐represented in large scale biogeographical analyses. We studied the diversity, biogeography and floristic relationships of the epiphytic flora of the Yasuní region (Western Amazonia) in a Neotropical context, with special emphasis on the influence of the Andean flora on floristic composition and diversity of surrounding lowland forests. Location Western Amazonian lowland rainforest, Tiputini Biodiversity Station (0°38′ S 76°09′ W, 230 m a.s.l., 650 ha), Yasuní National Park, Ecuador. Methods We compared the vascular epiphyte flora of Yasuní with 16 published Neotropical epiphyte inventories. Secondly, based on a floristic database with records of more than 70,000 specimens of vascular epiphytes from the Neotropics the elevational composition of eight selected inventories was analysed in detail. Results The vascular epiphyte flora of Yasuní is characterized by a very high species richness (313 spp.). A moderate portion of species is endemic to the Upper Napo region (c. 10%). However, this figure is much higher than previous analyses primarily based on woody species suggested. Geographical ranges of these species match with a proposed Pleistocene forest refuge. Compared with Northern and Central Amazonian sites, Western Amazonian epiphyte communities are characterized by a higher portion of montane and submontane species. Species richness of vascular epiphytes at the sites was correlated with the amount of rainfall, which is negatively correlated with the number of dry months. Main conclusion Recent and historic patterns of rainfall are the driving forces behind diversity and floristic composition of vascular epiphytes in Western Amazonia: high annual rainfall in combination with low seasonality provides suitable conditions to harbour high species richness. The proximity to the Andes, the most important centre of speciation for most Neotropical epiphytic taxa, in combination with the climatic setting has allowed a continuous supply of species richness to the region. At least for epiphytes, the borderline between the Andean and Amazonian flora is much hazier than previously thought. Moreover, the comparatively moist climate in Western Amazonia during the Pleistocene has probably led to fewer extinctions and/or more speciation than in more affected surrounding lowlands.     

Cladistic biogeography of the Neotropical region: identifying the main events in the diversification of the terrestrial biota

A cladistic biogeographical analysis was undertaken to identify the main events in the biotic diversification of the terrestrial Neotropical biota. For the 36 animal and plant taxa analysed, a component × area matrix was constructed, associating geographical data only with informative nodes, and it was analysed under implied weights using the software TNT. The general area cladogram obtained shows that the Neotropical region constitutes a monophyletic unit, with a first split separating the Antilles and a second one dividing the continental areas into a north‐western and a south‐eastern component. Within the north‐western component the areas split following the sequence northern Amazonia, south‐western Amazonia, north‐western South America, and Mesoamerica. Within the south‐eastern component the areas split following the sequence south‐eastern Amazonia, Chaco, and Parana. The three main components are treated as subregions: Antillean, Amazonian (northern Amazonian, south‐western Amazonian, Mesoamerican, and north‐western South American dominions), and Chacoan (south‐eastern Amazonian, Chacoan, and Parana dominions). Dispersal and vicariant events postulated to explain these pattens might have occurred during the Cretaceous, when the Caribbean plate collided with the Americas, a combination of eustatic sea‐level changes and tectonic deformations of the continental platform exposed large parts of South America to episodes of marine transgressions, and the Andean uplift reconfigured the Amazonian area. Tertiary and Quaternary events are assumed to have later induced the diversification within these large biogeographical units.     

Riverine landscape diversity

1. This review is presented as a broad synthesis of riverine landscape diversity, beginning with an account of the variety of landscape elements contained within river corridors. Landscape dynamics within river corridors are then examined in the context of landscape evolution, ecological succession and turnover rates of landscape elements. This is followed by an overview of the role of connectivity and ends with a riverine landscape perspective of biodiversity. 2. River corridors in the natural state are characterised by a diverse array of landscape elements, including surface waters (a gradient of lotic and lentic waterbodies), the fluvial stygoscape (alluvial aquifers), riparian systems (alluvial forests, marshes, meadows) and geomorphic features (bars and islands, ridges and swales, levees and terraces, fans and deltas, fringing floodplains, wood debris deposits and channel networks). 3. Fluvial action (erosion, transport, deposition) is the predominant agent of landscape evolution and also constitutes the natural disturbance regime primarily responsible for sustaining a high level of landscape diversity in river corridors. Although individual landscape features may exhibit high turnover, largely as a function of the interactions between fluvial dynamics and successional phenomena, their relative abundance in the river corridor tends to remain constant over ecological time. 4. Hydrological connectivity, the exchange of matter, energy and biota via the aqueous medium, plays a major though poorly understood role in sustaining riverine landscape diversity. Rigorous investigations of connectivity in diverse river systems should provide considerable insight into landscape‐level functional processes. 5. The species pool in riverine landscapes is derived from terrestrial and aquatic communities inhabiting diverse lotic, lentic, riparian and groundwater habitats arrayed across spatio‐temporal gradients. Natural disturbance regimes are responsible for both expanding the resource gradient in riverine landscapes as well as for constraining competitive exclusion. 6. Riverine landscapes provide an ideal setting for investigating how complex interactions between disturbance and productivity structure species diversity patterns.     

Patterns of Amazonian area relationships based on raw distributions of papilionid butterflies (Lepidoptera: Papilioninae)

Diversifications within a biota are due to several factors. Although some of these are untestable with current analytical methods, hierarchical congruence obtained with different cladistic methods and based on independent taxa are undoubtedly important. In the recent past, most hypotheses of historical biogeography (e.g. refugial, riverine, disturbance, vicariance) were tested on the Amazonian biota, selecting a number of diverse organisms such as plants, anurans, lizards, butterflies, birds and monkeys. In this study we used parsimony analysis of endemicity to infer historical relationships among 16 interfluvial areas in the Amazonian lowlands based on raw distributions of 114 Papilioninae (Lepidoptera). The analysis yielded two most parsimonious trees of area relationships. One tree was characterized by two main clusters of areas which showed a separation of Guyanan + south-east Amazonian interfluvial areas from western Amazonian interfluvial areas. The second tree showed the Guyanan interfluvial areas basal to a cluster which included all the other interfluvial areas. This latter cluster was subdivided into two main groups of areas separating the south-east Amazonian and the western Amazonian interfluvial areas. This result is discussed in the light of previous hypotheses obtained with the same method using some vertebrate taxa in the Amazonian lowlands. Likewise, comparisons with other hypotheses on lineages of birds, mammals and butterflies obtained applying cladistic biogeographical methods are made. The two alternative vicariant patterns presented for papilionid butterflies are strictly congruent with those for birds.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 82 , 345–357.     

A mid-Holocene environmental change in Amazonian savannas

Aim The main goal of this study was to investigate how climate and human activities may have influenced ecotonal areas of disjoint savannas within Brazilian Amazonia. Location Eastern Brazilian Amazonia, Amapá State. Methods The fossil pollen and charcoal records of two lakes in Amapá (Marcio and Tapera) were used to provide a Holocene palaeoecological history of eastern Amazonian savannas. Detrended correspondence analysis was used to enhance the patterns of sample distribution along the sediment core. Results Even though sedimentary hiatuses were recognized in the sediment cores from both lakes, a marked change in vegetation from closed forests with swamp elements to open flooded savanna at c. 5000 yr bp was evident from the pollen record. Charcoal analysis revealed a pattern of increased accumulation of charred particles coincident with the establishment of savanna vegetation, suggesting higher fire frequency near the lakes. Because the timing of the sedimentary hiatus overlapped with the highest Holocene sea level, which would have increased the local water table preventing the lakes from drying out, we infer that both lakes used to depend heavily on flood waters, and the sedimentary gap was caused by reduced discharge from the Amazon River, due to a dry period in the Andes, when precipitation levels markedly decreased between 8000 and 5000 yr bp . The lack of Andean pollen (probably river transported) in the sediment record after this event and the existence of similar records near the study site make this interpretation more appealing. The resumption of sedimentation in Lake Marcio, contemporaneous with falling sea level and increasingly wet conditions in the Andes after 5000 yr bp , indicates that Holocene sea‐level variation did not play an important role in maintaining lake levels. Main conclusions The study site recorded long‐term occupation by pre‐Columbian peoples. However, it is still unclear whether these disjoint savannas have an anthropogenic origin. Even though locally dry environmental conditions were inferred from both records, there is no evidence of a mid‐Holocene dry climate in eastern Amazonia. Instead, the Amapá record indicates a connection between Andean climate and eastern Amazonia, demonstrating the need for a better understanding of the impacts and magnitude of climate changes.     

Terrestrial invertebrates inhabiting lowland river floodplains of Central Amazonia and Central Europe: a review

1. Amazonian terrestrial invertebrates produce high population densities during favourable periods and may suffer a drastic decrease during occasional floods and droughts. However, the monomodal, predictable flood pulse of the larger Amazonian rivers favours the development of morphological (respiratory organs, wing‐dimorphism), phenological (synchronization of life cycles, univoltine mode of life), physiological (flooding ability, gonad dormancy, alternating number of developmental stages), and behavioural adaptations (migration, temporal diving) with numerous interactions. 2. In lowlands of Central Europe, the flood pulse of large rivers is less predictable than in Central Amazonia and is superimposed by the seasonal light/temperature pulse (summer/winter regime). Some terrestrial invertebrates show physiological resistance against inundation or drought, phenologies fitting the normal annual rhythm of water level fluctuation (quiescence or diapause of eggs or adult invertebrates), high dispersal ability and migration. However, most species survive simply using a `risk strategy', combining high reproduction rates, dispersal and reimmigration following catastrophic events. 3. The diversity of species in terrestrial invertebrates is lower in lowland riverine ecosystems of Central Amazonia and Central Europe compared with the respective uplands because of flood stress in these systems. However, floodplains in Central Amazonia possess a greater number of endemic species in comparison with Central European floodplains because of long periods of fairly stable climatic conditions in comparison with large palaeoclimatic changes in Central Europe.     

An alternative hypothesis for the origin of Amazonian bird diversity

Aim To determine the origin of the high diversity of birds and other animals and plants in Amazonia. Previous hypotheses are: palaeogeography hypothesis, river hypothesis, river-refuge hypothesis, refuge hypothesis, disturbance-vicariance hypothesis, gradient hypothesis, pest-pressure hypothesis, intermediate disturbance hypothesis, riverine disturbance hypothesis, models of fine-scale habitat heterogeneity, lake hypothesis, and museum hypothesis. Methods At present there is agreement between areas of high species diversity and sites located over 100 m. As these sites would have been islands during a sea-level rise of this value, it was important to determine the probable distribution of these islands in Amazonia during a marine transgression. For that purpose, I traced the 100 m contour line from topographic maps. Results Two broad marine transgressions would have been produced from the Atlantic Ocean via the Amazon and Orinoco rivers. Two very large islands would have been formed to the north of the Amazon River, and other islands and archipelagos would have been formed along the coastal lowlands of Guiana, and at the periphery of the Amazon basin. The area located between the Solimoýes and Negro rivers and in the lower Branco would have been completely covered by the sea. Main conclusions A substantial part of the high diversity of forest and nonforest birds in lowland Amazonia can be hypothetysed to have originated during sea-level rises of about 100 m in the Quaternary and late Tertiary. These transgressions would have fragmented the Amazonian lowland into a large number of true islands and archipelagos, thus favouring active allopatric speciation. Values appreciably higher than 100 m above the present sea-level during previous periods of the Tertiary would have produced segregation of the biota earlier than the Tertiary–Quaternary boundary. Sea-level rises and vegetational changes (by aridity or cooling) would thus have driven the speciation pump, and local disturbances and other processes, would maintain the diversity.     

Effects of the duration of flooding on species richness and floristic composition in three hectares in the Jau´ National Park in floodplain forests in central Amazonia

Rivers in Central Amazonia show annual water level fluctuations of up to 14m; the flooding period ranges from 50 to 270 days between the rising and falling phases. Differences in duration and type of flood in Amazonian floodplain forests result in a mosaic of habitats which include lakes, grasslands, forests, streams etc. To study the floristic composition, structure, variation on number of species and diversity in a forest that is seasonally flooded by a black-water river in Brazilian Amazonia, 200km NE of Manaus, I surveyed three hectares in habitats which included lake, river margin, and stream. The number of species per hectare ranged from 44 to 137. The number of trees varied from 796 to 1130. Total basal area ranged from 22.3m2 to 41.8m2. Leguminosae was the most abundant and dominant family in the river margin and stream plot, while Euphorbiaceae and Leguminosae were, respectively the most abundant and dominant families in the lake plot. The most dominant species in the river margin and stream plots was Aldina latifolia (Leguminosae), while Amanoa oblongifolia (Euphorbiaceae) was the most abundant and dominant species in the lake plot. Mean water level and flooding period decreased significantly from lake to the river margin to the stream. The mean number of species and the Shannon diversity increase significantly from the lake to the river margin to the stream habitats plots. Similarity indexes varied from 0.3 to 0.55% between the three plots sampled in this study.     

Bayesian phylogeography of the Arawak expansion in lowland South America

Phylogenetic inference based on language is a vital tool for tracing the dynamics of human population expansions. The timescale of agriculture-based expansions around the world provides an informative amount of linguistic change ideal for reconstructing phylogeographies. Here we investigate the expansion of Arawak, one of the most widely dispersed language families in the Americas, scattered from the Antilles to Argentina. It has been suggested that Northwest Amazonia is the Arawak homeland based on the large number of diverse languages in the region. We generate language trees by coding cognates of basic vocabulary words for 60 Arawak languages and dialects to estimate the phylogenetic relationships among Arawak societies, while simultaneously implementing a relaxed random walk model to infer phylogeographic history. Estimates of the Arawak homeland exclude Northwest Amazonia and are bi-modal, with one potential homeland on the Atlantic seaboard and another more likely origin in Western Amazonia. Bayesian phylogeography better supports a Western Amazonian origin, and consequent dispersal to the Caribbean and across the lowlands. Importantly, the Arawak expansion carried with it not only language but also a number of cultural traits that contrast Arawak societies with other lowland cultures.     

Biogeography and evolution of Amazonian triatomines (Heteroptera: Reduviidae): implications for Chagas disease surveillance in humid forest ecoregions

An ecological-evolutionary classification of Amazonian triatomines is proposed based on a revision of their main contemporary biogeographical patterns. Truly Amazonian triatomines include the Rhodniini, the Cavernicolini, and perhaps Eratyrus and some Bolboderini. The tribe Rhodniini comprises two major lineages (pictipes and robustus). The former gave rise to trans-Andean (pallescens) and Amazonian (pictipes) species groups, while the latter diversified within Amazonia (robustus group) and radiated to neighbouring ecoregions (Orinoco, Cerrado-Caatinga-Chaco, and Atlantic Forest). Three widely distributed Panstrongylus species probably occupied Amazonia secondarily, while a few Triatoma species include Amazonian populations that occur only in the fringes of the region. T. maculata probably represents a vicariant subset isolated from its parental lineage in the Caatinga-Cerrado system when moist forests closed a dry trans-Amazonian corridor. These diverse Amazonian triatomines display different degrees of synanthropism, defining a behavioural gradient from household invasion by adult triatomines to the stable colonisation of artificial structures. Anthropogenic ecological disturbance (driven by deforestation) is probably crucial in the onset of the process, but the fact that only a small fraction of species effectively colonises artificial environments suggests a role for evolution at the end of the gradient. Domestic infestation foci are restricted to drier subregions within Amazonia; thus, populations adapted to extremely humid rainforest microclimates may have limited chances of successfully colonising the slightly drier artificial microenvironments. These observations suggest several research avenues, from the use of climate data to map risk areas to the assessment of the synanthropic potential of individual vector species.     

Historical biogeography of South American freshwater fishes

Aim To investigate biogeographical patterns of the obligate freshwater fish order Characiformes. Location South America. Methods Parsimony analysis of endemicity, likelihood analysis of congruent geographical distribution, and partition Bremer support were used. Results Areas of endemism are deduced from parsimony analysis of endemicity, and putative dispersal routes from a separate analysis of discordant patterns of distribution. Main conclusions Our results demonstrate the occurrence of 11 major areas of endemism and support a preferential eastern–western differentiation of the characiforms in the Amazonian region, contrasting with the southern–northern differentiation of terrestrial organisms. The areas of endemism identified seem to be deeply influenced by the distribution of the emerged land during the 100‐m marine highstand that occurred during the late Miocene and allow us to hypothesize the existence of eight aquatic freshwater refuges at that time. The raw distribution of non‐endemic species supports nine patterns of species distribution across the 11 areas of endemism, two of which support a southern–northern differentiation in the eastern part of the Amazon. This result shows that the main channel of the Amazon limited dispersal between tributaries from each bank of the river. The levels of endemism further demonstrate that the aquatic freshwater refuges promoted allopatric speciation and later allowed the colonization of the lowlands. By contrast, the biogeographical pattern found in the western part of the Amazon is identified as a result of the Miocene Andean foreland dynamic and the uplift of the palaeoarches that promoted allopatric divergence across several sedimentary basins by the establishment of disconnected floodplains. The assessment of conflicting species distributions also shows the presence of seven putative dispersal routes between the Amazon, Orinoco and Paraná rivers. Our findings suggest that, rather than there being a single predominant process, the establishment of the modern South American freshwater fish biotas is the result of an interaction between marine incursions, uplift of the palaeoarches, and historical connections allowing cross‐drainage dispersal.     

Spanish salt lakes: Their chemistry and biota

A large number of small saline lakes are distributed throughout Spain. Four main lake districts occur from sea level to 1000 m.a.s.l. Most lakes are temporary because of the arid conditions in the Spanish endorheic areas. Many lakes are situated in Tertiary depressions in NE. and S. Spain. Lake basins were formed in karstic areas by hydrologic and aeolian erosion. Saline lakes in NE. Spain occupy areas isolated between river basins. The major ions encountered in these lakes are usually sodium-chloride and magnesium-sulphate; sodium carbonate or sodium-sulphate rich waters also occur.The biota of Spanish salt lakes is related to that of a larger biogeographical region which includes the Mediterranean countries. The main types of salt lakes in Spain include: (1) temporarily mineralized but not highly saline lakes, salinity is less than 7 g l^-1. Chara canescens, C. aspera, Zanichellia palustris, Daphnia atkinsoni, Mixodiaptomus incrassatus and Arctodiaptomus wierzejskii are the most characteristic organisms. (2) Temporary salt lakes, salinity fluctuates between 7 and 300 g l^-1. Chara galioides, Lamprothamnion papulosum, Daphnia mediterranea, Arctodiaptomus salinus and Cletocamptus retrogressus are the most common species. (3) Permanent salt lakes, Ruppia maritima, Najas marina and Artemia salina are the characteristic organisms.     

Postglacial dispersal patterns and mitochondrial genetic structure of the Pyrenean desman (Galemys pyrenaicus) in the northwestern region of the Iberian Peninsula

The genetic structure of small semiaquatic animals may be influenced by dispersal across both rivers and land. The relative importance of these two modes of dispersal may vary across different species and with ecological conditions and evolutionary periods. The Pyrenean desman (Galemys pyrenaicus) is an endemic mammal of the Iberian Peninsula with a strong phylogeographic structure and semiaquatic habits, thus making it an ideal model to study the effects of river and overland dispersal on its genetic structure. Thanks to different types of noninvasive samples, we obtained an extensive sampling of the Pyrenean desman from the northwestern region of the Iberian Peninsula and sequenced two mitochondrial DNA fragments. We then analyzed, using an isolation‐by‐distance approach, the correlation between phylogenetic distances and geographical distances measured along both river networks and land to infer the relative importance of river and overland dispersal. We found that the correlations in the whole area and in a large basin were consistent with an effect of overland dispersal, which may be due to the postglacial colonization of new territories using terrestrial corridors and, possibly, a more extensive fluvial network that may have been present during the Holocene. However, in a small basin, likely to be less influenced by the impact of ancient postglacial dispersal, the correlations suggested significant overall effects of both overland and river dispersal, as expected for a semiaquatic mammal. Therefore, different scales and geographical regions reflect different aspects of the evolutionary history and ecology of this semiaquatic species using this isolation‐by‐distance method. The results we obtained may have crucial implications for the conservation of the Pyrenean desman because they reinforce the importance of interbasin dispersal for this species in the studied area and the need to protect the whole riverine ecosystem, including rivers, upland streams and terrestrial corridors between basins.     

Ridges and rivers: a test of competing hypotheses of Amazonian diversification using a dart-poison frog (Epipedobates femoralis).

Mitochondrial DNA cytochrome b sequence data from a dart-poison frog, Epipedobates femoralis, were used to test two hypotheses of Amazonian diversification: the riverine barrier and the ridge hypotheses. Samples were derived from sites located on both banks of the Rio Juruá and on both sides of the Iquitos Arch in western Amazonia. The phylogeographic structure was inconsistent with predictions of the riverine barrier hypothesis. Haplotypes from opposite river banks did not form monophyletic clades in any of our phylogenetic analyses, nor was the topology within major clades consistent with the riverine hypothesis. Further, the greatest differentiation between paired sites on opposite banks was not at the river mouth where the strongest barrier to gene flow was predicted to occur. The results instead were consistent with the hypothesis that ancient ridges (arches), no longer evident on the landscape, have shaped the phylogeographic relationships of Amazonian taxa. Two robustly supported clades map onto opposite sides of the Iquitos Arch. The mean haplotypic divergence between the two clades, in excess of 12%, suggests that this cladogenic event dates to between five and 15 million years ago. These estimates span a period of major orogenesis in western South America and presumably the formation of these ancient ridges.     

Spatial and temporal patterns of light attenuation among lakes of the Mackenzie Delta

SUMMARY 1. The seasonal dynamics of light attenuation, and the relative roles of total suspended solids (TSS), dissolved organic carbon (DOC) and chlorophyll as light attenuators among two sets of lakes in the Mackenzie Delta, were assessed during the open‐water periods of 1998 and 1999. 2. The first set consisted of 40 spatially discrete lakes where the frequency of flooding with river water was controlled by sill height (‘sill‐set lakes’). The second set consisted of a chain of six lakes connected to a main river channel (frequently flooded, all with same frequency), but where riverine influence was controlled by the distance from the channel connection point (‘chain‐set lakes’). 3. As the flooding frequency of lakes decreased (sill‐set), and as the distance from the channel connection point increased (chain‐set), lake water became increasingly transparent and the stability (decreasing temporal variability) of underwater light increased. 4. The effect of flooding on transparency was greater in years with a high minimum summer water level. However, the effect of river flooding on lake water transparency was damped more by an increase in the frequency and duration of flooding than by an increase in distance from the channel connection point. 5. The index of scattering was linearly related to TSS over the common range of concentrations in both sets of lakes. The specific attenuation coefficient for TSS (and scattering) increased substantially from the most turbid to the most transparent waters. 6. During the summer, DOC provided an approximate index of water colour in the sill‐set lakes but not in the chain‐set lakes, where the gradient of DOC ran counter to the gradient of water colour. The specific attenuation coefficient for water colour was roughly constant among both sets of lakes. 7. Calculations of partial attenuation show that, during the spring flood peak, TSS is the dominant attenuator among most lakes, other than those with high sills or positioned far from channel connection points. During the lengthy summer period of open water, however, water colour appeared to be the most important light attenuator among almost all of the lakes in the central delta, with chlorophyll a of only minor importance. 8. Lakes of the Mackenzie Delta may be quite sensitive to changes in climate and ultraviolet‐b (UV‐b) radiation in the circumpolar arctic because of the role of DOC as an attenuator of photosynthetically active radiation and UV‐b irradiance and as an energy source for microbial foodwebs in this system.     

Modelling distribution patterns in a species-rich plant genus, Anthurium (Araceae), in Ecuador

Modelling potential species distributions has become a powerful tool for botanists in recent years. Using herbarium specimen data and GIS desktop software, we modelled the potential distribution of 36 endemic and 47 non‐endemic species of Anthurium (Araceae) in Ecuador based on mean annual temperature and humidity. Our results indicate the most important region for endemics in western Ecuador lies between the Andes and Coastal mountain ranges between 200 and 700 m, while for eastern Ecuador a belt of potential high diversity occurs directly along the foothills of the Andes under 1000 m. A very interesting result of this study highlights a site of predicted high species diversity at the borders of Guyas, Cañar, Bolivar, and Chimborazo, as well as sites within the Cordillera del Condor along the border with Peru. Potential richness for non‐endemic Anthurium species was similar to that of endemics with the inclusion of a large area of Amazonian lowlands in the east of the country. Over 40% of the protected areas in Ecuador occur in the eastern Amazonian lowlands, an area of low diversity for Anthurium endemics. Overall, for areas with potential high concentrations of endemic species identified in this study, only 3.1% are within Ecuador's protected areas.     

Amazon fish bacterial communities show structural convergence along widespread hydrochemical gradients

The world's richest freshwater fish community thrives in gradients of contrasting environments in Amazonia, ranging from ion‐poor acidic black waters, to ion‐rich circumneutral white waters. These hydrochemical gradients structure Amazonian fish assemblages via ecological speciation events. Fish bacterial communities contain an important genetic heritage essential for their hosts' survival and are also involved in adaptive divergence via niche adaptation processes, but the extent to which they evolve in response to hydrochemical gradients in Amazonia is unknown. Here we investigated bacterial communities (gut and skin mucus) of two ecologically and phylogenetically divergent host species (Mesonauta festivus and Serrasalmus rhombeus) distributed throughout these hydrochemical gradients. The goal was to characterize intra‐ and interspecific Amazonian fish microbiome variations across multiple scales. Using a 16S metabarcoding approach, we investigated the microbiota of 43 wild M. festivus, 32 S. rhombeus and seven water samples, collected at seven sampling sites encompassing both water colours. Taxonomical structures of bacterial communities from both host species were significantly correlated to the environmental continua of magnesium, sodium, dissolved organic carbon, calcium, dissolved O₂, pH, potassium, hardness and chloride. Analysis of discriminating features in community structures across multiple scales demonstrated intra‐ and interspecific structural parallelisms in the response to the hydrochemical gradients. Together, these parallelisms suggest the action of selection on bacterial community structures along Amazonian hydrochemical gradients. Functional approaches along with reciprocal transplant experiments will provide further insights on the potential contribution of Amazonian fish microbiomes in host adaptation and ecological speciation events.     

The influence of macrophyte beds on plankton communities and their export from fluvial lakes in the St Lawrence River

1. To determine the influence of macrophyte beds on plankton abundance within fluvial lakes of the St Lawrence River, planktonic components (macrozooplankton, heterotrophic bacteria, and phytoplankton as chlorophyll- a [Chl- a ]) were sampled in Lake St Francis and Lake St Pierre during summer 1998. We tested the hypothesis that the abundance of planktonic components was higher within macrophyte beds in comparison to the more rapidly flushed open water areas of the fluvial lakes.
2. The large cross channel variation in zooplankton biomass was indeed correlated with the presence of dense beds of submerged macrophytes. Total macrozooplankton biomass was nine-fold greater within the beds (mean=180 μg L−1 dry mass) than in either the open water or areas with only sparse vegetation (mean=20 μg L−1 dry mass).
3. Chl- a and heterotrophic bacterial abundance were also higher in the beds, but only slightly so. There was no difference in total phosphorus or dissolved organic carbon concentrations between areas of dense vegetation, sparse vegetation or open water.
4. Macrophyte beds on the margins of the fluvial lakes allow the development of high planktonic abundance relative to the fast flowing central channel. Macrozooplankton biomass was much higher at the outflows of the lakes (∼50 μg L−1 dry mass) in comparison to the inflows (<20 μg L−1 dry mass). The increase is due to the transfer of organisms from submerged macrophyte beds into the central channel in the downstream quarter of the two lakes where the marginal littoral waters enter central channel waters.
5. Along rivers, shallow fluvial lakes appear to act as sources of plankton which is exported downstream during years of extensive littoral macrophyte development.     

Ecosystem state shifts during long‐term development of an Amazonian peatland

The most carbon (C)‐dense ecosystems of Amazonia are areas characterized by the presence of peatlands. However, Amazonian peatland ecosystems are poorly understood and are threatened by human activities. Here, we present an investigation into long‐term ecohydrological controls on C accumulation in an Amazonian peat dome. This site is the oldest peatland yet discovered in Amazonia (peat initiation ca. 8.9 ka BP), and developed in three stages: (i) peat initiated in an abandoned river channel with open water and aquatic plants; (ii) inundated forest swamp; and (iii) raised peat dome (since ca. 3.9 ka BP). Local burning occurred at least three times in the past 4,500 years. Two phases of particularly rapid C accumulation (ca. 6.6–6.1 and ca. 4.9–3.9 ka BP), potentially resulting from increased net primary productivity, were seemingly driven by drier conditions associated with widespread drought events. The association of drought phases with major ecosystem state shifts (open water wetland–forest swamp–peat dome) suggests a potential climatic control on the developmental trajectory of this tropical peatland. A third drought phase centred on ca. 1.8–1.1 ka BP led to markedly reduced C accumulation and potentially a hiatus during the peat dome stage. Our results suggest that future droughts may lead to phases of rapid C accumulation in some inundated tropical peat swamps, although this can lead ultimately to a shift to ombrotrophy and a subsequent return to slower C accumulation. Conversely, in ombrotrophic peat domes, droughts may lead to reduced C accumulation or even net loss of peat. Increased surface wetness at our site in recent decades may reflect a shift towards a wetter climate in western Amazonia. Amazonian peatlands represent important carbon stores and habitats, and are important archives of past climatic and ecological information. They should form key foci for conservation efforts.     

Aquatic ecosystems of the Yucatán Peninsula (Mexico), Belize, and Guatemala

This study presents limnological and morphological characteristics, physical and chemical properties of waters, and geochemistry of surface sediments for 63 aquatic ecosystems located on the karst Yucatán Peninsula and surrounding areas of Belize and the Guatemalan highlands and eastern lowlands. Our principal goal was to classify the aquatic systems based on their water variables. A principal component analysis (PCA) of the surface water chemistry data showed that a large fraction of the variance (29%) in water chemistry is explained by conductivity and major ion concentrations. The broad conductivity range, from 168 to 55,300 μS cm⁻¹ reflects saline water intrusion affecting coastal aquatic environments, and the steep NW–S precipitation gradient, from ~450 to >3,200 mm year⁻¹. Coastal waterbodies Celestún and Laguna Rosada displayed the highest conductivities. Minimum surface water temperatures of 21.6°C were measured in highland lakes, and warmest temperatures, up to 31.7°C, were recorded in the lowland waterbodies. Most lakes showed thermal stratification during the sampling period, with the exception of some shallow (<10 m) systems. Lakes Chichancanab, Milagros, and Bacalar displayed sulfate-rich waters. Waters of sinkholes had relatively high conductivities (<3,670 μS cm⁻¹) and a broad range of δ¹⁸O values (−4.1 to +3.8‰). Ca, HCO₃, and SO₄ dominated the waters of the lowland lakes, whereas Na was the dominant cation in highland lakes. Coastal aquatic ecosystems were dominated by Na and Cl. Cluster analysis based on surface water variables classified aquatic environments of the lowlands and highlands into three groups: (1) lowland lakes, ponds, wetlands, and coastal waterbodies (2) highland lakes, and (3) sinkholes and rivers. A broad trophic state gradient was recorded, ranging from the eutrophic Lake Amatitlán and the Timul sinkhole to oligotrophic Laguna Ayarza, with the highest water transparency (11.4 m). We used major and trace elements in surface sediments to assess pollution of waterbodies. Lakes Amatitlán, Atescatempa, El Rosario, Cayucón, Chacan-Lara, La Misteriosa, rivers Subín and Río Dulce, the wetland Jamolún, and the sinkhole Petén de Monos showed evidence of pollution and urban development. Their surface sediments displayed high concentrations of As, Cu, Fe, Ni, Pb, Se, Zn, and Zr, which suggest moderate to strong pollution.