A revision of Japanese species of the genus Psammoecus Latreille (Coleoptera,Silvanidae)

Japanese species of the genus Psammoecus Latreille, 1829 are taxonomically revised. Four new species, P. scitus sp. n. (misidentified with P. quadrimaculatus), P. labyrinthicus sp. n., P. boreas sp. n. and P. omotoensis sp. n. are described. Psammoecus bipunctatus (Fabricius, 1792), P. trimaculatus Motschulsky, 1858 (misidentified with P. triguttatus), P. simoni Grouvelle, 1892, P. fasciatus Reitter, 1874 and P. triguttatus are redescribed. Another described species whose distribution in Japan is questionable. P. quadrimaculatus is also redescribed. Lectotype and paralectotype of P. fasciatus and P. triguttatus are designated.     

On the distribution and synonymy of some indo-malayan species of the chrysomelid genus Pagria Lefèvre, 1884 (Coleoptera, Chrysomelidae: Eumolpinae)

Pagria pseudograta sp. n. from Sri Lanka is described. Pagria flavopustulata and all its synonyms (Nodostoma kanaraense Jac., P. flavopustulata ab. bicolor Wse., P. signata grandis Chûjô, P. signata var. innotata Pic, and P. nodieri Pic) are placed to synonyms of P. grata Baly. Also, Nodostoma fulvipes Baly with the replacement name N. xanthopus Har., P. vignaphila Bry., and P. aeneicollis Lef. are synonymized with this species. Pagria bipunctata Lef. is placed to synonymy with P. signata (Motsch.). Nodostoma concolor Motsch. is transferred to the genus Pagria. Pagria laevifrons Jac., P. aenescens Jac. and P. recticollis Pic are transferred to the genus Cleoporus Lef. Pagria pallidicolor Pic is transferred to the genus Basilepta Baly. The drawings of the aedeagi of P. pseudograta sp. n. and P. ceylonica Pic are given. The distribution of a number of species is clarified.     

Taxonomic Notes on Four Species of Panagrellus Thorne (Nematoda: Cephalobidae)

Four populations of Panagrellus redivivus (Linnaeus, 1767) Goodey, 1945, and syntypes of P. dubius Sanwal, 1960, P. redivivoides (Goodey, 1943) Goodey, 1945, P. pycnus Thorne, 1938, P. zymosiphilus (Brunold, 1950) Brunold, 1954, and P. leucocephalus Steiner, 1936 were examined. Additional information on the morphology of spicules and stoma is presented. P. zymosiphilus is synonymized with P. redivivoides and Rühm''s synonymization of P. silusiae and P. leucocephalus with P. redivivus is supported. Lectolypes for P. pycnus and P. redivivoides are designated.     

On Plagiochila section Cobanae Carl in Asia and melanesia

Section Cobanae Carl of the genus Plagiochila is characterized. Several Asian and Melanesian species are included in the section: Plagiochila bicornuta Steph., P. detecta So & Grolle, P. singularis Schiffn., P. tagawae Inoue, P. tixierí Inoue, P. trabeculata Steph. and P. zhuensis Grolle & So. Plagiochila laxissima Schiffn. is placed under the synonymy of P. bicornuta Steph.     

The coumarins of Philotheca sensu lato: distribution and systematic significance

Five coumarins and two flavonoid glycosides are reported from Philotheca pinoides of which one, 3-(3-hydroxy-3-methylbut-1-enyl)-7,8-dimethoxycoumarin, appears to be novel. HPLC analysis of extracts of a number of other Philotheca species revealed that 5,7-dioxygenated-6,8-prenylated coumarins were present in P. apiculata, P. coccinea, P. deserti, P. pachyphylla, P. rhomboidea, P. thryptomenoides and P. gardneri, but not in P. nodiflora, P. pinoides, P. sericea, P. spicata, P. tomentella or P. woganensis. An analysis of the distribution of coumarins demonstrate that Geleznowia verrucosa is chemically indistinguishable from many species of Philotheca section Philotheca, whereas Philotheca section Erionema is more variable. Typical avicennol type coumarins have been found in the Boronieae only in Philotheca section Philotheca, in Geleznowia and in one species of Asterolasia. Coumarins that characterise Philotheca section Philotheca are not currently known from Eriostemon s.s., and sympatric genera such as Phebalium and Drummondita.     

Una nueva especie de Pachynolophus (Mammalia, Perissodactyla) de Zambrana (Álava, Región Vasco-Cantábrica). Análisis filogenético de Pachynolophus y primera cita en el Eoceno superior de la Península Ibérica

Recent fieldwork in the Late Eocene of Zambrana (Álava, Basque-Cantabrian Region) has yielded a new species of Pachynolophus: P. zambranensis nov. sp. According to the phylogenetic analysis made in this study, the Zambrana species is part of the monophyletic Pachynolophus, which is defined at least by three synapomorphies: significant progressive increase of the size in the M1/1-M3/3 series, being M3/3 outstandingly bigger than M2/2; moderate increase of the relative surface of M3/ with respect to M2/ surface, and weak labial cingula in the lower series. Pachynolophus includes the species P. duvali, P. livinierensis, P. garimondi, P. lavocati, P. zambranensis, P. boixedatensis and P. cesserasicus. P. molipotensis and P. cayluxi are not represented by sufficient material to attribute them to Pachynolophus. P. bretovensis does not share a synapomorphy of Pachynolophus and P. hookeri should not be referred to this genus. P. zambranensis shares several synapomorphies with P. garimondi and P. lavocati, which are: the posprotocrista of the P3-4/ series is a well-defined lophe; the P4/ has a subquadrangular outline and shows a strong posterolingual cingulum, forming a posterior widening; and there is an “incipient mesostyle” (pseudomesostyle?) in the upper molars. The species P. zambranensis is mainly characterized by lophodont dentition, with the postprotocrista obliquely oriented to the ectoloph in the P3-4/ series, and a “pseudomesostyle” also present in the P3-4/ series. It represents the first mention of the genus Pachynolophus described in the Late Eocene of the Iberian Peninsula.     

Genetic relationships among Pistacia species studied by SAMPL markers

Pistachio is economically important in Iran. Selection of suitable rootstocks, resistant to unfavorable and soil conditions and diseases, is important for increasing yield and the acreage of this crop. It is essential to identify the genetic relationships among Pistacia species for the breeding of pistachio rootstocks. The goal of this study was to determine the genetic relationship among Pistacia species (P. vera L., P. khinjuk Stocks., P. eurycarpa Yalt., P. atlantica subsp. atlantica Zoh., P. atlantica subsp. mutica Fish et C.A. Mey and P. atlantica subsp. cabulica Stocks.) with potential in the breeding of rootstocks using the selective amplification of microsatellite polymorphic loci (SAMPL) technique. Six primer combinations produced a total of 182 bands, with an average of 30.33 bands per primer pair, of which 128 were polymorphic. Three branches were obtained, the first containing P. vera, and the second containing P. khinjuk, P. eurycarpa, P. atlantica and subspecies mutica and cabulica, with numerous leaflets clustered in the third branch. UPGMA analysis separated P. atlantica subspecies from P. eurycarpa.     

Studies on Plagiochila in Asia,supplements to sections Abietinae,Annotinae, Ciliatae,Contiguae, Cucullatae,Poeltiae, Subtropicae and zonatae

Twenty-seven names are newly placed in synonymy, Plagiochila blepharophora (Nees) Lindenb. var. δ major Schiffn. (= P. sandei Dozy), P.boninensis Inoue (= P. fordiana Steph.), P. cadens Inoue (= P. sciophila Nees), P. cameronensis Inoue (= P. hampeana Gottsche), P. ceramica Inoue (= P. pulvinata Steph.), P. decidua Inoue & Grolle (= P. sciophila Nees), P. didyma Inoue (= P. parvifolia Lindenb.), P. euryphyllon Herzog (= P. sciophila Nees), P. flavovirens Steph. (= P. sciophila Nees), P. fraseri Steph. (= P. teysmannii Sande Lac), P. gedeana Schiffn. (= P. hampeana Gottsche), P. kaernbachii Steph. (= P. sandei Dozy), P. lagunensis Inoue (= P. junghuhniana Sande Lac), P. massalongoana Sande Lac. (= P. junghuhniana Sande Lac), P. minor Horik. (= P. fordiana Steph.), P. nilgherriensis Steph. (= P. semidecurrens (Lehm. & Lindenb.) Lindenb.), P. nubila Steph. (= P. sandei Dozy), P. nymanii Steph. (= P. sandei Dozy), P. orientalis Taylor (= P. sciophila Nees), P. seemannii Mitt. (= P. sandei Dozy), P. sepikensis Inoue (= P. inflata Steph.), P. spinosissima Steph. (= P. semidecurrens (Lehm. & Lindenb.) Lindenb.), P. subplanata Inoue (= P. sciophila Nees), P. trabeculata var. bifida S. Hatt. (= P. fordiana Steph.), P. trochantha Steph. (= P. sciophila Nees), P. tsutomui Inoue (= P. ungarangana Sande Lac), and P. wichurae Steph. (= P. renitens (Nees) Lindenb). Lectotypes are designated for P. junghuhniana, P. semidecurrens, and P. ungarangana. Plagiochila inflata Steph. is reinstated as a species of sect. Annotinae Carl.     

A combined morphometric and AFLP based diversity study challenges the taxonomy of the European members of the complex Prunus L. section Prunus

Multivariate analysis of both endocarp and leaf morphometrics is combined with cluster analysis and Bayesian inference of AFLP markers to assess the morphologic and genetic variation of five European members of Prunus section Prunus (P. cerasifera, P. domestica, P. insititia, P. spinosa, and P. × fruticans). Endocarp morphometrics separate most Prunus taxa studied, but overlap remains between P. domestica and P. cerasifera, and P. spinosa and P. × fruticans. Leaf morphometrics yield better separation of P. domestica and P. cerasifera, but do not allow distinction between P. spinosa and P. × fruticans. Both cluster analysis and PCoA of AFLP markers equally produce three distinct clusters. A first consists of all P. cerasifera samples and the sole P. cocomilia; a second cluster includes all individuals of P. domestica and P. insititia; and a third group comprises all P. spinosa and P. × fruticans samples.     

Early Permian radiolarians from Southern Thailand,the deglaciation of Gondwana and the age of the basal Ratburi Group

The first radiolarian fauna obtained from Permian carbonates in Thailand is of late Kungurian age and is present in the basal beds of the carbonate–mudstone–chert Phap Pha Formation, Ratburi Group. This succession contains several species of the radiolarian Pseudoalbaillella, and some sponge spicules. The radiolarian fauna consists of abundant Pseudoalbaillella aidensis and P. elegans together with P. fusiformis, P. longtanensis, P. m. rhombothoracata and P. sp. A. Other species include P. cf. aidensis, P. cf. elongata, P. cf. fusiformis, P. cf. ishigai, P. cf. lomentaria, P. cf. longicornis, P. cf. longtanensis, P. cf. ornata, P. cf. simplex, P. cf. m. scalprata, P. cf. m. postscalprata, P. cf. u–forma m. I, P. cf. u–forma m. II, and P. spp. The radiolarian assemblage suggests its correlation to the P. longtanensis Zone which, in turn, is correlated to the P. ishigai Zone of late Kungurian age. The occurrence of an abundant but generically low–diversity radiolarian fauna suggests restricted physical conditions and, with other evidence, suggests deposition along a cool deglaciating or deglaciated continental margin with an abundance of silica possibly provided by glacial meltwaters. The abundant chert in the Phap Pha Formation is part of the widespread Permian Chert Event.     

Domoic acid production by Pseudo-nitzschia australis and Pseudo-nitzschia calliantha isolated from North Chile

The morphology and toxicity of the four ubiquitous species belonging to the genus Pseudo-nitzschia found in mixed blooms of phytoplankton from northern Chilean waters were studied. The phytoplankton samples and cultures obtained were identified by scanning electron microscopy, revealing the presence of Pseudo-nitzschia australis, P. calliantha, P. pseudodelicatissima and P. subfraudulenta. This is the first report of P. calliantha in northern Chile. Toxin analyses using the LC–MS method confirmed the presence of domoic acid in P. australis and P. calliantha. Domoic acid was not detected in cultures of P. subfraudulenta. This study therefore confirms P. australis and P. calliantha as an unequivocal source of domoic acid in Chilean waters. P. australis is probably the most important producer of amnesic shellfish toxin in view of its domoic acid content. However, more research is needed to evaluate the potential for toxin production in P. pseudodelicatissima.     

The taxonomy and diversity of Platerodrilus (Coleoptera,Lycidae) inferred from molecular data and morphology of adults and larvae

The Oriental neotenic net-winged beetles attracted attention of biologists due to conspicuous large-bodied females; nevertheless phylogenetic relationships remain contentious and only a few species are known in both the fully metamorphosed males and neotenic females. The phylogenetic analyses and morphology of larvae and adults provide data for investigation of relationships and species delineation. Platrilus Kazantsev, 2009, Platerodriloplesius Wittmer, 1944, and Falsocalochromus Pic, 1942 are synonymized to Platerodrilus Pic, 1921. Platrilus hirtus (Wittmer, 1938) and Pl. crassicornis (Pic, 1923) are transferred to Platerodrilus Pic, 1921. Platerodrilus hoiseni Wong, 1996 is proposed as a junior subjective synonym of Falsocalochromus ruficollis Pic, 1942. Platerodrilus is divided in three species-groups: P. paradoxus, P. major, and P. sinuatus groups defined based on the shape of genitalia and molecular phylogeny. The following species are described: Platerodrilus foliaceus sp. n., P. wongi sp. n. (P. paradoxus group); P. ngi sp. n., P. wittmeri (P. major group), P. ijenensis sp. n., P. luteus sp. n., P. maninjauensis sp. n., P. montanus sp. n., P. palawanensis sp. n., P. ranauensis sp. n., P. sibayakensis sp. n., P. sinabungensis sp. n., P. talamauensis sp. n., and P. tujuhensis sp. n. (P. sinuatus group). P. korinchiana robinsoni Blair, 1928 is elevated to the species rank as P. robinsoni Blair, 1928, stat. n. The conspecific semaphoronts are identified using molecular phylogeny for P. foliaceus sp. n., P. tujuhensis sp. n., P. montanus sp. n., P. maninjauensis sp. n.; additional female larvae are assigned to the species-groups. Diagnostic characters are illustrated and keys are provided for P. paradoxus and P. major groups.     

Species composition and toxicity of the genus Pseudo-nitzschia in Taiwan Strait,including P. chiniana sp. nov. and P. qiana sp. nov.

In a field survey in the Taiwan Strait during April 2016, the species composition and the domoic acid production of the diatom genus Pseudo-nitzschia were investigated. A total of 80 strains of Pseudo-nitzschia were established, and species identification was determined based on a combination of morphological and molecular data. Fourteen taxa were recognized, i.e., P. americana, P. brasiliana, P. calliantha, P. cuspidata, P. galaxiae, P. lundholmiae, P. multiseries, P. multistriata, P. pseudodelicatissima, P. pungens var. aveirensis, P. pungenus var. pungens and P. sabit, as well as two novel species P. chiniana C.X. Huang & Yang Li and P. qiana C.X. Huang & Yang Li. Morphologically, P. chiniana is characterized by striae comprising one or two rows of poroids, and valve ends that are normally dominated by two rows of poroids within each stria. Whereas P. qiana is unique by having a narrow valve width (1.3–1.5 μm) and sharply pointed valve ends. Both taxa constitute their own monophyletic lineage in the phylogenetic analyses inferred from LSU and ITS2 rDNA, and are well differentiated from other Pseudo-nitzschia species. Pseudo-nitzschia chiniana forms a group with P. abrensis and P. batesiana in LSU and ITS trees, whereas P. qiana is sister to P. lineola. When comparing ITS2 secondary structure, five CBCs and seven HCBCs are recognized between P. chiniana and P. abrensis, and four CBCs and ten HCBCs between P. chiniana and P. batesiana. Two CBCs and eight HCBCs are found between P. qiana with P. lineola. The ability of the strains to produce domoic acid was assessed, including a potential toxin induction by the presence of brine shrimps. Results revealed production of domoic acid in six strains belonging to three species. Without presence of brine shrimps, cellular DA (pDA) was detected in four P. multiseries strains (1.6 ± 0.3, 26.6 ± 2.7, 68.3 ± 4.2 and 56.9 ± 4.7 fg cell⁻¹, separately), one strain of P. pseudodelicatissima (0.8 ± 0.2 fg cell⁻¹) and one strain of P. lundholmiae (2.5 ± 0.4 fg cell⁻¹). In the presence of brine shrimps, pDA contents increased significantly (p < 0.05) in P. lundholmiae (strain MC4218) and P. multiseries (strain MC4177), from 2.5 ± 0.4 to 8.9 ± 0.7 and 1.6 ± 0.3 to 37.2 ± 2.5 fg cell⁻¹ respectively.     

Pollen morphology of alpine butterworts (Pinguicula L., Lentibulariaceae)

The pollen morphology of Pinguicula alpina, P. arvetii, P. grandiflora subsp. grandiflora, P. grandiflora subsp. rosea, P. hirtiflora, P. leptoceras, P. poldinii, P. reichenbachiana, and P. vulgaris, belonging to the Alpine flora, was studied.The pollen grains, coming from different populations, were investigated using light microscopy and scanning electron microscopy. The pollen size, the shape (P/E ratio), the number of colpori and the exine ornamentation are, for Pinguicula, important diagnostic characters.Pinguicula pollen grains are medium sized (∼ 30 μm), trinucleate, isopolar, radially symmetric. The shape of the grains is variable from oblate spheroidal to prolate spheroidal and they are (4)-5-9-(10)-zonocolporate. The prevalent ornamentation is rugulate-microreticulate, P. alpina has a rugulate-reticulate ornamentation and only P. hirtiflora has a perforate ornamentation.A pollen key, based on micromorphological data, is presented.     

Synonymy of soil-feeding termites Pseudocapritermes sowerbyi and Pseudocapritermes largus,with evidence from morphology and genetics

Pseudocapritermes Kemner is a termite group that constructs subterranean gallery systems in topsoil. This genus is distributed in the Oriental region and contains 18 species. Dependence on the morphological measurements of soldiers makes the taxonomy of Pseudocapritermes difficult. In this study, we compared morphological characters of soldiers and adults of P. largus and P. sowerbyi. In addition, three fulllength mitochondrial genes (COI, COII, and 16S rRNA) were sequenced from a total of eight P. largus and P. sowerbyi colonies. Morphological comparison of soldiers showed that P. largus is larger than P. sowerbyi, but there was overlap in some measurements. In adults, the morphological characters of P. largus were congruent with those of P. sowerbyi. Sequence alignments of COI, COII, and 16S rRNA revealed a high pairwise genetic identity (ranging from 99.64 to 100%) between the two species, which suggested that P. largus and P. sowerbyi are the same species. Molecular phylogenetic analysis based on COII revealed that Pseudocapritermes belongs to the Termes group having soldiers with asymmetrical snapping mandibles and is more closely related to Sinocapritermes than to other Termes group genera distributed in China. Morphological similarity and genetic identity indicate that P. largus is a junior synonym of P. sowerbyi.     

Pungentus porosus n.sp. (Nematoda:Dorylaimoidea) from Canada with a Key to the Species of Pungentus

Pungentus porosus n. sp. is described and illustrated. The differential characters are a short odontostyle of 6-8 μm or slightly less than one head width, vulva at 44-50%, goblet-shaped amphids, presence of a prevulval uterine sac, and a hemispherical tail with a variable number of pores. Pungenlus sublatum, P. vesiculosus, P. orthocephalus, P. granosus, and P. parvus sensu Eroshenko are considered to be incertae sedis. A key is provided to the 21 valid species of Pungentus. The following species are new Canadian records: P. angulosus, P. clavatus, P. engradinensis, P. marietani, P. microdentatus, P. monohystera, P. obscurus, P. parvus, P. pungens and P. silvestris.     

Crystal structure of Trypanosoma cruzi heme peroxidase and characterization of its substrate specificity and compound I intermediate

The protozoan parasite Trypanosoma cruzi is the causative agent of American trypanosomiasis, otherwise known as Chagas disease. To survive in the host, the T. cruzi parasite needs antioxidant defense systems. One of these is a hybrid heme peroxidase, the T. cruzi ascorbate peroxidase-cytochrome c peroxidase enzyme (TcAPx-CcP). TcAPx-CcP has high sequence identity to members of the class I peroxidase family, notably ascorbate peroxidase (APX) and cytochrome c peroxidase (CcP), as well as a mitochondrial peroxidase from Leishmania major (LmP). The aim of this work was to solve the structure and examine the reactivity of the TcAPx-CcP enzyme. Low temperature electron paramagnetic resonance spectra support the formation of an exchange-coupled [Fe(IV)=O Trp₂₃₃^•+] compound I radical species, analogous to that used in CcP and LmP. We demonstrate that TcAPx-CcP is similar in overall structure to APX and CcP, but there are differences in the substrate-binding regions. Furthermore, the electron transfer pathway from cytochrome c to the heme in CcP and LmP is preserved in the TcAPx-CcP structure. Integration of steady state kinetic experiments, molecular dynamic simulations, and bioinformatic analyses indicates that TcAPx-CcP preferentially oxidizes cytochrome c but is still competent for oxidization of ascorbate. The results reveal that TcAPx-CcP is a credible cytochrome c peroxidase, which can also bind and use ascorbate in host cells, where concentrations are in the millimolar range. Thus, kinetically and functionally TcAPx-CcP can be considered a hybrid peroxidase.     

Influence of Temperature on Population Development of Eight Species of Pratylenchus on Soybean

In a soil temperature study, population increase on ''Clark 63'' soybeatt was most rapid at 30 C in Pratylenchus alleni, P. brachyurus, P. cofleae, P. neglectus, P. scribneri, and P. zeae and at 25 C in P. penetrans and P. vulnus. The last two were the only species that reproduced at 15 C. Populations of all species increased over the range of 20-30 C, except those of P. neglectus at 20 C and P. coffeae, which was not tested below 25 C. Only P. brachyurus, P. neglectus, P. scribneri and P. zeae reproduced at 35 C. At their optimum temperatures, P. scribneri exhibited the greatest population increase, 1248-fold, and P. penetrans the least, 32-fold. This is the first report of soybean as a host for P. vulnus.     

Review of genus Pseudorthocladius Goetghebuer, 1943 (Diptera,Chironomidae) from China

The genus Pseudorthocladius Goetghebuer, 1943 from China, including 12 species, is reviewed. Five new species, P. (P.) binarius sp. n., P. (P.) cylindratus sp. n., P. (P.) digitus sp. n., P. (P.) ovatus sp. n. and P. (P.) paucus sp. n. are described and illustrated as adult males. P. (P.) cristagus Stur & Sæther, 2004, P. (P.) jintutridecima (Sasa, 1996), P. (P.) macrovirgatus Sæther & Sublette, 1983, P. (P.) morsei Sæther & Sublette, 1983, P. (P.) uniserratus Sæther & Sublette, 1983, P. (L.) wingoi Sæther & Sublette, 1983 are newly recorded in Oriental Region. A key to the males of Pseudorthocladius in China is presented.