A RAPD Assay for Strain Typing of the Biotrophic Grape Powdery Mildew Fungus Uncinula necator Using DNA Extracted from the Mycelium

Délye, C., Corio-Costet, M.-F., and Laigret, F. 1995. A RAPD assay for strain typing of the biotrophic grape powdery mildew fungus Uncinula necator using DNA extracted from the mycelium. Experimental Mycology 19, 234-237. We describe, for the first time, a RAPD assay using DNA extracted from the mycelium of a powdery mildew fungus, Uncinula necator, a pathogen of grape. No contamination by plant DNA was observed, and the resulting patterns were fully repetitive. RAPD profiles were unchanged when using two different DNA polymerases or three different thermocyclers. Thirteen strains were tested for amplification, using 95 primers. Only 4% of the amplified fragments were polymorphic. Cluster analysis revealed that the strains from the same geographical origin had the higher genetic similarity, suggesting a short-range dissemination of U. necator. This RAPD assay was also successfully applied to the grape downy mildew fungus, Plasmopara viticola, indicating that it can be used for other fungi which cannot be grown on artificial media.     

Detection of a Specific Transposon in Erysiphe necator from Grapevines in France

The biotrophic fungus, Erysiphe necator the causal agent of the grape powdery mildew, has two genetic groups A and B in European and Australian vineyards. A strain of group A was used to isolate a DNA sequence that exhibits high sequence homology to RNaseH of a non‐LTR (long tandem repeat) retrotransposon of Glomerella cingulata. PCR primers were designed and tested for their specificity to genetic group A of E. necator. This molecular tool is more efficient and sensitive than nested PCR based on polymorphism in the CYP₅₁ and β‐tubulin genes.     

西洋参白粉病病原鉴定

近年在吉林省栽培的西洋参上发现自粉病,经致病性测定和对病原菌种的鉴定,结果表明：该病害是由人参白粉菌（Erysiph panacis Baiet Liu）所致。     

青岛地区茄白粉病的病原菌鉴定

在青岛地区的保护地和露地发现茄白粉病,通过形态学和分子生物学进行鉴定以及致病性测定。结果将青岛地区茄白粉病的病原鉴定为Podosphaera xanthii,本文为该菌在我国茄子上的首次报道。     

Isolation of RNA and Protein from Guard Cells of Nicotiana glauca

Stomatal guard cells are critical for maintenance of plant homeostasis and represent an interesting cell type for studies of leaf cell differentiation and patterning. Here we describe techniques for the isolation of guard cell RNA and protein from blended epidermal peels of Nicotiana glauca. The RNA isolation procedure is a modification of the hot borate method, which is particularly well-suited for recalcitrant tissues. Protein was extracted by disrupting guard cell-enriched epidermis with a French® press. This system offers the following advantages: relatively high yield, low or no contamination by other cell types, fresh tissue as a source of RNA and protein rather than protoplasts, and a plant species that is readily transformable. These techniques will allow for cloning and analysis of genes expressed in guard cells, application of traditional biochemical techniques to guard cell proteins, as well as characterization of genetic manipulation of guard cell function in transgenic plants.     

The Effects of Temperature on the Incubation and Latent Periods of Powdery Mildew (Erysiphe polygoni) on Clematis

The effects of temperature on the length of the incubation and latent periods of clematis powdery mildew, caused by Erysiphe polygoni , were studied. At constant temperatures over the range of 10–29°C, the length of the incubation period ranged from 4 to 11 days, and the length of the latent period ranged from 4 to 13 days; no visible colonies developed at 30°C after 19 days. The relationship between temperature and the rates of fungal development within the incubation and latent periods (expressed as the reciprocal of the lengths of the incubation and latent periods) under constant temperature were described well by a non-linear model. The resulting curves were not the usual form of an asymmetrically bell-shaped type; instead, they were of exponential type with the development rate increasing with increasing temperatures. The relationship between temperature and the development rate during the post-incubation (before sporulation) period was non-linear with an optimum temperature of approximately 20°C.     

RNA Isolation from Cell Specific Subpopulations Using Laser-capture Microdissection Combined with Rapid Immunolabeling

Laser capture microdissection (LCM) allows the isolation of specific cells from thin tissue sections with high spatial resolution. Effective LCM requires precise identification of cells subpopulations from a heterogeneous tissue. Identification of cells of interest for LCM is usually based on morphological criteria or on fluorescent protein reporters. The combination of LCM and rapid immunolabeling offers an alternative and efficient means to visualize specific cell types and to isolate them from surrounding tissue. High-quality RNA can then be extracted from a pure cell population and further processed for downstream applications, including RNA-sequencing, microarray or qRT-PCR. This approach has been previously performed and briefly described in few publications. The goal of this article is to illustrate how to perform rapid immunolabeling of a cell population while keeping RNA integrity, and how to isolate these specific cells using LCM. Herein, we illustrated this multi-step procedure by immunolabeling and capturing dopaminergic cells in brain tissue from one-day-old mice. We highlight key critical steps that deserve special consideration. This protocol can be adapted to a variety of tissues and cells of interest. Researchers from different fields will likely benefit from the demonstration of this approach.     

Development of an Efficient Protocol of RNA Isolation from Recalcitrant Tree Tissues

Isolation of RNA from recalcitrant tree tissues has been problematic due to large amounts of secondary metabolites and interfering compounds in their cells. We have developed an efficient RNA extraction method, which yielded high-quality RNA preparations from tissues of the lychee tree. The method reported here utilized EDTA, LSS, and CTAB to successfully inhibit RNase activities. It was found that a high ionic strength brought about by 2 M NaCl was necessary. In addition, secondary metabolites and other interfering compounds were effectively removed using sodium borate and PVPP under a deoxidized condition. The quality of purified RNA was tested by both RACE and Northern blotting analysis, ensuring that the RNA could be used for subsequent gene expression analysis. This method has been successfully applied to purify RNA from 15 other plant species. In conclusion, the protocol reported here is expected to have excellent applications for RNA isolation from recalcitrant plant tissues.     

Modified CTAB Procedure for DNA Isolation from Epiphytic Cacti of the Genera Hylocereus and Selenicereus (Cactaceae)

We present a simple protocol for DNA isolation from climbing cacti, genera Hylocereus and Selenicereus. The abundant polysaccharides present in Hylocereus and Selenicereus species interfere with DNA isolation, and DNA extracts, rich in polysaccharides, are poor templates for amplification using polymerase chain reaction (PCR). We used roots as the source tissue due to the lower viscosity of the extracts relative to that of other tissues. The extraction and isolation procedure we devised consists of the following steps: (1) three washes of ground tissue with the extraction buffer to remove the polysaccharides; (2) extraction with high-salt (4 M NaCl) cetyltrimethylammonium bromide (CTAB) buffer to remove the remaining polysaccharides; (3) removal of RNA by RNase; (4) phenol:chloroform extraction to remove proteins; (5) chloroform extraction to remove remaining phenols. The yields ranged from 10 to 20 g DNA/g fresh roots. DNA samples prepared by our method were consistently amplifiable in the RAPD reaction and gave reproducible profiles.     

一种从苏铁叶片中有效提取RNA的方法

由于苏铁（ Cycas revoluta） 叶片中含有大量的多糖多酚等次生代谢物, 常规RNA 提取方法很难获得优质的RNA。在常规的CTAB 法中加入了硼砂和β- 巯基乙醇来消除多酚和多糖的干扰, 得到了一个从苏铁叶片中有效提取RNA 的方法, 每克鲜叶片可获得约930μg RNA。A260 280 和A260 230 的纳米波长的吸收比值都约为2 , 表明RNA 的质量较好。获得的RNA 可用于Northern blot 和反转录PCR 等分析, 也说明RNA 的质量比较好。此外, 改进的提取方法也适合于含有次生代谢产物的其它植物, 同样可以获得优质RNA。     

大麦与白粉病菌互作中钙调素的细胞化学定位

对不同抗病性的大麦近等基因系受白粉病菌侵染诱导后的钙调素(CaM)变化进行了免疫细胞化学研究。结果表明,钙调素普遍存在于各种不同类型的细胞中,代谢活跃的细胞中CaM标记密度相对较高;CaM分布于细胞核、细胞壁、叶绿体等细胞器中,其中细胞核标记密度最高。在健康叶片中,感病品系Ingrid伴胞中CaM的标记密度明显高于抗病品系mlo—3,而其他细胞中CaM标记密度没有明显差别。病原菌接种后,各种细胞的CaM标记密度均呈现一定程度的上升,但Ingrid上升幅度相对较大。在叶肉细胞中,mlo-3细胞核中CaM增加最明显。并对叶肉细胞和伴胞中CaM的变化进行了讨论。     

Isolation of lipids from biological samples

Abstract

Isolation of the lipid fraction from biological samples has been a crucial part of countless studies over the last century. This considerable research interest has led to the development of a number of methods for isolating a range of molecular species that fall under the umbrella term “lipid”. Such methods vary in popularity, complexity, specificity and even toxicity. In this review, we explore examples of published methods (1952–2014) for isolating lipids from biological samples and attempt to assess the limits of techniques both from a chemical and biological perspective. We also suggest how a suitable method might be chosen for a novel application.     

琯溪蜜柚汁胞RNA提取方法的比较

比较了3种从琯溪蜜柚汁胞中提取RNA的方法,通过琼脂糖凝胶电泳及紫外分光光度计检测,对提取所得RNA的完整性、纯度及浓度进行分析。试验结果表明,Trizol法适合琯溪蜜柚汁胞RNA的提取,能有效获得纯度高、完整性好的RNA样品,而且Trizol法步骤简单,RNA得率与质量均较高。通过RT-PCR检验表明该RNA适于后续分子生物学操作。     

银杏不同组织的总RNA提取方法的改进

方法:采用改进的CTAB法高效地从富含多糖、多酚类化合物的银杏的根、茎、叶和果实四个组织中提取RNA。结果:抽提的不同组织的RNA经电泳检测,可见28S和18S两条清晰的主带,且28S rRNA在亮度上均为18S rRNA的2倍,两条带之间无弥散现象;根、茎、叶、果所提的RNA的经紫外吸收检测得到A260/A230分别为1.9、1.4、2.1、1.7,测得A260/A280分别为1.8、2.0、2.3、1.8,鲜重分别达到78μg/g、69μg/g、150μg/g、90μg/g;通过RT-PCR及凝胶检测,得到了银杏看家基因18S基因的约150bp清晰的条带,从而进一步检测提取RNA的质量。结论:提取的总RNA纯度高,质量好,足以为研究提供RNA材料。     

仿刺参体壁总RNA提取方法的建立

目的:通过对TRIzol一步法进行改进,建立一种从富含胶原蛋白、多糖及色素的仿刺参体壁提取总RNA的有效方法。方法:样品在液氮中研磨并用TRIzol匀浆后再进行抽提;对TRIzol一步法提取的总RNA进行DNaseⅠ消化和酚氯仿抽提,用2.5mol/L的醋酸钾沉淀,并加入适量糖原(10mg/mL)与RNA共沉淀。结果:琼脂糖凝胶电泳和紫外分光光度法以及RT-PCR检测结果表明,改进的方法能够有效去除基因组DNA、蛋白、多糖及色素的污染,RNA的产率提高。结论:制备的总RNA纯度高,完整性好,能够满足mRNA差异显示RT-PCR等分子生物学研究的要求,是一种提取仿刺参体壁及其他富含黏多糖、胶原蛋白和色素的动物组织总RNA的有效方法。     

Grapevine powdery mildew (Erysiphe necator): a fascinating system for the study of the biology, ecology and epidemiology of an obligate biotroph

Few plant pathogens have had a more profound effect on the evolution of disease management than Erysiphe necator, which causes grapevine powdery mildew. When the pathogen first spread from North America to England in 1845, and onwards to France in 1847, 'germ theory' was neither understood among the general populace nor even generally accepted within the scientific community. Louis Pasteur had only recently reported the microbial nature of fermentation, and it would be another 30 years before Robert Koch would publish his proofs of the microbial nature of certain animal diseases. However, within 6 years after the arrival of the pathogen, nearly 6 million grape growers in France were routinely applying sulphur to suppress powdery mildew on nearly 2.5 million hectares of vineyards (Campbell, 2006). The pathogen has remained a focus for disease management efforts ever since. Because of the worldwide importance of the crop and its susceptibility to the disease, and because conventional management with modern, organic fungicides has been compromised on several occasions since 1980 by the evolution of fungicide resistance, there has also been a renewed effort worldwide to explore the pathogen's biology and ecology, its genetics and molecular interactions with host plants, and to refine current and suggest new management strategies. These latter aspects are the subject of our review. Taxonomy: The most widely accepted classification follows. Family Erysiphaceae, Erysiphe necator Schw. [syn. Uncinula necator (Schw.) Burr., E. tuckeri Berk., U. americana Howe and U. spiralis Berk. & Curt; anamorph Oidium tuckeri Berk.]. Erysiphe necator var. ampelopsidis was found on Parthenocissus spp. in North America according to Braun (1987), although later studies revealed isolates whose host range spanned genera, making the application of this taxon somewhat imprecise (Gadoury and Pearson, 1991). The classification of the genera before 1980 was based on features of the mature ascocarp: (i) numbers of asci; and (ii) morphology of the appendages, in particular the appendage tips. The foregoing has been supplanted by phylogeny inferred from the internal transcribed spacer (ITS) of ribosomal DNA sequences (Saenz and Taylor, 1999), which correlates with conidial ontogeny and morphology (Braun et al., 2002). Host range: The pathogen is obligately parasitic on genera within the Vitaceae, including Vitis, Cissus, Parthenocissus and Ampelopsis (Pearson and Gadoury, 1992). The most economically important host is grapevine (Vitis), particularly the European grape, V. vinifera, which is highly susceptible to powdery mildew. Disease symptoms and signs: In the strictest sense, macroscopically visible mildew colonies are signs of the pathogen rather than symptoms resulting from its infection, but, for convenience, we describe the symptoms and signs together as the collective appearance of colonized host tissues. All green tissues of the host may be infected. Ascospore colonies are most commonly found on the lower surface of the first-formed leaves near the bark of the vine, and may be accompanied by a similarly shaped chlorotic spot on the upper surface. Young colonies appear whitish and those that have not yet sporulated show a metallic sheen. They are roughly circular, ranging in size from a few millimetres to a centimetre or more in diameter, and can occur singly or in groups that coalesce to cover much of the leaf. Senescent colonies are greyish, and may bear cleistothecia in various stages of development. Dead epidermal cells often subtend the colonized area, as natural mortality in the mildew colony, the use of fungicides, mycoparasites or resistance responses in the leaf result in the deaths of segments of the mildew colony and infected epidermal cells. Severely affected leaves usually senesce, develop necrotic blotches and fall prematurely. Infection of stems initially produces symptoms similar to those on leaves, but colonies on shoots are eventually killed as periderm forms, producing a dark, web-like scar on the cane (Gadoury et al., 2011). Inflorescences and berries are most susceptible when young, and can become completely coated with whitish mildew. The growth of the berry epidermal tissue stops when severely infected, which may result in splitting as young fruit expand. Berries in a transitional stage between susceptible and resistant (generally between 3 and 4 weeks after anthesis) develop diffuse, nonsporulating mildew colonies only visible under magnification. Diffuse colonies die as berries continue to mature, leaving behind a network of necrotic epidermal cells (Gadoury et al., 2007). Survival over winter as mycelium in buds results in a distinctive foliar symptom. Shoots arising from these buds may be heavily coated with fungal growth, stark white in colour and stand out like white flags in the vine, resulting in the term 'flag shoots'. More commonly, colonization of a flag shoot is less extensive, and infection of a single leaf, or of leaves on one side of the shoot only, is observed (Gadoury et al., 2011).