Large Mammals in an Agroforestry Mosaic in the Brazilian Atlantic Forest

The forest‐like characteristics of agroforestry systems create a unique opportunity to combine agricultural production with biodiversity conservation in human‐modified tropical landscapes. The cacao‐growing region in southern Bahia, Brazil, encompasses Atlantic forest remnants and large extensions of agroforests, locally known as cabrucas, and harbors several endemic large mammals. Based on the differences between cabrucas and forests, we hypothesized that: (1) non‐native and non‐arboreal mammals are more frequent, whereas exclusively arboreal and hunted mammals are less frequent in cabrucas than forests; (2) the two systems differ in mammal assemblage structure, but not in species richness; and (3) mammal assemblage structure is more variable among cabrucas than forests. We used camera‐traps to sample mammals in nine pairs of cabruca‐forest sites. The high conservation value of agroforests was supported by the presence of species of conservation concern in cabrucas, and similar species richness and composition between forests and cabrucas. Arboreal species were less frequently recorded, however, and a non‐native and a terrestrial species adapted to open environments (Cerdocyon thous) were more frequently recorded in cabrucas. Factors that may overestimate the conservation value of cabrucas are: the high proportion of total forest cover in the study landscape, the impoverishment of large mammal fauna in forest, and uncertainty about the long‐term maintenance of agroforestry systems. Our results highlight the importance of agroforests and forest remnants for providing connectivity in human‐modified tropical forest landscapes, and the importance of controlling hunting and dogs to increase the value of agroforestry mosaics.     

Black box and attics: Habitat selection and resource use by large threatened pythons in landscapes with contrasting human modification

Woodland and forest degradation, driven predominately by agricultural and pastoral production, is a crisis facing many species globally, in particular hollow‐dependent fauna. Large predatory species play important roles in both ecosystems and conservation strategies, but few studies have examined habitat selection of such species in intensively human‐modified landscapes. We quantified habitat selection and resource use by a large, top‐order and threatened snake (carpet python, Morelia spilota), between adjacent areas of high and low anthropogenic modification in inland Australia, a region that has undergone considerable alteration since European settlement. At the low‐impact site, snakes preferred tree hollows and a structurally complex understorey, whereas at the high‐impact site, snakes preferred homestead attics. Based on the decline of the species in this region, however, high‐impact landscapes may only support snakes when they are adjacent to low‐impact habitats. Invasive species comprised a large part of snake diets in both landscape types. Carpet pythons, with large home ranges and habitat requirements that overlap with many smaller threatened mammalian and avian fauna, are generally well liked and easily identifiable by rural landholders. Accordingly, they may play a key role in conservation strategies aimed at the protection of woodland and hollow‐dependent fauna in heavily modified landscapes of Australia's inland regions. However, invasive species, which tend to contribute to declines in native species inhabiting arid and semi‐arid Australia, are beneficial and important to pythons. Our study therefore highlights the diversity of effects that two major threats to biodiversity – habitat loss and invasive species – can have on different species within the same ecosystem.     

Viral gut metagenomics of sympatric wild and domestic canids,and monitoring of viruses: Insights from an endangered wolf population

Animal host–microbe interactions are a relevant concern for wildlife conservation, particularly regarding generalist pathogens, where domestic host species can play a role in the transmission of infectious agents, such as viruses, to wild animals. Knowledge on viral circulation in wild host species is still scarce and can be improved by the recent advent of modern molecular approaches. We aimed to characterize the fecal virome and identify viruses of potential conservation relevance of diarrheic free‐ranging wolves and sympatric domestic dogs from Central Portugal, where a small and threatened wolf population persists in a highly anthropogenically modified landscape. Using viral metagenomics, we screened diarrheic stools collected from wolves (n = 8), feral dogs (n = 4), and pet dogs (n = 6), all collected within wolf range. We detected novel highly divergent viruses as well as known viral pathogens with established effects on population dynamics, including canine distemper virus, a novel bocavirus, and canine minute virus. Furthermore, we performed a 4‐year survey for the six wolf packs comprising this endangered wolf population, screening 93 fecal samples from 36 genetically identified wolves for canine distemper virus and the novel bocavirus, previously identified using our metagenomics approach. Our novel approach using metagenomics for viral screening in noninvasive samples of wolves and dogs has profound implications on the knowledge of both virology and wildlife diseases, establishing a complementary tool to traditional screening methods for the conservation of threatened species.     

Vertebrate browsing impacts in a threatened montane plant community and implications for management

Montane ecosystems are vulnerable to the removal of vegetation cover through browsing by feral or native vertebrate fauna. The highest elevated peaks of the Stirling Range in Western Australia provide habitat for an endemic plant community, Critically Endangered due to plant disease, frequent fire and an emerging threat of browsing by vertebrate fauna. Survey and camera trapping confirmed the herbivorous feral Rabbit (Oryctolagus cuniculus) and native Quokka (Setonix brachyurus) are present. Dietary analysis through faecal examination revealed contrasting diets and implicates native rather than feral species as responsible for impacts on dicotyledonous species, and in particular those of conservation significance. Exclosure experiments conducted over 1 year revealed significant changes in abundance, cover and height of perennial herbs and an increase in growth and/or reproduction of four threatened endemic plants. Detrimental impacts caused by native browsing fauna are not unprecedented and may be attributed to disequilibria in ecosystem processes due to multiple interacting threats. Montane ecosystems may be particularly vulnerable to browsing due to their naturally slow recovery after disturbance and browsing may also create environmental conditions more conducive to plant disease. For plant species with critically low population numbers, the impact of browsing poses a threat to population persistence and undermines investment into other conservation recovery actions. For effective management, it is critical to determine the relative impact of browsing species present. Where native species are implicated, the physical protection of high value assets in wire exclosures is warranted to complement other recovery actions and ensure effective species and community recovery.     

Habitat preference of the striped legless lizard: Implications of grazing by native herbivores and livestock for conservation of grassland biota

Across the globe, many species of reptile are threatened with extinction, with changes in grazing pressure as a significant factor in their decline. Few studies have investigated the role of native herbivores, yet studying natural grazers may provide insight into natural grazing regimes, not apparent in studies of domestic livestock. In this study, we investigate the habitat requirements of a threatened Australian grassland reptile, the striped legless lizard, Delma impar, in grasslands grazed by a native herbivore, the eastern grey kangaroo Macropus giganteus. Delma impar appears sensitive to habitat change resulting from altered grazing intensity, but a lack of information hinders implementation of appropriate grazing regimes. To address this gap, we investigated habitat preferences of D. impar at multiple spatial scales across a grazing gradient. We found that the occurrence of D. impar was not affected by the size of grassland remnants, but was negatively related to the density of native grazers. This result was likely a consequence of the negative effect of high grazing intensity on grass structural complexity, as the probability of encountering a D. impar was positively related to grass structural complexity at the fine scale (1 m²). We recommend that conservation efforts should avoid high intensity grazing (equivalent to > 1.3 kangaroos/ha), yet ensure enough grazing disturbance is maintained to promote the formation of complex grass structures. We also recommend that small floristically degraded and fragmented grassland habitat should be included in conservation efforts. These recommendations will likely benefit a number of faunal species in grasslands grazed by domestic and native grazers. Importantly, our data highlight the need for managing grazing regimes, even in environments dominated by native herbivores.     

Protura in native and exotic forests in the North Island of New Zealand

Abstract

This study provides data on population and community ecology of Protura in native forests and Pinus radiata plantations in New Zealand. Abundance, age structure, sex ratios, biodiversity, and relationship with soil chemistry are discussed. Protura were significantly more abundant in pine plantations in comparison to native forests. Among native forests, Protura were most abundant under Southern beech (Nothofagus solandri). The abundance patterns may reflect the association between Protura and fungal communities in the soil. No correlation was found between soil organic matter, nitrogen, phosphorous, pH, cation exchange capacity, and the density of Protura. Protura assemblage composition was significantly related to forest type. New Zealand endemic species were associated with native forests; species with distribution outside New Zealand dominated in pine plantations. The distribution records within New Zealand were expanded for five species. The Protura fauna of New Zealand was increased to 18 species. Berberentulus capensis, Eosentomon australicum and Australentulus tillyardi are new records for New Zealand fauna.     

Conservation of genetic uniqueness in remaining populations of red squirrels (Sciurus vulgaris L.) in the South of England

The Eurasian red squirrel (Sciurus vulgaris) is an emblematic species for conservation, and its decline in the British Isles exemplifies the impact that alien introductions can have on native ecosystems. Indeed, red squirrels in this region have declined dramatically over the last 60 years due to the spread of squirrelpox virus following the introduction of the gray squirrel (Sciurus carolinensis). Currently, red squirrel populations in Britain are fragmented and need to be closely monitored in order to assess their viability and the effectiveness of conservation efforts. The situation is even more dramatic in the South of England, where S. vulgaris survives only on islands (Brownsea Island, Furzey Island, and the Isle of Wight). Using the D‐loop, we investigated the genetic diversity and putative ancestry of the squirrels from Southern England and compared them to a European dataset composed of 1,016 samples from 54 populations. We found that our three populations were more closely related to other squirrels from the British Isles than squirrels from Europe, showed low genetic diversity, and also harbored several private haplotypes. Our study demonstrates how genetically unique the Southern English populations are in comparison with squirrels from the continental European range. We report the presence of four private haplotypes, suggesting that these populations may potentially harbor distinct genetic lineages. Our results emphasize the importance of preserving these isolated red squirrel populations for the conservation of the species.     

Changes in fish assemblages in catchments in north‐eastern Spain: biodiversity,conservation status and introduced species

1. North‐eastern Spain is a hot spot for the introduction of alien fish species, and its native fish fauna is one of the most endangered worldwide. We used an extensive data set from 2002 to 2003 and historical information from the area to characterize fish diversity and establish conservation priorities in river catchments. 2. Diversity indices were used to characterize fish diversity at the basin scale. An index of conservation status was applied for each species, which considers the occurrence, abundance and endemicity of each taxon. We used indirect ordination methods to test the relationship among basin features and to identify those variables most correlated with each other. To identify physical, biotic and environmental characteristics that seem to make a basin particularly susceptible to invasion, we performed a step‐wise multiple regression to examine the relationship between the number of native, translocated and introduced fish species (including the original native species richness of each basin), and landscape variables. 3. Over a period of approximately 50 years, the mean range size of native fish species has decreased by 60%. The greatest decline occurred in Gasterosteus gymnurus, Anguilla anguilla and Salaria fluviatilis, for which species over 75% of the original distribution area has been lost. The species with the highest conservation index were Gasterosteus gymnurus and Salaria fluviatilis. 4. Basin area and the catchment type explained 70% of variation in native species richness, whereas the number of dams and basin area accounted for more than 80% of variation in the number of introduced species. 5. The original native species richness and the number of introduced species at basin scale were not related, and thus there was no evidence of “biotic resistance” to invasion. The restoration of natural hydrologic processes and the development of specific management tools to protect native species, such as the prioritization of areas for fish conservation and the eradication of local populations of exotic species, are required to restore native fish fauna in these catchments.     

Sand fly fauna (Diptera: Psychodidae) from the Goytacazes National Forest and surrounding areas of southeastern Brazil

Most studies of the sand fly fauna in southeastern Brazil are conducted in the peridomiciliary environment of leishmaniasis endemic regions. Therefore, to increase the knowledge about diversity and richness of sand fly conservation areas, we describe here the sand fly fauna from the National Forest of Goytacazes (NFG), state of Espírito Santo, Brazil, and its surroundings areas. We also used sand fly fauna records from eight conservations units within the state of Espírito Santo to understand the similarity and relationships among them. The sand flies were simultaneously collected from June, 2008 to May, 2009 in two different environments: a preserved environment represented by the NFG and a modified environment represented by a peridomicile. To establish the similarity among the conservation units, we used a method very similar to parsimony analysis of endemism. We collected 2,466 sand fly specimens belonging to 13 species. Pressatia choti and Nyssomyia intermedia were the most abundant sand fly species. Ny. intermedia is a known vector of Leishmania braziliensis and epidemiological surveillance must be conducted in the area. We discuss aspects regarding the diversity of sand flies as well as the risk of transmission of Leishmania parasites in the area. We also provide for the first time a hypothesis of similarity relationships among conservation units within the state of Espírito Santo.     

The good,the bad,and the ugly: which Australian terrestrial mammal species attract most research?

相似文献   

The role of native forest plantations in the conservation of Neotropical birds: the case of the Andean alder

The gradual increase in reforested areas worldwide, as a strategy for mitigating native forest loss, has stressed the need of assessing their real value as habitat for native species. Forest plantations, particularly those based on native species, could be valuable for conservation purposes, especially in heavily fragmented and disturbed ecosystems. We evaluated the value of a monoculture of a native tree species, the Andean alder (Alnus acuminata), for the conservation of avifauna in the Central Andes region, which is considered a bird species diversity hotspot but also suffers from high anthropogenic disturbance levels. Our results suggest that alder plantations are valuable for conservation from three points of view: (1) they have similar or greater bird species richness and abundance than secondary native forests; (2) low community similarities are found between this type of forest compared to secondary forest stands (with 27 species exclusive to alder plantations); and (3) three near threatened species (Odontophorus hyperythrus, Eriocnemis derbyi, and Cyanolyca viridicyanus). Further, 27 out of the 85 species found at the alder plantations were of least concern but showing decreasing population trends. While forest plantations do not replace native forests, they offer habitat for many bird species, some of them being of conservation concern (i.e., included in an IUCN threat category) or with decreasing populations. Hence establishing native species plantations among native forest remnants – especially in heavily fragmented landscapes – could have a positive effect in the conservation of threatened avifauna.     

Genetic evidence challenges the native status of a threatened freshwater fish (Carassius carassius) in England

A fundamental consideration for the conservation of a species is the extent of its native range, that is, regions naturally colonized. However, both natural processes and human‐mediated introductions can drive species distribution shifts. Ruling out the human‐mediated introduction of a species into a given region is vital for its conservation, but remains a significant challenge in most cases. The crucian carp Carassius carassius (L.) is a threatened freshwater fish thought to be native to much of Europe. However, its native status in England is based only on anecdotal evidence. Here, we devise an approach that can be used to empirically test the native status of English fauna. We use this approach, along with 13 microsatellite loci, population structure analyses, and Approximate Bayesian Computation (ABC), to test hypotheses for the origins of C. carassius in England. Contrary to the current consensus, we find strong support for the human‐mediated introduction of C. carassius into England during the 15th century. This result stimulates an interesting and timely debate surrounding motivations for the conservation of species. We discuss this topic, and the potential for continued conservation of C. carassius in England, despite its non‐native origins.     

Distribution of ground-dwelling beetles in fragmented tropical habitats

The conservation of biodiversity is increasingly dependent on human-altered habitats. In a fragmented forest landscape in northern Costa Rica within the Mesoamerican Biological Corridor, an area of great conservation importance, we compared the diversity and composition of ground-dwelling beetle communities in five habitat types along a gradient of increasing disturbance: primary forest, logged forest, secondary forest, plantation (Gmelina arborea) and pasture. Using pitfall trapping we captured a total of 1,877 beetles (Coleoptera), comprising 422 morphospecies in 26 families. The plantation sites had the lowest number of species followed by secondary forest and pasture. Multivariate analysis separated the beetle fauna according to land use, and suggested that only the logged forest maintains a similar species assemblage to primary forest. However, each habitat harboured a number of unique species indicating the conservation value of the mosaic of habitats found in fragmented landscapes. Our results suggest that to maintain forest beetle species diversity it is essential that areas of natural forest are conserved. However, other land uses also provide beetle habitats and in fragmented areas active management to maintain a mosaic of land uses will contribute to the conservation of beetle diversity.     

Current and predicted distribution of the pathogenic fungus Batrachochytrium dendrobatidis in Colombia,a hotspot of amphibian biodiversity

Global amphibian declines have been attributed to several factors including the chytrid fungal pathogen, Batrachochytrium dendrobatidis (Bd), that infects hosts’ skin and causes death by inhibiting immune response and impairing osmoregulatory function. Here, we integrate extensive new field data with previously published locality records of Bd in Colombia, a megadiverse and environmentally heterogeneous country in northwestern South America, to determine the relative importance of environmental variables and reproductive mode for predicting the risk of Bd infection in amphibians. We surveyed 81 localities across Colombia and sampled 2876 individual amphibians belonging to 14 taxonomic families. Through a combination of end‐point PCR and real‐time PCR analyses, Bd was detected in 338 individuals (12%) representing 43 localities (53%) distributed from sea level to 3200 m. We found that annual mean temperature and variables related with seasonality in precipitation and temperature appeared to define the most suitable areas for the establishment of the pathogen. In addition, prevalence of infection appeared to be higher in species with a terrestrial reproductive mode. Our study provides the first large‐scale study of the current and potential distribution of Bd in the biodiversity hotspot centered on Colombia. We hope the newly provided information on the extent of the distribution of the pathogen and the potential areas where Bd may impact the amphibian fauna will inform decision making by environmental authorities and future conservation action.     

Species distribution modelling of the endangered Mahogany Glider (Petaurus gracilis) reveals key areas for targeted survey and conservation

The Mahogany Glider (Petaurus gracilis) is one of the most endangered marsupials in Australia. Its known distribution is an approximately 120 km strip of fragmented coastal woodland in north-east Queensland, from north of Townsville to the Tully area. Records are clustered in a number of well-surveyed areas, with significant areas of lowland habitat unsurveyed. Around 30% of historic records fall in areas that were subsequently cleared for farmland, and ongoing clearing and fragmentation of lowland sclerophyll forest continues within the potential distribution. Resolving the distribution is an urgent requirement to guide conservation but Mahogany Gliders are difficult to detect in the field. Species distribution modelling offers a technique for estimating the fine-scale distribution and for targeting further field survey and conservation efforts. We used known occurrence records (N = 481) to predict the distribution of Mahogany Gliders across the Wet Tropics bioregion. We used climatic, topographic and other environmental predictors to generate distribution models using Maxent and Random Forest algorithms, each with two bias correction methods. The predictions revealed that many unknown populations may exist within the currently defined distribution and in important areas beyond this (e.g. Hinchinbrook Island). There was reasonable congruence between models, and we include syntheses of the models to present the most likely current distribution. The most important predictor variables across the models were precipitation seasonality (high seasonality), elevation (generally <100 m), soil type (hydrosols) and vegetation type (including Eucalyptus and Melaleuca woodlands). Our results identify core habitat and reveal key areas that require targeted field surveys. Importantly, the predicted suitable habitat is highly fragmented and ongoing conservation efforts need to improve habitat connectivity and limit further fragmentation.     

Conservation and ecological implications of the use of space by chilla foxes and free‐ranging dogs in a human‐dominated landscape in southern Chile

We investigated whether domestic dogs (Canis lupus familiaris) influenced the use of space by chilla foxes (Lycalopex griseus) in southern Chile and tested the hypothesis that dogs interfere with chillas. We used scent stations and occurrence of scats within systematically placed plots to assess habitat use by both species and to test whether dogs were associated to the use of space by chillas. Activity data were obtained from captures for both species, and telemetry for foxes. Diet of both species was analysed in order to tease out the potential existence of exploitation competition. We found that, when active, chillas used prairies more and native forest less than expected according to availability, whereas inactive chillas (during the day) preferred native forest, the only habitat type that dogs did not use. The odds of dog occurrence increased at shorter distance to human houses, whereas the inverse pattern was observed for chillas. Poisson models showed that the number of chilla visits to scent stations was negatively correlated with the number of dog visits. We observed dogs persecuting and/or killing chillas which was also corroborated by local people that used dogs to prevent chilla‐related poultry losses, supporting the idea that dogs harass foxes actively. The analysis of scats showed that dogs fed mainly on house food and domestic ruminant carcasses whereas foxes fed on hare, hens, mice and wild birds, thus suggesting that exploitation competition is not a strong alternative hypothesis as a proximate cause for the patterns observed. We conclude that dogs seem to constrain the use of space by wild carnivores via interference.     

Rapid Decline of a Grassland System and Its Ecological and Conservation Implications

One of the most important conservation issues in ecology is the imperiled state of grassland ecosystems worldwide due to land conversion, desertification, and the loss of native populations and species. The Janos region of northwestern Mexico maintains one of the largest remaining black-tailed prairie dog (Cynomys ludovicianus) colony complexes in North America and supports a high diversity of threatened and endangered species. Yet, cattle grazing, agriculture, and drought have greatly impacted the region. We evaluated the impact of human activities on the Janos grasslands, comparing changes in the vertebrate community over the last two decades. Our results reveal profound, rapid changes in the Janos grassland community, demonstrating large declines in vertebrate abundance across all taxonomic groups. We also found that the 55,000 ha prairie dog colony complex has declined by 73% since 1988. The prairie dog complex has become increasingly fragmented, and their densities have shown a precipitous decline over the years, from an average density of 25 per ha in 1988 to 2 per ha in 2004. We demonstrated that prairie dogs strongly suppressed woody plant encroachment as well as created open grassland habitat by clearing woody vegetation, and found rapid invasion of shrubland once the prairie dogs disappeared from the grasslands. Comparison of grasslands and shrublands showed markedly different species compositions, with species richness being greatest when both habitats were considered together. Our data demonstrate the rapid decline of a grassland ecosystem, and documents the dramatic loss in biodiversity over a very short time period concomitant with anthropogenic grassland degradation and the decline of a keystone species.     

The effect of anthropic pressures and elevation on the large and medium-sized terrestrial mammals of the subtropical mountain forests (Yungas) of NW Argentina

We conducted a 55-day long camera-trap survey in the Yungas subtropical forest in NW Argentina, to assess the effect of human accessibility, conservation status of the area, domestic animals and elevation on the diversity and composition of the large and medium-sized native terrestrial mammal assemblage. We deployed 24 camera-trap stations at distances of ～2 km from each other. The study area is covered by continuous forest and has its center in the small community of Acambuco, in the Acambuco Provincial Reserve. The main economic activity in the area is oil/gas exploitation. Local residents raise cattle, hunt and use timber and non-timber forest products. The human impact was indirectly measured with an accessibility cost model. We used a multiple regression ANCOVA to assess the effect of elevation (range: 628–1170 masl), accessibility, protection status (reserve vs not) and frequency of records of domestic animals on the native mammal species richness and on a nonmetric multidimensional scaling (NMDS) ordination based on the frequency of records of the native mammals recorded at >3 camera-trap stations. We recorded 15 species of native mammals. Native mammal species richness decreased with elevation. Elevation was correlated with NMDS axes. Other predictive variables had no effect on species richness or the NMDS ordination, probably as a result of the relatively narrow range of conditions assessed in this study. The effect of elevation on mammal assemblages should be considered in landscape planning processes aimed at promoting biodiversity conservation.