多年冻土退化对湿地甲烷排放的影响研究进展

全球气候变暖导致北半球大部分多年冻土区的冻土已经开始退化。多年冻土退化对冻土区湿地CH₄排放产生重要影响,可能直接决定冻土区湿地对全球气候变暖的反馈方式。综述了近年来多年冻土退化对湿地CH₄排放影响的研究。多年冻土退化导致的土壤活动层深度增加和植被类型由中生向湿生的转变都可能会大大增加冻土区湿地CH₄排放量,从而可能对全球气候变暖产生正反馈作用。但多年冻土退化导致的水文条件变化、土壤温度变化和微生物组成及活性变化对湿地CH₄排放的影响却存在一定的不确定性。多年冻土退化除了影响湿地CH₄排放量之外,还可能通过改变土壤冻融过程而影响湿地CH₄排放的季节分配模式。最后提出目前研究中存在的问题,并对未来研究方向进行了展望。     

Termites Facilitate Methane Oxidation and Shape the Methanotrophic Community

Termite-derived methane contributes 3 to 4% to the total methane budget globally. Termites are not known to harbor methane-oxidizing microorganisms (methanotrophs). However, a considerable fraction of the methane produced can be consumed by methanotrophs that inhabit the mound material, yet the methanotroph ecology in these environments is virtually unknown. The potential for methane oxidation was determined using slurry incubations under conditions with high (12%) and in situ (∼0.004%) methane concentrations through a vertical profile of a termite (Macrotermes falciger) mound and a reference soil. Interestingly, the mound material showed higher methanotrophic activity. The methanotroph community structure was determined by means of a pmoA-based diagnostic microarray. Although the methanotrophs in the mound were derived from populations in the reference soil, it appears that termite activity selected for a distinct community. Applying an indicator species analysis revealed that putative atmospheric methane oxidizers (high-indicator-value probes specific for the JR3 cluster) were indicative of the active nest area, whereas methanotrophs belonging to both type I and type II were indicative of the reference soil. We conclude that termites modify their environment, resulting in higher methane oxidation and selecting and/or enriching for a distinct methanotroph population.     

湿地甲烷代谢对氮输入响应的复杂性及其机制分析

氮素是影响湿地甲烷代谢过程的重要因素之一。氮输入是否影响湿地甲烷排放,增加全球气候变暖的风险,一直受到科学界的高度关注。目前关于氮输入对湿地甲烷排放影响的几篇meta-analysis文章的主要结论均为氮输入促进湿地甲烷排放,但是多篇研究性论文的结果为氮输入抑制或不影响湿地甲烷排放,由此可见氮输入对湿地甲烷排放的影响十分复杂。湿地甲烷代谢包括湿地甲烷产生、氧化和传输过程以及最终的甲烷排放,综述不同形态氮输入对水稻田、内陆湿地和滨海湿地甲烷排放通量影响的复杂性;分析湿地甲烷产生速率和途径、甲烷好氧氧化和硝酸盐/亚硝酸盐型厌氧甲烷氧化对不同形态氮输入的响应及机制。硝态氮输入对湿地甲烷产生具有抑制作用已成共识,然而其它形态氮输入对湿地土壤甲烷产生的影响具有较大的不确定性,氮输入影响湿地甲烷产生的机制主要包括电子受体-底物竞争机制、离子毒性机制、促进植物生长-碳底物供给增加机制以及pH调控机制等。氮输入对湿地好氧甲烷氧化影响的研究多集中在水稻田和泥炭湿地,影响的结果包括促进、抑制或影响不显著;氮输入促进湿地土壤硝酸盐/亚硝酸盐型厌氧甲烷氧化。着重分析氮输入对湿地甲烷代谢影响不确定性的成因,指出...     

Isolation of Methylococcus Strain Resistant to Abnormal Climate Change to Reduce Methane Emissions from the Iranian Salt Lake

Abstract

An increase in the atmospheric concentration of methane greenhouse gas results in an increase in global warming, surface water evaporation, and amount of the solutes in relevant areas besides, it also causes climate change. In these situations, methanotrophs that are resistant to climate change and deserted conditions could be applied. Methylococcus, as one of the most extensively studied methanotrophs is highly resistant to salinity, a strain of which was isolated in this study from Hoz-e Soltan Salt Lake in Iran as an example influenced by climate change. Isolated strain was identified. To determine the ability of the bacteria for decrease of methane gas, the culture medium was analyzed by gas chromatography. Results showed that isolated strain is able to grow in salt proportion of 3.3% and acidic pH of 3.5 in vitro, reducing more than 75% of total methane gas within 10?days. In addition to nitrogen fixation ability of the strain, positive results obtained regarding drought tolerance and heat shock in this study confirmed that Methylococcus strains may be able to withstand environmental conditions of foreseeable future. Thus, to prevent methane emission in regions such as Hoz-e Soltan Salt Lake in Iran, more compatible methanotroph strains need to be identified and used.     

Exploring methanotroph diversity in acidic northern wetlands: Molecular and cultivation-based studies

Acidic wetlands of the northern hemisphere are an important source of methane, a major greenhouse gas. The taxonomic identity of the aerobic methanotrophic bacteria, which colonize these environments and reduce the potential flux of methane to the atmosphere, has remained elusive for a long time. Both cultivation-independent molecular approaches and cultivation-based studies have been used to identify methanotrophs in this acidic habitat. It was shown that acidic peat is colonized mainly by methanotrophic representatives of the Alphaproteobacteria: Methylocystis spp., Methylocella spp. and Methylocapsa spp. Novel methanotrophic isolates from acidic wetlands display a number of unique characteristics and metabolic traits including unusual cell ultrastructure and fatty acid composition, ability to utilize some multicarbon compounds as growth substrates, and new regulatory mechanisms of methane oxidation. Several other methanotroph populations, which have been detected in acidic peat by molecular approaches but have so far eluded isolation, represent a challenge for further cultivation studies.     

甲烷氧化过程中铜的作用研究进展

甲烷生物氧化在全球甲烷平衡和温室效应控制中扮演着重要的角色,而铜是甲烷生物氧化过程中的重要影响因子.一方面,铜是调控不同类型甲烷单加氧酶表达的主要影响因子,是组成颗粒性甲烷单加氧酶的必需金属元素;另一方面,在自然环境体系中,铜含量及其形态的变化对甲烷氧化菌的分布、代谢甲烷和非甲烷类有机化合物的能力以及甲烷氧化菌的特异性铜捕获系统也会产生较大影响.准确把握铜在甲烷生物氧化过程中发挥的作用将有助于全面了解甲烷生物氧化过程,进而更好地指导甲烷氧化微生物在温室气体减排及非甲烷有机物污染修复中的应用.本文主要从铜的角度,概述了铜对甲烷氧化菌的分布和活性的影响,介绍了铜在调控甲烷单加氧酶的表达和活性以及调节甲烷氧化菌铜捕获系统方面的作用,并展望了其研究方向.     

Hydrology is reflected in the functioning and community composition of methanotrophs in the littoral wetland of a boreal lake

In lake ecosystems a major proportion of methane (CH(4) ) emissions originate from the littoral zone, which can have a great spatial variability in hydrology, soil quality and vegetation. Hitherto, spatial heterogeneity and the effects it has on functioning and diversity of methanotrophs in littoral wetlands have been poorly understood. A diagnostic microarray based on the particulate methane monooxygenase gene coupled with geostatistics was used to analyse spatial patterns of methanotrophs in the littoral wetland of a eutrophic boreal lake (Lake Kev?t?n, Eastern Finland). The wetland had a hydrology gradient with a mean water table varying from -8 to -25 cm. The wettest area, comprising the highest CH(4) oxidation, had the highest abundance and species richness of methanotrophs. A high water table favoured the occurrence of type Ib methanotrophs, whereas types Ia and II were found under all moisture conditions. Thus the spatial heterogeneity in functioning and diversity of methanotrophs in littoral wetlands is highly dependent on the water table, which in turn varies spatially in relation to the geomorphology of the wetland. We suggest that changes in water levels resulting from regulation of lakes and/or global change will affect the abundance, activity and diversity of methanotrophs, and consequently CH(4) emissions from such systems.     

Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers

Landfill sites are responsible for 6-12% of global methane emission. Methanotrophs play a very important role in decreasing landfill site methane emissions. We investigated the methane oxidation capacity and methanotroph diversity in lysimeters simulating landfill sites with different plant vegetations. Methane oxidation rates were 35 g methane m-2 day-1 or higher for planted lysimeters and 18 g methane m-2 day-1 or less for bare soil controls. Best methane oxidation, as displayed by gas depth profiles, was found under a vegetation of grass and alfalfa. Methanotroph communities were analysed at high throughput and resolution using a microbial diagnostic microarray targeting the particulate methane monooxygenase (pmoA) gene of methanotrophs and functionally related bacteria. Members of the genera Methylocystis and Methylocaldum were found to be the dominant members in landfill site simulating lysimeters. Soil bacterial communities in biogas free control lysimeters, which were less abundant in methanotrophs, were dominated by Methylocaldum. Type Ia methanotrophs were found only in the top layers of bare soil lysimeters with relatively high oxygen and low methane concentrations. A competetive advantage of type II methanotrophs over type Ia methanotrophs was indicated under all plant covers investigated. Analysis of average and individual results from parallel samples was used to identify general trends and variations in methanotroph community structures in relation to depth, methane supply and plant cover. The applicability of the technology for the detection of environmental perturbations was proven by an erroneous result, where an unexpected community composition detected with the microarray indicated a potential gas leakage in the lysimeter being investigated.     

Analysis of Methane Monooxygenase Genes in Mono Lake Suggests That Increased Methane Oxidation Activity May Correlate with a Change in Methanotroph Community Structure

Mono Lake is an alkaline hypersaline lake that supports high methane oxidation rates. Retrieved pmoA sequences showed a broad diversity of aerobic methane oxidizers including the type I methanotrophs Methylobacter (the dominant genus), Methylomicrobium, and Methylothermus, and the type II methanotroph Methylocystis. Stratification of Mono Lake resulted in variation of aerobic methane oxidation rates with depth. Methanotroph diversity as determined by analysis of pmoA using new denaturing gradient gel electrophoresis primers suggested that variations in methane oxidation activity may correlate with changes in methanotroph community composition.     

An ecological perspective on methane emissions from northern wetlands

Wetlands are significant sources of atmospheric methane, an important radiatively active ‘greenhouse’ gas that accounts for an estimated 12% of total greenhouse warming. Since global climate models predict the greatest temperature and precipitation changes at high latitudes, and as the largest areas of wetland (346 × 10⁶ha) are in the boreal and subarctic regions (40–70°N), recent research has focused on Identifying the factors that control methane emission from northern wetlands. Over the past few years, the database has expanded tremendously, and much progress has been made in understanding the environmental controls on methane emission at small spatial and temporal scales. However, we now need to broaden our understanding of regional differences in methane emission, ecological responses of northern wetlands to climate change, and the effect of other perturbations such as drainage and flooding.     

Active Methanotrophs in Two Contrasting North American Peatland Ecosystems Revealed Using DNA-SIP

The active methanotroph community was investigated in two contrasting North American peatlands, a nutrient-rich sedge fen and nutrient-poor Sphagnum bog using in vitro incubations and ¹³C-DNA stable-isotope probing (SIP) to measure methane (CH₄) oxidation rates and label active microbes followed by fingerprinting and sequencing of bacterial and archaeal 16S rDNA and methane monooxygenase (pmoA and mmoX) genes. Rates of CH₄ oxidation were slightly, but significantly, faster in the bog and methanotrophs belonged to the class Alphaproteobacteria and were similar to other methanotrophs of the genera Methylocystis, Methylosinus, and Methylocapsa or Methylocella detected in, or isolated from, European bogs. The fen had a greater phylogenetic diversity of organisms that had assimilated ¹³C, including methanotrophs from both the Alpha- and Gammaproteobacteria classes and other potentially non-methanotrophic organisms that were similar to bacteria detected in a UK and Finnish fen. Based on similarities between bacteria in our sites and those in Europe, including Russia, we conclude that site physicochemical characteristics rather than biogeography controlled the phylogenetic diversity of active methanotrophs and that differences in phylogenetic diversity between the bog and fen did not relate to measured CH₄ oxidation rates. A single crenarchaeon in the bog site appeared to be assimilating ¹³C in 16S rDNA; however, its phylogenetic similarity to other CO₂-utilizing archaea probably indicates that this organism is not directly involved in CH₄ oxidation in peat.     

湿地微生物介导的甲烷排放机制

湿地生态系统是陆地上巨大的有机碳库,同时也是大气中甲烷(CH_4)的主要排放源。由于CH_4对全球的增温潜能是CO2的34倍,因此关于湿地CH_4排放在全球气候变化中有关碳汇、碳源的研究具有极其重要的意义。全球80%–90%的CH_4排放离不开微生物活动,湿地生态系统中产CH_4菌和CH_4氧化菌的种类组成、数量及功能与CH_4通量密切相关,但基于湿地生态系统中介导CH_4循环的功能微生物对甲烷排放通量的影响及作用机制研究相对比较分散。为更好地认识微生物介导的CH_4排放过程的微生物调控机制,本文综述了湿地生态系统中参与CH_4循环的功能微生物,对介导CH_4循环相关微生物活性的影响因子进行了回顾,重点总结了湿地生态系统微生物介导的CH_4排放机制,并对未来的相关研究方向进行了展望。由于湿地微生物介导的碳循环过程也可能决定了湿地生态系统对全球气候变暖的反馈,因此本文也能为全球气候变化研究提供微生物方面的参考。     

内陆湿地与水体甲烷厌氧氧化功能微生物研究进展

内陆湿地与水体(如湖泊、河流、水库等)是温室气体甲烷的重要排放源。微生物介导的甲烷厌氧氧化(anaerobic oxidation of methane,AOM)反应在控制内陆湿地与水体甲烷排放中起着不可忽视的作用,对缓解全球温室效应具有重要意义。内陆湿地与水体易形成缺氧环境,且电子受体的种类和数量繁多,是发生AOM反应的理想生境。近年来,不断有研究表明,内陆湿地与水体中存在多种电子受体(NO₂^-、NO₃^-、SO₄^2-、Fe (III)等)驱动的AOM途径。NC10门细菌和甲烷厌氧氧化古菌(anaerobic methanotrophic archaea,ANME)的一新分支ANME-2d主导了湿地和水体环境中的AOM反应,其中ANME-2d具有根据环境条件选择不同电子受体的潜力。研究系统综述了内陆湿地与水体中不同电子受体驱动的AOM途径及其参与的主要功能微生物类群;分析了AOM反应在控制温室气体甲烷排放中的作用及其环境影响因素;总结了相关功能微生物的分子生物学检测方法及甲烷厌氧氧化活性测定的同位素示踪技术。最后,对未来相关研究方向进行了展望。     

Bacterial Community Structure in Two Permafrost Wetlands on the Tibetan Plateau and Sanjiang Plain,China

Permafrost wetlands are important methane emission sources and fragile ecosystems sensitive to climate change. Presently, there remains a lack of knowledge regarding bacterial communities, especially methanotrophs in vast areas of permafrost on the Tibetan Plateau in Northwest China and the Sanjiang Plain (SJ) in Northeast China. In this study, 16S rRNA-based quantitative PCR (qPCR) and 454 pyrosequencing were used to identify bacterial communities in soils sampled from a littoral wetland of Lake Namco on the Tibetan Plateau (NMC) and an alluvial wetland on the SJ. Additionally, methanotroph-specific primers targeting particulate methane monooxygenase subunit A gene (pmoA) were used for qPCR and pyrosequencing analysis of methanotrophic community structure in NMC soils. qPCR analysis revealed the presence of 10¹⁰ 16S rRNA gene copies per gram of wet soil in both wetlands, with 10⁸ pmoA copies per gram of wet soil in NMC. The two permafrost wetlands showed similar bacterial community compositions, which differed from those reported in other cold environments. Proteobacteria, Actinobacteria , and Chloroflexi were the most abundant phyla in both wetlands, whereas Acidobacteria was prevalent in the acidic wetland SJ only. These four phyla constituted more than 80 % of total bacterial community diversity in permafrost wetland soils, and Methylobacter of type I methanotrophs was overwhelmingly dominant in NMC soils. This study is the first major bacterial sequencing effort of permafrost in the NMC and SJ wetlands, which provides fundamental data for further studies of microbial function in extreme ecosystems under climate change scenarios.     

基于过程模型的青藏高原湿地甲烷排放格局评估

甲烷(CH_4)是大气中最丰富的碳氢化合物,是仅次于二氧化碳(CO_2)的温室气体。湿地是甲烷的重要来源,在全球碳循环中发挥着重要作用,其排放的甲烷占所有天然甲烷排放源的70%,占全球甲烷排放总量的24.8%。青藏高原平均海拔4000 m以上,占有中国约三分之一的湿地。近几十年来,由于全球气候变暖和降水增加,该地区甲烷排放率和湿地面积都发生着巨大变化,因此,青藏高原湿地CH_4排放的长期变化在很大程度上仍存在较大的不确定性。利用TRIPLEX-GHG模型模拟了青藏高原湿地1978—2008年CH_4排放的动态特征,研究结果表明:(1)1978—2008年青藏高原湿地CH_4排放速率呈逐渐增加趋势。(2)青藏高原大多数湿地区域CH_4排放速率为0—6.13 g CH_4 m~(-2 )a~(-1);东北部分湿地区域CH_4排放速率为6.14—20.19 g CH_4 m~(-2 )a~(-1);较高的CH_4排放速率分布于青藏高原南部湿地区域,为56.14—74.97 g CH_4 m~(-2 )a~(-1)。(3)青藏高原湿地CH_4排放量在1978、1990、2000年和2008年分别为0.21、0.23、0.27和0.32 Tg CH_4 a~(-1)。在1978—1990年,尽管CH_4排放速率增加,但湿地面积减少,因此这一时期青藏高原湿地CH_4排放量并未发生明显变化。随后由于降水增加和冰川融化,使得湿地面积逐渐增加,青藏高原湿地CH_4排放量也呈现增加趋势。     

Abundance, distribution and potential activity of methane oxidizing bacteria in permafrost soils from the Lena Delta, Siberia

The methane oxidation potential of active layer profiles of permafrost soils from the Lena Delta, Siberia, was studied with regard to its respond to temperature, and abundance and distribution of type I and type II methanotrophs. Our results indicate vertical shifts within the optimal methane oxidation temperature and within the distribution of type I and type II methanotrophs. In the upper active layer, maximum methane oxidation potentials were detected at 21 degrees C. Deep active layer zones that are constantly exposed to temperatures below 2 degrees C showed a maximum potential to oxidize methane at 4 degrees C. Our results indicate a dominance of psychrophilic methanotrophs close to the permafrost table. Type I methanotrophs dominated throughout the active layer profiles but their number strongly fluctuated with depth. In contrast, type II methanotrophs were constantly abundant through the whole active layer and displaced type I methanotrophs close to the permafrost table. No correlation between in situ temperatures and the distribution of type I and type II methanotrophs was found. However, the distribution of type I and type II methanotrophs correlated significantly with in situ methane concentrations. Beside vertical fluctuations, the abundance of methane oxidizers also fluctuated according to different geomorphic units. Similar methanotroph cell counts were detected in samples of a flood plain and a polygon rim, whereas cell counts in samples of a polygon centre were up to 100 times lower.