Plant community and soil available nutrients drive arbuscular mycorrhizal fungal community shifts during alpine meadow degradation

Arbuscular mycorrhizal fungi (AMF) play an important role in maintaining the function and sustainability of grassland ecosystem, but they are also susceptible to environmental changes. In recent decades, alpine meadows on the Tibetan Plateau have experienced severe degradation due to the impact of human activities and climate change. But it remains unclear how degradation affects the AMF community, a group of functionally important root associated microorganisms, which potentially limit the development and application of microbial technologies in the restoration of degraded grasslands. In this study, we investigated AMF communities richness and composition in non-degraded (ND), moderately degraded (MD) and severely degraded (SD) alpine meadows on the Tibetan Plateau, and then explored their main biotic and abiotic determinants. Alpine meadow degradation significantly reduced plant community biomass, richness, soil organic carbon, total nitrogen, total phosphorus, available nitrogen and available phosphorus, but increased soil pH. AMF community composition and the iesdominant family and genera differed significantly among different degradation stages. Grassland degradation shifted the AMF community composition in favor of Claroideoglomus over Rhizophagus, and resulted in a marked loss of Glomeraceae and the dominance of Diversisporaceae. Alpine meadow degradation significantly increased AMF hyphal density and richness, likely working as a plant strategy to relieve nutrient deficiencies or loss as a result of degradation. The structural equation model showed that AMF community richness and composition were significantly influenced by plant community, followed by soil available nutrients. Soil available nutrients was the key contributor to the increased AMF hyphal density and richness during grassland degradation. Our findings identify the effects of alpine meadow degradation on AMF richness and highlight the importance of the plant community in shaping the AMF community during alpine meadow degradation. These results suggest that plant community restoration should be the primary goal for the ecological restoration of degraded alpine meadows, and these soil functional microorganisms should be simultaneously integrated into ecological restoration strategies and management.     

Carbon for nutrient exchange between arbuscular mycorrhizal fungi and wheat varies according to cultivar and changes in atmospheric carbon dioxide concentration

Arbuscular mycorrhizal fungi (AMF) form symbioses with most crops, potentially improving their nutrient assimilation and growth. The effects of cultivar and atmospheric CO₂ concentration ([CO₂]) on wheat–AMF carbon‐for‐nutrient exchange remain critical knowledge gaps in the exploitation of AMF for future sustainable agricultural practices within the context of global climate change. We used stable and radioisotope tracers (¹⁵N, ³³P, ¹⁴C) to quantify AMF‐mediated nutrient uptake and fungal acquisition of plant carbon in three wheat (Triticum aestivum L.) cultivars. We grew plants under current ambient (440 ppm) and projected future atmospheric CO₂ concentrations (800 ppm). We found significant ¹⁵N transfer from fungus to plant in all cultivars, and cultivar‐specific differences in total N content. There was a trend for reduced N uptake under elevated atmospheric [CO₂]. Similarly, ³³P uptake via AMF was affected by cultivar and atmospheric [CO₂]. Total P uptake varied significantly among wheat cultivars and was greater at the future than current atmospheric [CO₂]. We found limited evidence of cultivar or atmospheric [CO₂] effects on plant‐fixed carbon transfer to the mycorrhizal fungi. Our results suggest that AMF will continue to provide a route for nutrient uptake by wheat in the future, despite predicted rises in atmospheric [CO₂]. Consideration should therefore be paid to cultivar‐specific AMF receptivity and function in the development of climate smart germplasm for the future.     

Effects of environmental and temporal factors on Glomeromycotina spores in sand dunes along the Gulf of Valencia (Spain)

AMF symbiosis in sand dunes is the key for maintenance of stable vegetation. The main goal of this work was to determine the effects of environmental and temporal factors on AMF living in sand dunes (Gulf of Valencia, Spain). Soil samples were collected seasonally at 6 sites, during 2 yrs, from three habitats and four plant species and the frequency and relative abundance of AMF was examined. AMF were more frequent in mobile than in embryonic dunes, in spring and in sites with old vegetation. Ten AMF species were identified, their distribution depending mainly on the anthropogenic disturbance of the site. Gigasporaceae Cetraspora sp. and Dentiscutata sp. preferred undisturbed soil whereas Diversisporaceae, Glomeraceae and other Gigasporaceae were associated with recently restored soils. All AMF species were found in all plant species although Corymbiglomus corymbiforme was mainly associated with Echinophora spinosa. Our results might be of help for Mediterranean sand dune restoration.     

Niche partitioning in arbuscular mycorrhizal communities in temperate grasslands: a lesson from adjacent serpentine and nonserpentine habitats

Arbuscular mycorrhizal fungi (AMF) represent an important soil microbial group playing a fundamental role in many terrestrial ecosystems. We explored the effects of deterministic (soil characteristics, host plant life stage, neighbouring plant communities) and stochastic processes on AMF colonization, richness and community composition in roots of Knautia arvensis (Dipsacaceae) plants from three serpentine grasslands and adjacent nonserpentine sites. Methodically, the study was based on 454‐sequencing of the ITS region of rDNA. In total, we detected 81 molecular taxonomical operational units (MOTUs) belonging to the Glomeromycota. Serpentine character of the site negatively influenced AMF root colonization, similarly as higher Fe concentration. AMF MOTUs richness linearly increased along a pH gradient from 3.5 to 5.8. Contrary, K and Cr soil concentration had a negative influence on AMF MOTUs richness. We also detected a strong relation between neighbouring plant community composition and AMF MOTUs richness. Although spatial distance between the sampled sites (c. 0.3–3 km) contributed to structuring AMF communities in K. arvensis roots, environmental parameters were key factors in this respect. In particular, the composition of AMF communities was shaped by the complex of serpentine conditions, pH and available soil Ni concentration. The composition of AMF communities was also dependent on host plant life stage (vegetative vs. generative). Our study supports the dominance of deterministic factors in structuring AMF communities in heterogeneous environment composed of an edaphic mosaic of serpentine and nonserpentine soils.     

Organic farming increases richness of fungal taxa in the wheat phyllosphere

Organic farming is often advocated as an approach to mitigate biodiversity loss on agricultural land. The phyllosphere provides a habitat for diverse fungal communities that are important for plant health and productivity. However, it is still unknown how organic farming affects the diversity of phyllosphere fungi in major crops. We sampled wheat leaves from 22 organically and conventionally cultivated fields in Sweden, paired based on their geographical location and wheat cultivar. Fungal communities were described using amplicon sequencing and real‐time PCR. Species richness was higher on wheat leaves from organically managed fields, with a mean of 54 operational taxonomic units (OTUs) compared with 40 OTUs for conventionally managed fields. The main components of the fungal community were similar throughout the 350‐km‐long sampling area, and seven OTUs were present in all fields: Zymoseptoria, Dioszegia fristingensis, Cladosporium, Dioszegia hungarica, Cryptococcus, Ascochyta and Dioszegia. Fungal abundance was highly variable between fields, 10³–10⁵ internal transcribed spacer copies per ng wheat DNA, but did not differ between cropping systems. Further analyses showed that weed biomass was the strongest explanatory variable for fungal community composition and OTU richness. These findings help provide a more comprehensive understanding of the effect of organic farming on the diversity of organism groups in different habitats within the agroecosystem.     

Spring to autumn changes in the arbuscular mycorrhizal fungal community composition in the different propagule types associated to a Mediterranean shrubland

Background and aims

Arbuscular mycorrhizal fungi (AMF) appear differentially represented among propagule forms [intraradical mycelium (IRM) in colonized roots, spores and extraradical mycelium (ERM)]. However, spring to autumn changes in the AMF communities harboured in the different propagule forms has not been studied, being this the aim of the present study.

Methods

A terminal restriction fragment length polymorphism approach was used to monitor, in spring and autumn, the AMF community composition present in the three propagule types associated to five shrub species in a semi-arid Mediterranean environment.

Results

The AMF community composition in roots was significantly different between spring and autumn; however, no significant differences were detected in soil propagules (spores and ERM). Different trends were identified according to the preferential biomass allocation patterns of AMF phylotypes, suggesting different life strategies: those allocating mainly into IRM (belonging to the Glomeraceae), ERM (Diversisporaceae and Gigasporaceae) or spores (Pacisporaceae and Paraglomeraceae).

Conclusions

Differences of AMF taxa in the biomass allocation patterns among propagules are maintained throughout the year. Progress in the knowledge of functional features of AMF communities and their responses to seasonal variations are important for the AMF application in Mediterranean ecosystems.

     

桐-药复合经营模式下泡桐丛枝菌根真菌群落结构特征

采用Illumina MiSeq高通量测序技术,研究江西鄱阳湖周边平原岗地的泡桐纯林及桐-药复合经营模式(泡桐-玉竹、泡桐-麦冬和泡桐-射干)下泡桐丛枝菌根真菌(arbuscular mycorrhizae fungi, AMF)群落结构特征。研究发现,泡桐AMF群落主要由球囊霉科、巨孢囊霉科、无梗囊霉科和多孢囊霉科组成,其中球囊霉科真菌占绝对优势,但不同科的相对丰度在不同经营模式下仍存在差异。与泡桐纯林相比,桐-药复合经营模式会降低泡桐菌根侵染率及AMF群落多样性。只有泡桐-射干经营模式中的泡桐含有多孢囊霉科真菌,且相对多度占2.73%。研究结果表明桐-药复合经营模式下中药材种类的差异会不同程度地改变泡桐AMF的群落结构。这为进一步研究桐-药复合经营模式下泡桐AMF的生态功能和资源利用提供了科学依据。     

Effects of long-term fertilization on AM fungal community structure and Glomalin-related soil protein in the Loess Plateau of China

Arbuscular mycorrhizal fungi (AMF) are crucial for ecosystem functioning, and thus have potential use for sustainable agriculture. In this study, we investigated the impact of organic and mineral fertilizers on the AMF community composition and content of Glomalin-related soil protein (GRSP) in a field experimental station which was established in 1979, in the Loess Plateau of China. Roots and soils were sampled three times during the growing period of winter wheat in 2008. The treatments including: N (inorganic N), NP (inorganic N and P), SNP (straw, inorganic N and P), M (farmyard manure), MNP (farmyard manure, inorganic N and P), and CK (no fertilization). AMF communities of root and soil samples were analyzed using PCR-DGGE, cloning and sequencing techniques; and GRSP content was determined by Bradford assay. Our results indicated that spore density, GRSP, and AMF community varied significantly in soils of long-term fertilization plots at three different wheat growing stages. The effects of wheat growing period on AMF community in roots were much more evident than fertilization regimes. However, the diversity of AMF was low in our study field. Up to five AMF phylotypes appeared in each sample, with the overwhelming dominance of a Glomus-like phylotype affiliated to G. mosseae. GRSP content was correlated positively with organic carbon, total phosphorus, available phosphorus, soil pH, and spore densities, but correlated negatively with soil C/N (P?<?0.05). The results of our study highlight that the richness of AMF in Loess Plateau agricultural region is low, and long-term fertilization, especially amendments with manure and straw, has beneficial effects on accumulation of soil organic carbon, spore density, GRSP content, and AMF diversity. Host phenology, edaphic factors (influenced by long-term fertilization), and habitats interacted to affect the AMF community and agoecosystem functioning. Additionally, soil moisture and pH make a greater contribution than other determined soil parameters to the AMF community dynamics in such a special semi-arid agroecosystem where crops rely greatly on rainfall.     

Arbuscular mycorrhizal fungi (Glomeromycota) communities in tropical savannas of Roraima,Brazil

Savanna vegetation in the northern region of Brazil is jeopardized by several anthropogenic activities including cattle ranching and extensive agriculture, and soil biota of these ecosystems is virtually unknown. The soils in savannas are poor in nutrients, very acidic, and subject to drought, and under these conditions, arbuscular mycorrhizal fungi (AMF) are likely to play a key role on plant nutrition and improving soil structure. In this study, we surveyed AMF communities in five savanna locations in Roraima state, Northern Brazil. AMF species were identified using two approaches: field collected spores and trap cultures. Twenty-three AMF species were identified, including 21 species in field samples, 8 species in trap cultures, of which 15 and 2 were unique to field and trap culture samples, respectively. Gigaspora margarita, Dentiscutata heterogama, and Glomus sp1 were the most frequent species recovered from all locations. AMF communities were dominated by members of Gigasporaceae that accounted for 50 to 87% of the total species richness within each location. Spore numbers differed across locations and ranged from 5 to 25 spores 100 cm^?3 soil. Redundancy analysis indicated that soil organic matter was the only selected predictor among soil parameters and correlated positively with occurrence of Glomus heterosporum. We conclude that savannas in Roraima harbor a high sporulating AMF species richness with communities dominated by members of Gigasporaceae and that organic carbon is an important edaphic factor influencing AMF community composition in this ecosystem.     

Differences in arbuscular mycorrhizal fungal communities associated with sugar maple seedlings in and outside of invaded garlic mustard forest patches

Garlic mustard (Alliaria petiolata) is a Eurasian native that has become invasive in North America. The invasive success of A. petiolata has been partly attributed to its production of allelopathic compounds that can limit the growth of arbuscular mycorrhizal fungi (AMF). Although such effects are well known, specific effects on the richness and community composition of AMF associated with woody species have not been explored. We collected sugar maple (Acer saccharum) seedlings from eight natural forest sites in Ohio and Massachusetts, containing areas either invaded or uninvaded by A. petiolata. We measured AMF root colonization of seedlings, isolated DNA from the roots and performed PCR-TRFLP analysis to assess the richness and community composition of AMF. As expected, we found reduced AMF colonization in A. petiolata invaded patches. A. petiolata did not alter the detected TRF richness, but was associated with significant changes in the composition of AMF communities in half of the sites monitored in each region. Our results suggest that although AMF colonization was reduced in A. petiolata patches, many indigenous AMF communities include AMF that are tolerant to allelopathic effects of A. petiolata.     

Host Identity Impacts Rhizosphere Fungal Communities Associated with Three Alpine Plant Species

Fungal diversity and composition are still relatively unknown in many ecosystems; however, host identity and environmental conditions are hypothesized to influence fungal community assembly. To test these hypotheses, we characterized the richness, diversity, and composition of rhizosphere fungi colonizing three alpine plant species, Taraxacum ceratophorum, Taraxacum officinale, and Polemonium viscosum. Roots were collected from open meadow and willow understory habitats at treeline on Pennsylvania Mountain, Colorado, USA. Fungal small subunit ribosomal DNA was sequenced using fungal-specific primers, sample-specific DNA tags, and 454 pyrosequencing. We classified operational taxonomic units (OTUs) as arbuscular mycorrhizal (AMF) or non-arbuscular mycorrhizal (non-AMF) fungi and then tested whether habitat or host identity influenced these fungal communities. Approximately 14% of the sequences represented AMF taxa (44 OTUs) with the majority belonging to Glomus groups A and B. Non-AMF sequences represented 186 OTUs belonging to Ascomycota (58%), Basidiomycota (26%), Zygomycota (14%), and Chytridiomycota (2%) phyla. Total AMF and non-AMF richness were similar between habitats but varied among host species. AMF richness and diversity per root sample also varied among host species and were highest in T. ceratophorum compared with T. officinale and P. viscosum. In contrast, non-AMF richness and diversity per root sample were similar among host species except in the willow understory where diversity was reduced in T. officinale. Fungal community composition was influenced by host identity but not habitat. Specifically, T. officinale hosted a different AMF community than T. ceratophorum and P. viscosum while P. viscosum hosted a different non-AMF community than T. ceratophorum and T. officinale. Our results suggest that host identity has a stronger effect on rhizosphere fungi than habitat. Furthermore, although host identity influenced both AMF and non-AMF, this effect was stronger for the mutualistic AMF community.     

Mechanical soil disturbance as a determinant of arbuscular mycorrhizal fungal communities in semi-natural grassland

While the effect of disturbance on overall abundance and community composition of arbuscular mycorrhizal (AM) fungi has been researched in agricultural fields, less is known about the impact in semi-natural grasslands. We sampled two AM plant species, Festuca brevipila and Plantago lanceolata, from an ongoing grassland restoration experiment that contained replicated plowed and control plots. The AM fungal community in roots was determined using nested PCR and LSU rDNA primers. We identified 38 phylotypes within the Glomeromycota, of which 29 belonged to Glomus A, six to Glomus B, and three to Diversisporaceae. Only three phylotypes were closely related to known morphospecies. Soil disturbance significantly reduced phylotype richness and changed the AM fungal community composition. Most phylotypes, even closely related ones, showed little or no overlap in their distribution and occurred in either the control or disturbed plots. We found no evidence of host preference in this system, except for one phylotype that preferentially seemed to colonize Festuca. Our results show that disturbance imposed a stronger structuring force for AM fungal communities than did host plants in this semi-natural grassland.     

铜尾矿白羊草各生长阶段根际土壤丛枝菌根真菌群落特征

以北方铜业铜矿峪矿十八河尾矿坝主要恢复植被白羊草为研究对象,分析重金属污染环境下,白羊草不同生长阶段根际土壤中丛枝菌根真菌（Arbuscular mycorrhizal fungi,AMF）群落结构与多样性的变化特征,研究各生长阶段白羊草AMF群落结构与环境因子的相互关系。结果发现,白羊草不同生长阶段根际土壤的理化性质和酶活性均存在显著差异。白羊草各生长阶段根际土壤中具有相同的优势科球囊霉科,但AMF群落组成在各个生长阶段的结构存在明显不同。白羊草各生长阶段主要AMF物种对生态因子的响应表现为：幼苗期根际土壤中球囊霉科主要受土壤养分和碳氮比的影响,分蘖期根际土壤中多样孢囊霉科的主要影响因子为土壤pH,成熟期根际土壤中,双型囊霉科双型囊霉科与土壤过氧化氢酶显著相关,类球囊霉科与土壤脲酶显著正相关。总体看来,白羊草各生长阶段根际土壤AMF群落特征受到的生态因子影响具有明显差异。这有助于进一步认识污染环境下AMF的群落特征及其关键影响因子,为铜尾矿生态恢复过程中发掘和利用菌种资源提供科学依据,从而提高矿区生态修复效率。     

Taxon-specific PCR primers to detect two inconspicuous arbuscular mycorrhizal fungi from temperate agricultural grassland

Taxon-specific polymerase chain reaction (PCR) primers enable detection of arbuscular mycorrhizal fungi (AMF, Glomeromycota) in plant roots where the fungi lack discriminative morphological and biochemical characters. We designed and validated pairs of new PCR primers targeted to the flanking regions of the variable domain 1 of the nuclear ribosomal large subunit RNA gene to specifically detect Acaulospora paulinae and an undescribed member of the Diversisporaceae. These two fungal taxa, sporulating late in soil-trap cultures and showing small, faintly coloured spores and weakly staining intraradical structures, were frequently found in roots of Trifolium repens from a high-input agricultural grassland. The newly developed PCR primers may thus enable studies on two inconspicuous AMF taxa that appear to have been overlooked in previous molecular AMF community analyses and for which no specific PCR primers have been published.     

Long-term legacies and partial recovery of mycorrhizal communities after invasive plant removal

Invasive plants can have strong impacts on native communities, which have prompted intense efforts at invasive removal. However, relatively little is known about how native communities will reassemble after a dominant invader has been removed from the system. Legacy effects of invasive plants on soil microbial communities may alter native plant community reassembly long after the invader is gone. Here we found that arbuscular mycorrhizal fungal (AMF) communities have shown some recovery in experimental plots following 6 years of removal of the invasive Alliaria petiolata (garlic mustard, a species known to degrade AMF communities) in terms of taxonomic richness and community composition. However, despite this recovery, the density of A. petiolata at the beginning of the experiment (in 2004) still correlated with lower AMF richness and altered community composition after 6 years of annual weeding, suggesting long-term legacies of dense A. petiolata infestations. Because native plant and mycorrhizal fungal communities may show interdependence, reassembly of one community may be limited by the reassembly of the other. Restoration may be more effective if practices address both communities simultaneously.     

Fungal community assembly in soils and roots under plant invasion and nitrogen deposition

Fungal community composition in the Anthropocene is driven by rapid changes in environmental conditions caused by human activities. This study examines the relative importance of two global change drivers – atmospheric nitrogen (N) deposition and annual grass invasion – on structuring fungal communities in a California chaparral ecosystem, with emphasis on arbuscular mycorrhizal fungi. We used molecular markers, functional groupings, generalized linear statistics and joint distribution modeling, to examine how environmental variables structure taxonomic and functional composition of fungal communities. Invasive grasses had a lower richness and relative abundance of symbiotic fungi (both AMF and other fungi) compared to native shrubs. We found a higher richness and abundance of rhizophilic (e.g. Glomeraceae) and edaphophilic (e.g. Gigasporaceae) AMF with increasing soil NO₃. Our findings suggest that invasive persistence may decrease the presence of multiple soil symbionts that native species depend on for pathogen protection and increased access to soil resources.     

Mycorrhizal fungal spore community structure in a manipulated prairie

Most plant communities support a diverse assemblage of arbuscular mycorrhizal fungi (AMF). AMF communities have the potential to affect plant community structure and vice versa. We examined AMF sporulation in a 4.5‐ha reconstructed prairie in Eau Claire County, Wisconsin. In fall 2003, the site was planted with varied numbers and combinations of native prairie species from four functional guilds: C₃ grasses/sedges, C₄ grasses, legume, and nonleguminous forbs. We hypothesized that more diverse plant seeding mixtures would promote AMF diversity. To examine the interaction between plant and fungal communities, plots were divided and subplots treated with the fungicide chlorothalonil to suppress AMF, enriched with ammonium nitrate fertilizer, treated with both fungicide and nitrogen, or remained untreated (control). Soil samples were collected during the summers of 2004, 2006, and 2007 from each subplot. Spores of AMF were extracted, identified to species, and enumerated. Initial plant seeding diversity did not significantly influence spore abundance, fungal diversity, plant productivity, or plant richness 4 years after establishment. Fungal species richness was positively, but weakly, correlated with plant productivity (r² = 0.11) and plant richness (r² = 0.09). Fungal community composition changed significantly over time; nitrogen addition, fungicide application, and site characteristics also shaped community composition. After 4 years of treatment, nitrogen and fungicide reduced AMF richness, changed sporulation patterns among AMF taxa, and reduced diversity and productivity in plant communities. Divergence in AMF community is being mirrored by changes in the plant community independent of initial seeding treatments, though causation could not be determined.     

内蒙古大青山灌木铁线莲根围丛枝菌根真菌群落季节动态研究

采用Illumina MiSeq测序技术研究了内蒙古大青山干旱阳坡灌木铁线莲(Clematis fruticosa)根围丛枝菌根真菌(arbuscular mycorrhizal fungi,AMF)群落的季节动态,并利用冗余分析(redundancy analysis,RDA)和Mantel test分析了土壤和植被因子与AMF之间的关系,为进一步探索灌木铁线莲-AMF共生体对不同季节环境变化的响应提供理论依据。结果表明:(1)灌木铁线莲根围AMF孢子密度不存在显著的季节性差异,根系侵染率和丛枝丰度从春季至秋季呈下降趋势。(2)3个季节共检测出163个AMF OTUs(operational taxonomic units),春季、夏季、秋季分别为116OTUs、76OTUs和70OTUs。(3)夏季和秋季的AMF丰富度(实测OTUs数和Chao1指数)以及多样性(Shannon-Wiener指数和Invsimpson指数)显著低于春季,但夏、秋季间无显著异。(4)主成分分析和PERMANOVA分析表明,夏季和秋季的AMF群落组成与春季存在显著差异,而AMF群落组成在夏季与秋季间差异不显著。(5)RDA分析表明,采样季节、植被盖度、植物多样性、土壤含水量和土壤有机质对AMF ShannonWiener指数、Invsimpson指数、Chao1指数和实测OTUs数均产生显著影响;Mantel test分析发现,采样季节是影响AMF群落组成和菌根侵染率的主导因子,但对孢子密度无显著影响,而土壤有机质是影响孢子密度的主导因子。     

Differences of arbuscular mycorrhizal fungal diversity and community between a cultivated land,an old field,and a never-cultivated field in a hot and arid ecosystem of southwest China

We investigated the spore density, species composition, and diversity of arbuscular mycorrhizal fungi (AMF) in a cultivated land (CL), an old field (OF), and a never-cultivated field (NCF), which are located adjacently in a slope in the hot and arid ecosystem of southwest China. AMF spores in the rhizosphere soils of representative plants in the three habitats were extracted by wet-sieving and decanting. A total of 47 taxa of AMF including 31 taxa from the genus Glomus, 8 from Acaulospora, 6 from Scutellospora, 1 from Entrophospora, and 1 from Gigaspora were extracted and identified morphologically. The highest spore density occurred in NCF, slightly lower in OF and lowest in CL, and the Shannon–Wiener index of species diversity was reversed. The dominant species of AMF were different in the three habitats. OF resembled NCF more than CL in AMF spore density, species richness, and community composition, which means that AMF community in the OF has been developing from cultivated land to natural habitat. Cluster analysis based on the similarity in AMF community composition indicated that the distribution of AMF was not random over space and that AMF community composition associated with a given plant species was greatly habitat-convergence. Following the cluster analysis, we hypothesized that the effect of habitats on AMF communities were greater than that of the host preference to AMF. L-F. Li and T. Li contributed equally to this work.     

连作花魔芋软腐病株与健株根域丛枝菌根真菌群落多样性

【目的】解析不同连作年限花魔芋软腐病株、健株根域的丛枝菌根真菌(arbuscular mycorrhizal fungi,AMF)群落多样性。【方法】使用AMF 18S SSU rRNA基因特异引物AMV4.5NF/AMDGR对正茬及连作2年和3年的软腐病株、健株魔芋根系和根际土壤DNA扩增建库,通过高通量测序和生物信息学分析探究魔芋软腐病与其根域AMF群落多样性的关系。【结果】魔芋根系具有明显的AMF菌丝、泡囊和丛枝等结构。在相同连作年限条件下,健株根系AMF总侵染率、侵染强度和孢子密度均显著高于病株(P<0.05);在不同连作年限条件下,病株根系AMF总侵染率和侵染强度随连作年限延长而降低。从所有样品中共鉴定到9属53种AMF,其中有49个已知种和4个新种。球囊霉属(Glomus)和类球囊霉属(Claroideoglomus)是AMF群落的优势属,其AMF种分别占总AMF种数的41.5%和26.4%;丰度最高的Paraglomus sp.VTX00308是所有样品的共有种。连作、软腐病及二者的交互作用显著影响根系AMF群落的Shannon指数和Simpson指数及根际土壤AMF的Chao1指数(P<0.05)。通过丰度差异分析发现6个在连作软腐病发生后丰度差异显著的AMF种(P<0.05);NMDS分析表明,不同连作年限的魔芋软腐病株与健株之间的根域AMF菌种组成、相对丰度和群落结构存在差异。相关性分析表明,软腐病发病率和病情指数与魔芋根系和根际土壤AMF的Shannon指数、根系AMF的Chao1和Simpson指数以及AMF总侵染率、侵染强度和孢子密度极显著负相关(P<0.01)。【结论】比对健株,连作魔芋软腐病株根际土壤AMF孢子密度以及根系AMF侵染率、种数和多样性均降低,其群落结构显著改变。