Conventional and EMG telemetry studies of upstream migration and tailrace attraction of adult Atlantic salmon at a hydroelectric installation on the Exploits River,Newfoundland, Canada

Conventional and electromyogram (EMG) radio telemetry studies have documented occurrence of tailrace attraction and residency, and associated energy cost, for migratory wild Atlantic at a power plant on the Exploits River, insular Newfoundland, Canada. All fish demonstrated some degree of tailrace attraction and turbine discharge was the primary factor resulting in ‘false attraction’. In 2002, residency times were generally less than 1 h, although some fish demonstrated residency between 71 and 118 h. In 2004, after plant refurbishing, fish took from 6 to 11 days to reach the power plant and remained in the tailrace area from 3 to 12 days. Frequent entrances into the tailraces indicated fish were demonstrating a searching behaviour to find the upstream migration route. In 2003 and 2004, EMG data were collected from 3 fish in each year migrating to, and past, the tailraces. An Energy Index was calculated integrating EMG signal and time spent at each location to estimate potential energetic cost. Relatively high-energy expenditure was associated with tailrace attraction and residency in both years. In 2003, fish spent highest energy at the lowest tailrace (first encountered in their migration) while in 2004, there were also high-energy costs associated with a new generating unit. In both years, high EMGs both just below and above the power plant suggested these reaches were arduous and difficult to pass.     

Efforts to aid downstream migrating brown trout (<Emphasis Type="Italic">Salmo trutta</Emphasis> L.) kelts and smolts passing a hydroelectric dam and a spillway

A Wetland Change Model has been developed to identify the vulnerability of coastal wetlands at broad spatial (regional to global (mean spatial resolution of 85 km)) and temporal scales (modelling period of 100 years). The model provides a dynamic and integrated assessment of wetland loss, and a means of estimating the transitions between different vegetated wetland types and open water under a range of scenarios of sea-level rise and changes in accommodation space from human intervention. This paper is an overview of key issues raised in the process of quantifying broad-scale vulnerabilities of coastal wetlands to forcing from sea-level rise discussing controlling factors of tidal range, sediment availability and accommodation space, identification of response lags and defining the threshold for wetland loss and transition.     

Use of telemetry and hydraulic modeling to evaluate and improve fish guidance efficiency at a louver and bypass system for downstream-migrating Atlantic salmon (Salmo salar) smolts and kelts

A fish protection system has been installed in a power canal at a hydroelectric facility on the Exploits River, Grand Falls-Windsor, Newfoundland, Canada. The river has an anadromous Atlantic salmon (Salmo salar)population in the order of 30000 returning adults. A louver and bypass were installed to protect downstream migrating smolt and kelt from entering the penstocks and turbines in the power canal at the generating facility. The efficiency and effectiveness of this protection system has been evaluated since 1997 through a combination of conventional telemetry, use of a digital spectrum processing (DSP) telemetry system with multiple antennae array, floy tagging, and velocity profiling along the louver array and throughout the canal. Initial monitoring in 1997 using conventional telemetry indicated low fish guidance efficiencies (FGEs) in the area of 25% for smolt. In 1998, a DSP telemetry system was installed along the louver array to attempt to identify problem areas where fish were passing through or under the louver. This work also recorded low smolt FGEs in 1998 (24.3%). However, the DSP system did identify sites along the louver array where fish were being lost, and hydraulic measurements suggested fish loss was related to hydraulic turbulence and irregularities in the guidance velocities. In 1999, a scale model of the power canal and bypass system was constructed at the University of Waterloo Engineering Department's Hydraulic Laboratory and a number of structural and operational changes to the system were evaluated. Based on the results of laboratory hydraulic modeling and DSP telemetry, a number of changes were made to the louver and bypass, prior to operation in 1999 and 2000. Monitoring of smolt out migration in 1999 and 2000 indicated a substantial improvement in smolt FGEs to 54.0 and 65.3%, respectively, and the DSP system identified areas where further improvements could be made. This paper demonstrates the utility of a sophisticated telemetry system in the evaluation of fish protection systems and how the technology can be applied towards the optimization of the effectiveness of fish by-passes.     

Hydroelectricity and fish: a synopsis of comprehensive studies of upstream and downstream passage of anadromous wild Atlantic salmon, <Emphasis Type="Italic">Salmo salar</Emphasis>, on the Exploits River,Canada

Microalgal biofilms are associated with considerable variability in the properties of natural sediments, yet little effort has been made to isolate micro-scale spatial and temporal changes in sediment properties caused by the growth of a biofilm. Understanding the changes associated with biofilm growth and quantifying the time scales over which these changes occur is important for developing suitable experimental designs and for understanding how biofilms mediate sediment properties and processes. The development of a microphytobenthic biofilm and associated changes in the sediment was investigated over 45 days in the laboratory. The biogeochemical properties of the sediment: bulk density, water content, chlorophyll a concentration and colloidal carbohydrate concentration were measured on a sub-millimetre scale in the top 2 mm. The erosion threshold was measured with a Cohesive Strength Meter (CSM). Biofilm development was rapid, with changes in the properties occurring after 1 day and a visible film forming after just 3 days. The largest changes in sediment properties tended to occur in the surface 200 μm through time, with some variables also showing a differing response with depth. There were significant changes in water content, chlorophyll a concentration, colloidal carbohydrate concentration and erosion threshold in the surface 2 mm, with a general trend to increase with time. Bulk density was highly variable and did not show a consistent pattern of change with time. Erosion threshold was positively correlated with water content, chlorophyll a and colloidal carbohydrate in the surface 200 μm and these were also positively correlated with each other. Low Temperature Scanning Electron Microscopy (LTSEM) images revealed changes in the surface sediment structure and the formation of a thick multi-layer biofilm. The rapidity of biofilm growth and development and the associated changes to the sediment should be considered when designing experiments that investigate biofilms and properties of sediments and/or that involve biocide treatments or disturbance to the sediment.     

Feeding activity and opercular pressure transients in Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis> L.): application to feeding management in fish farming

Ecological and economical sustainability of marine aquaculture operations depend on proper feeding management. Feed wastage from overfeeding is a source of pollution, represents futile use of precious marine resources, and undermines the economic viability of operations. Additionally, underfeeding reduces growth and fish welfare. Finding an optimal feeding regime in terms of temporal and spatial distribution of the feed ration require intimate knowledge of the individual feeding behaviour of fish sustaining intensive culturing conditions. Fish telemetry has proved to be a valuable tool for studying spatial behaviour in sea cages, however there are currently no practical methods available with respect to detection of actual feed intake in fish on the individual level. The present study investigates pressure transients arising in the opercular cavity of farmed Atlantic salmon (Salmo salar L.) in connection with feeding, and whether such measurements can serve as an indication of feed ingestion. A technical solution to the sensing problem based on a differential pressure transducer is presented along with typical pressure signal traces obtained during feeding in a hard wire tank experiment. Measurements showed considerable variation of sub-ambient pressure transients (1.5 kPa ± 0.95) and their duration (519 ms ± 117), suggesting that the fish modulates its strike intensity depending on the particular feeding situation. Despite variations in scale, opercular pressure waveforms have distinct structural features that repeat between feeding instants. From a signal processing point of view waveforms provide sufficient information with respect to isolation and detection of feeding incidents, which is important with respect to a potential implementation of the sensing principle in a telemetry tag design. Issues regarding development and application of a telemetry system based on this sensing principle are discussed.     

Characterization of Na,K-ATPase genes in Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis>) and comparative genomic organization with rainbow trout (<Emphasis Type="Italic">Oncorhynchus mykiss</Emphasis>)

A combination of molecular and in silico approaches was employed to assemble a survey of Na, K-ATPase genes contained in the ancestrally tetraploid genome of the Atlantic salmon (Salmo salar). Molecular characterization of genomic clones coding for the subunit revealed two single genes (1a and 2) and two pairs of presumably homeologous genes (1b/i-ii and 1c/i-ii). Each of the six genes showed high sequence similarity to isoforms previously isolated from rainbow trout and extensive structural differences relative to putative orthologs in the human genome. In silico analysis of expressed sequence tag (EST) collections indicated that at least five (1a, 1b, 1c, 2, and 3) and four (1a, 1b, 2, and 3b) subunit isoforms are expressed in Atlantic salmon. Meiotic linkage analysis further showed that Na, K-ATPase genes are dispersed throughout the salmon genome, with the exception of two multigene clusters on linkage groups AS-22 and AS-28. Duplicate gene copies for the isoform 1b were assigned to linkage groups with multiple homeologous anchors (AS-22 and AS-23), while 2 duplicates suggested a new homeologous affinity between AS-05 and AS-28. In addition, the comparison of linkage arrangements with rainbow trout also showed that the genomic organization of Na, K-ATPase genes is consistent with the evolutionary conservation of syntenic chromosome regions between these species.Electronic Supplementary Material Supplementary material is available for this article at .     

Movements of adult Atlantic salmon in relation to a hydroelectric dam and fish ladder

The movements of adult Atlantic salmon were recorded as they approached, entered and ascended the pool-and-orifice fish ladder at Pitlochry Dam, Scotland. Thirty-nine returning salmon were captured in the River Tummel by rod-and-line angling, radio-tagged and released near where they were caught. The subsequent movements of each fish were then monitored. An electronic fish counter collected additional data on movements of untagged fish past a fixed point in the ladder. Of the 39 fish that were radio-tagged, 29 individuals were recorded approaching and ascended the ladder. The remaining fish either did not approach the dam (three fish), approached the dam after detailed tracking had ended (two fish), were recaptured by anglers (three fish), or the radio tags failed (two fish). Salmon released earlier in the year delayed longer before first approaching the dam. Delays between first approaching the dam and ascent of the ladder were greater for fish that approached the dam earlier. The majority of salmon visited the ladder entrance more than once (maximum 10 visits) before ascending. Having entered, all but four salmon ascended the fish ladder successfully on their first attempt. The four individuals that failed to do so succeeded on their second attempt. The rate at which salmon ascended the ladder was related directly to temperature. The shortest ascent time of a radio-tagged salmon was 5·25 h. Movements of eight of 11 tagged fish through the ladder ceased with the onset of darkness but continued on the following morning. No radio-tagged fish entered the ladder at temperatures below 9) C. Similarly, few untagged fish were recorded ascending the ladder by the electronic fish counter at water temperatures below 8·5) C. Records from the fish counter indicated that 92% of upstream movements were made during daylight.     

Feeding of wild and hatchery reared Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis> L.) smolts during downstream migration

In general, hatchery salmonid smolts experience higher mortality during migration than wild smolts, which is suggested to be due to domestication effects and that hatchery fish lack experience of the natural environment. However, possible differences in feeding during smolt migration between hatchery and wild smolts have rarely been addressed. We compared the number of feeding smolts and stomach fullness among wild Atlantic salmon smolts, hatchery-reared smolts released as 1-year-old parr, and hatchery-reared smolts released as 2-year-old smolts during their descent to sea in River Tornionjoki. In addition, estimations of prey selection among the smolt groups were conducted. A high proportion of wild smolts and smolts stocked as parr actively fed during the smolt migration. A lower proportion of smolts stocked as smolts was feeding and their stomach fullness were much reduced in comparison with the two other groups. The study also indicated that the feeding of migrating smolts is selective rather than opportunistic. In conclusion, this study suggests that stocked 2-year-old smolts may enter sea with an inferior foraging behaviour and it is a possibility that this may contribute to the observed low post-smolt survival in the Baltic Sea.     

Development of ethologo-physiological differentiation between parrs and smolts of the Atlantic salmon <Emphasis Type="Italic">Salmo salar</Emphasis>

Dynamics of the level of monoamines and their metabolites in the brain of juveniles of the Atlantic salmon Salmo salar is investigated in the initial period of differentiation of the progeny into parrs and smolts. The first differences in the level of metabolism of noradrenaline (NA) and 5-HT arise in the optical tectum of the brain before the beginning of smolting. Appearance of the first signs of smolting in juveniles is accompanied by the increase of differences in the level of activity of HA-and 5-HT-ergic systems in the forebrain and hypothalamus. The first differences in the activity of the DAergic system between parrs and smolts were observed in the period of visible differences in fish coloration. In the same period, considerable differences in the level of adrenaline and noradrenaline in the fish blood were recorded. In experiments on a prolonged exposure of fish to a current of different intensity, it was shown that behavior and physiological response of the fish organism are different: in parrs, the stressogenous response is developed, they stop feeding, weight loss takes place, and they cannot withstand the water flow; smolts adapt to the current using heterogeneity of water movements.     

Damaging effect of the fish pathogen <Emphasis Type="Italic">Aeromonas salmonicida</Emphasis> ssp. <Emphasis Type="Italic">salmonicida</Emphasis> on intestinal enterocytes of Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis> L.)

In fish, bacterial pathogens can enter the host by one or more of three different routes: (a) skin, (b) gills and (c) gastrointestinal tract. Bacteria can cross the gastrointestinal lining in three different ways. In undamaged tissue, bacteria can translocate by transcellular or paracellular routes. Alternatively, bacteria can damage the intestinal lining with extracellular enzymes or toxins before entering. Using an in vitro (Ussing chamber) model, this paper describes intestinal cell damage in Atlantic salmon (Salmo salar L.) caused by the fish pathogen Aeromonas salmonicida ssp. salmonicida, the causative agent of furunculosis. The in vitro method clearly demonstrated substantial detachment of enterocytes from anterior region of the intestine (foregut) upon exposure to the pathogen. In the hindgut (posterior part of the intestine), little detachment was observed but cellular damage involved microvilli, desmosomes and tight junctions. Based on these findings, we suggest that A. salmonicida may obtain entry to the fish by seriously damaging the intestinal lining. Translocation of bacteria through the foregut (rather than the hindgut) is a more likely infection route for A. salmonicida infections in Atlantic salmon.Financial support from the Commission of the European Communities, quality of Life and Management of Living Resources programme, project Q5RT-2000-31656 Gastrointestinal Functions and Food Intake Regulation in Salmonids: Impact of Dietary vegetable Lipids (GUTINTEGRITY) and from Magnus Bergvalls Stiftelse for KS, is acknowledged.This work does not represent the opinion of the European Community, which is thus not responsible for any use of the data presented.     

Upstream passage problems for wild Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis> L.) in a regulated river and its effect on the population

Due to hydropower development, the upstream migration of wild anadromous salmon and brown trout is impaired in many European rivers, causing negative effects on the long-term survival of natural salmonid populations. This study identified problems for Atlantic salmon during upstream migration in a regulated river in northern Sweden, Umeälven (mean flow: 430 m³ s^?1). Tagging from 1995 to 2005 involved radio tags (n = 503), PIT tags (n = 1574) and Carlin tags (n = 573) to study the spawning migration of salmon from the coast past the regulated section of the river to a fish ladder at the dam/spillway 32 km upriver. The results demonstrate that migration success from the coast to the fish ladder varied between 0% and 47% among years, indicating an average loss of 70% of potential spawners. Discharge from the turbines attracted the salmon away from the bypass route. Echo-sounding in the turbine outlet showed that salmon were normally found at 1–4 m depths. They responded with upstream and/or downstream movements depending on flow changes; increased spill in the bypass channel attracted salmon to the bypass. Once in the bypass channel, salmon could be delayed and had difficulties passing the first rapid at high spills. Additional hindrances to upstream migration were found at rapids and the area of the fish ladder, located further upstream in the regulated river section. The average migration duration was 44 days from the estuary to the top of the fish ladder, with large variation among individuals within years. Modelling the salmon population dynamics showed a potential population increase of 500% in 10 years if the overall migration success could be improved from the current 30% to levels near 75%. Consequently improved migration facilities at the regulated river section should be implemented to achieve a long-term sustainability of these threatened anadromous salmonids.     

Dynamics of lipid content during early development of freshwater salmon <Emphasis Type="Italic">Salmo salar</Emphasis> L.

Dynamics of lipid and phospholipid content was studied during early development of freshwater salmon Salmo salar L. from blastodisc formation (3 h) to hatching (108 days) as well as in eggs before fertilization. High and stable content of total lipids including structural phospholipids as well as relatively high content of triglycerides and its slight increase at the time of hatching have been demonstrated, which can indicate their utilization as the main energy source after hatching under conditions of deficient food and low fry activity for some time. Accumulation of a certain level of lipids in eggs before spawning is required for embryonic development and high survival after hatching. The significance of increasing and decreasing levels of structural lipids modulating membrane enzyme activities in metabolic changes before hatching is discussed.     

Etho-biochemical mechanisms of early differentiation in juveniles of the Atlantic salmon <Emphasis Type="Italic">Salmo salar</Emphasis>

The social status of hatchery-reared juveniles of Atlantic salmon Salmo salar at the age of 11–19 months in conditions of lack of shelters was investigated experimentally. It was demonstrated that biochemical differentiation in such juveniles begins at the age of 13 months—one month before the first differences in the social status of fish and four months prior to the beginning of smoltification. The dominants occupy bottom areas with shelters and extrude the subordinates to the water column. The subordinates undergo smoltification or die from aggression of the dominants. Concentrations of dopamine, noradrenalin, and of their metabolites in the brain of fish in the beginning of smoltification were higher in the dominants and, by the end of smoltification, were higher in smolts. The social behavior of fish is considered to be one of the ethological mechanisms of differentiation of salmon juveniles into smolts and parr.     

Reduced anti-predator responses in multi-generational hybrids of farmed and wild Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis> L.)

Cultured organisms undergo genetically-based behavioural changes that may reduce their ability to survive in the wild. This has raised concerns that interbreeding between escaped cultured and wild organisms will generate hybrids exhibiting maladaptive behaviours which may ultimately reduce the fitness of the wild counterpart. We compared anti-predator responses in Atlantic salmon (Salmo salar) from two wild North American populations, the major farmed strain used in regional aquaculture, and their wild-farmed hybrids (F₁, F₂, and wild backcross). Anti-predator responses of fry (age 0+ parr) were measured under common environmental conditions, using a model of a natural predator (belted kingfisher, Ceryle alcyon). Farmed fry exhibited significantly reduced anti-predator responses relative to fry from both wild populations. The anti-predator responses of wild-farmed hybrid fry were intermediate to those of the parental populations (pure farmed or wild). The magnitude by which wild-farmed hybrids differed in anti-predator responses from pure wild fish also depended on the wild population. These results suggest that: (1) the observed behavioural differences have a genetic basis; (2) wild-farmed hybrids have, on average, reduced anti-predator responses relative to wild fish; and that (3) the effects of wild-farmed interbreeding on anti-predator responses will differ between wild populations. Our study is consistent with the general hypothesis that continual farmed-wild interbreeding may have detrimental effects on the fitness of wild organisms.     

Deep-diving of Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis>) during their marine feeding migrations

Data from seven data storage tags recovered from Atlantic salmon marked as smolts were analyzed for depth movements and patterns of deep diving during the marine migration. The salmon mostly stayed at the surface and showed diurnal activity especially from autumn until spring. During the first months at sea the salmon stayed at shallower depths (<100 m). The salmon took short deep dives (>100 m), that were rare or absent during the first summer at sea but increased in frequency and duration especially in late winter. The maximum depth of the dives varied from 419 to 1187 m. Most of dives were short, (<5 h) but could last up to 33 h. The duration of dives increased in late winter until spring and the overall depth and maximum depth per dive increased exponentially over time. The initiation of the dives was more common in evenings and at night, suggesting nocturnal diving. We hypothesized that deep diving is related to feeding of salmon as mesopelagic fish can be important food for salmon during winter.     

Tolbutamide hydroxylation by hepatic microsomes from Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis> L.)

Metabolic transformations of two substrates for human cytochrome P450 (CYP450) 2C9, tolbutamide and diclofenac, were investigated in hepatic microsomes from Atlantic salmon (Salmo salar L.). Tolbutamide hydroxylation followed Michaelis–Menten kinetics. Mean apparent Michaelis–Menten constant (K_m) and maximum reaction velocity (V_max) values for 4-hydroxytolbutamide (TBOH) formation were 0.09 ± 0.031 mM and 49.5 ± 6.03 pmol/min/mg, respectively. Addition of sulfaphenazole, an inhibitor for mammalian CYP2C9, in a range from 1 to 200 μM decreased formation of TBOH in a concentration-dependent manner, but not to 50%. Neither fluconazole, an inhibitor of human CYP2C9, nor ketoconazole, inhibitor of CYP1A and CYP3A in fish, affected TBOH formation. In contrast ellipticine, an inhibitor of CYP1A in fish inhibited TBOH formation with the IC₅₀ value of 12.1 μM. The rate of TBOH formation was competitively inhibited by 100 μM of sesamin in the incubations, but the degree of inhibition did not increase with increased sesamin concentration. Ethoxyresorufin hydroxylase (EROD) activity was inhibited by tolbutamide in a non-competitive manner (inhibition constant K_i = 218 μM). Our data suggest that tolbutamide is metabolized by salmon microsomes with formation of TBOH. CYP1A might be involved in this reaction as suggested by decreased TBOH formation in the presence of ellipticine and decreased EROD activity in the presence of tolbutamide. Incubation of diclofenac with the microsomes yielded no metabolite formation, suggesting that salmon does not possess diclofenac-metabolizing activity.     

Sequencing the genome of the Atlantic salmon (<Emphasis Type="Italic">Salmo salar</Emphasis>)

The International Collaboration to Sequence the Atlantic Salmon Genome (ICSASG) will produce a genome sequence that identifies and physically maps all genes in the Atlantic salmon genome and acts as a reference sequence for other salmonids.     

Protein degradation in the skeletal muscles of parrs and smolts of the Atlantic salmon <Emphasis Type="Italic">Salmo salar</Emphasis> L.

This paper reports a study of the activity of calcium-dependent proteases (calpains) and proteasome in the skeletal muscles of parrs and smolts of the Atlantic salmon Salmo salar L. from the Indera River (the Kola Peninsula). It was demonstrated that the growth rate and protein mass accumulation during smoltification in salmonid fishes are inversely related to the activity of proteases in their muscles. It was noted that decreased protein degradation in the skeletal muscles of salmon juveniles serves as a mechanism ensuring the intensive growth and physiological maturity necessary for migration from the river to the sea.