Patterns in the distribution of fish assemblages in Río Amacuzac,Mexico: influence of abiotic factors and biotic factors

Patterns in spatial and seasonal distribution of fish communities were analyzed in the Río Amacuzac, Mexico, and their relationship to environmental variables and habitat characteristics. The PCA biplot of the study sites and environmental factors showed the first two axes accounting for 52.93% of the variance. The diagram showed the study sites ordination in environmental gradients. The first axis explained variables related to habitat characteristics and temperature (36.30%) and second axis arranged the sites in physicochemical and water quality environmental gradients (conductivity, dissolved oxygen, orthophosphates, ammonium, pH) displaying seasonal variation. Fifteen species were recorded, eight of them are exotic. One new record appeared for the Río Amacuzac: Pterygoplichthys disjunctivus is exotic. Study sites with highest species richness were: 5, 7 and 9 (twelve species each one); while the study sites with low species richness were 1, 2, 3 and 6 (eight species each one). Six of the species were distributed throughout the whole river. Based on the composition of the fish fauna, the study sites form two groups and the analysis of fish species displays three groups according to the Bray–Curtis index. The diagram of the canonical correspondence analysis relates environmental parameters to the abundance of fish species and showed that the first two axes exhibit 78.31% of the explained variance. Species richness had a spatial pattern associated to the introduction of exotic species for ornamental uses. According to the results of the importance value index (IVI), the dominant species were the poecilids Poeciliopsis gracilis and Heterandria bimaculata, small fishes that were introduced in the river. Río Amacuzac has a biotic alteration in the structure of fish communities due to the invasion of exotic species, representing risks to the integrity of the native fish fauna.     

Disentangling the roles of spatial and environmental variables in shaping benthic algal assemblages in rivers of central and northern China

Benthic algae were collected from central and northern Chinese rivers to test the hypothesis that geographic location has significant contributions in shaping algal assemblages. We used Moran’s eigenvector maps (MEM) to model spatial components and variation partitioning to quantify the influences of spatial and environmental variables on regional patterns of algal richness and community composition, respectively. We found that variation in algal richness was attributed to MEM component 2, 8, and 9 and the quadratic term of N–NO₃. Regarding abundance data, latitude, longitude, and MEM component 1, 2, and 7 were important spatial variables. Although P–PO₄, pH, and annual mean temperature were significant environmental variables influencing algal community composition, they were all spatially structured. Among the total explained variance in both algal metrics, spatial proportions were higher than that of environmental variables. We also found that abundant species of Achnanthidium minutissimum, Cocconeis placentula, Cymbella delicatula, Cymbella affinis, Cymbella turgidula, and Synedra ulna displayed clear spatially related patterns. In conclusion, the contributions of spatial and environmental variables to regional variation of algal assemblages are scale-dependent. As for our study scale (~1,000 km), spatial control may be more important. Since spatial effects could obscure local environmental impacts on algal communities, appropriate study scale and statistical methods should be taken into account in algal bioassessment. We recommend inclusion of both algal richness and community composition in study of algal biogeography, due to their different relationships with spatial and environmental variables.     

Multi-scale spatial and partitioning analyses of the reef-fish community composition of the Yucatan fringing reef system

Coral reef and reef-fish communities are complex systems that have spatial structures that are influenced by multiple factors and processes that interact at several scales. We analysed composition data of reef-fish communities in the Yucatan Peninsula fringing reef system using a hierarchical multi-scale survey design to elucidate the origins of the species distribution patterns through multivariate canonical ordination and partitioning analysis. Twelve reef sites were surveyed along the fringing reef system, nested in three sectors, each with distinctive human interests (tourism, fishing, protection). Line transects were placed on reef lagoon, reef front, reef slope and reef terrace habitat for a total of 480 transects. The communities were composed of many rare and some dominant species (e.g., Thalasoma bifasciatum, Acanthurus bahianus, A. coeruleus, Sparisoma aurofrenatum). Redundancy analyses revealed that environmental variables explained between 11% and 22% of the variation in fish community data according to the habitat analysed. Spatial variables, represented by the geographic coordinates of transects, explained a low percentage (2–5%) of variation in the fish community data. Among the environmental variables that significantly explained (P < 0.05) the patterns of variation on the fish community were depth, topographical complexity, and the percentage of the substratum covered by algae, calcareous floor, rock and rubble. Although the total explained variation and proportion of the variation explained by each set of variables were consistently low, most of the effects on the fish community composition data were significant. Explanations are proposed concerning those results. Evincing the distribution patterns on the biological systems of multi-species as well as the causes that shape them is key for conservation planning and essential in highly threatened regions, such as the Caribbean coast of the Yucatan Peninsula.     

Landscape variables influence taxonomic and trait composition of insect assemblages in Neotropical savanna streams

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Spatial and temporal variation of fish assemblage in two intermittent streams in north‐western Zimbabwe

This study examined the spatial and temporal variation in fish assemblage composition within two intermittent streams in north‐western Zimbabwe. Eight sites were sampled during three different periods of flow. Twenty‐five species in eight families, dominated by cichlids and cyprinids, were collected. Redundancy analysis (RDA) was used to explore the relationship between species and their environmental correlates. According to variation partition, 68.1% of assemblage variation was explained by both habitat and temporal variables. Most species were associated with large pools, whereas small species were associated with habitats that had gravel and boulders. The temporal aspect suggested a pattern associated with high catch per unit effort (CPUE) for the mormyrids, Clarias gariepinus and Labeo altivelis, during the early rain period. By comparison, the late rain period was associated with high CPUE for Labeo cylindricus, Labeobarbus marequensis, Chiloglanis neumanni and Oreochromis mortimeri, whereas the rest of the species had high CPUE during both the late rain and dry periods. The assemblage composition was more diverse during the late rain period. Refuge availability during the dry period appeared to be essential for the assemblage of the intermittent streams. Protection of these temporal habitats is therefore important in conserving fish assemblages within intermittent streams of the Lake Kariba area.     

阿拉善荒漠啮齿动物集合群落实证研究

当生态学家探求在破碎化的栖息地中,群落物种的共存机制、多样性、局域尺度的性质和过程被放到更广阔的时空框架内时,就出现了"集合群落"这一概念。Leibold提出了集合群落概念,他们将一个集合群落定义为局域群落集,这些群落由各个潜在的相互作用的物种的扩散连接在一起。集合群落理论描述了那些发生在集合群落尺度上的过程,并且提出思考关于物种相互作用的新方法。集合群落概念为群落生态学提供了一个新的革命性的范式,集合群落研究的最基本问题是同一系统中多物种共存的机理、多样性的形成原因与维持机制。该范式强调区域范围内群落中的综合变异,强调环境特证和栖息地之间通过扩散调节的生物相互作用和空间变化。Leibold等提出了解释集合群落结果理论上的4个生态范式,即(1)中性理论;(2)斑块动态理论;(3)物种分配理论;(4)集团效应理论。之后有大量有关检验这4种生态理论的研究,但是有关陆地脊椎动物系统的集合群落的研究较少。2010—2012年,通过在内蒙古阿拉善荒漠景观中的8个固定样地中,对啮齿动物、栖息地环境因子进行调查。利用冗余分析和偏冗余分析,评估环境特征和空间特征对物种组成的影响。结果表明,环境特征独自解释72.8%的啮齿动物物种组成变化,空间特征独自解释33.8%的物种组成变化,环境特征和空间特征共同解释86.5%的啮齿动物物种组成变化,结果显著(P=0.032);去除环境特征之后,空间特征解释13.7%的变化(P=0.246),结果不显著;去除空间特征之后,栖息地变化解释52.7%的变化(P=0.016);环境特征和空间特征的交互作用解释20.1%的物种组成的变化,该区域啮齿动物群落构成集合群落,物种共存中环境特征起着主导作用,由物种分配理论解释该集合群落结构。     

长江中下游湖群大型底栖动物群落结构及影响因素

长江中下游地区是我国淡水湖泊分布最为密集的区域,其中面积大于10 km²的湖泊总面积占相同级别中国淡水湖泊总面积的51.3%。目前对本地区湖泊大型底栖动物研究主要是关于单个湖泊或几个湖泊之间的比较,将区域内湖泊作为一个整体来分析的研究较少。为揭示现阶段长江中下游浅水湖泊底栖动物群落现状及其主要影响因素,于2008年和2009年夏季对本地区5个湖群69个湖泊大型底栖动物和水化学进行了调查,并分析区域过程和局域环境条件在决定该地区底栖群落结构中的相对重要性。结果表明水体矿化度、电导率及氮磷指标在不同湖群间具有显著差异,而高锰酸盐指数、叶绿素a及营养状态指数无显著差异。密度方面,以寡毛类和摇蚊幼虫为优势类群的湖泊共46个,占总数量的66.7%,以螺类为优势类群之一的湖泊16个,占总数量的23.2%;生物量方面,以螺类为优势的湖泊数量最多(33个),占总数量的46.4%,但以寡毛类和摇蚊幼虫占优势的湖泊亦有27个,占总数量的39.1%,双壳类仅在9个湖泊占据优势。典范对应分析结果表明该地区底栖动物群落结构是局域环境条件和区域过程共同作用的结果,两类因子共解释了33.9%的底栖动物群落变异,其中局域环境因子占被解释量的48.1%,空间变量占35.4%。空间变量较高的解释量表明对整个长江中下游地区湖泊而言,区域过程对底栖动物的分布也起着非常重要的作用。     

Spatial segregation among age classes in cave salamanders: habitat selection or social interactions?

Within species, individuals with different sexes, morphs and age classes often show spatial segregation. Both habitat selection and social processes have been proposed to explain intraspecific spatial segregation, but their relative importance is difficult to assess. We investigated spatial segregation between age classes in the cave salamander Hydromantes (Speleomantes) strinatii, and used a hypothetico-deductive approach to evaluate whether social or ecological processes explain segregation pattern. We recorded the location and age class of salamanders along multiple caves; we measured multiple microhabitat features of different sectors of caves that may determine salamander distribution. We assessed age-class segregation, and used generalized mixed models and an information-theoretic framework, to test if segregation is explained by social processes or by differences in habitat selection. We found significant age-class segregation, juveniles living in more external cave sectors than adults. Multiple environmental features varied along caves. Juveniles and adults showed contrasting habitat selection patterns: juveniles were associated with sectors having high invertebrate abundance, while adults were associated with scarce invertebrates and low temperature. When the effect of environmental features was taken into account, the relationship between juveniles and adults was non negative. This suggests that different habitat preferences, related to distinct risk-taking strategies of age classes, can explain the spatial segregation. Juveniles require more food and select more external sectors, even if they may be risky. Conversely, adults may trade off food availability in favour of safe areas with stable micro-climate.     

Fragmentation and pre-existing species turnover determine land-snail assemblages of tropical rain forest

Aim The main aims of the study were: (1) to investigate the effect of fragment age in relation to other patch‐ and landscape‐scale measures of forest fragmentation, and (2) to assess the relative importance of fragmentation, habitat degradation (i.e. degradation caused by selective logging and past shifting cultivation) and putative pre‐existing species turnover in structuring current land‐snail assemblages. Location South‐western Sri Lanka. Methods The land‐snail fauna was sampled using standardized belt transects. Fifty‐seven transects were sampled in 21 lowland rain forest fragments (c. 1–33,000 ha). The spatial arrangement of fragments in the study area was explicitly considered in an effort to take into account the non‐random nature of fragmentation and degradation and the possibility that current species composition may reflect patterns of species turnover that existed prior to fragmentation. The data set of 57 land‐snail species and 28 environmental and spatial variables was analysed using canonical correspondence analysis and partial canonical correspondence analysis. Results Fragment age, mean shape complexity (i.e. a landscape‐scale measure of shape complexity), altitude, and the spatial variables x (longitude), y (latitude) and y² explained significant variation in land‐snail species composition. None of the three nominal variables quantifying habitat degradation was significantly correlated with variation in species composition. The independent effects of fragment age and mean shape complexity were similar. The combined effect of the spatial variables alone was larger than the independent effects of fragment age, mean shape complexity or altitude, but was of the same order of magnitude. The total variation explained by the spatial variables was comparable to the total non‐spatial variation accounted for by fragment age, mean shape complexity and altitude. Main conclusions Fragment age was found to be one of only two key determinants (the other was shape complexity at the landscape scale) driving fragmentation‐related changes in community composition. The influence of pre‐fragmentation patterns of species turnover on assemblage structure can be stronger than the effects of fragmentation measures, such as age, and may override the effects of forest degradation. Thus, strong patterns of pre‐existing turnover may potentially confound interpretation of the effects of forest fragmentation and degradation.     

Benthic, Drifting and Marginal Macroinvertebrate Assemblages in a Lowland River: Temporal and Spatial Variations and Size Structure

Aquatic macroinvertebrates living in anastomosing lowland rivers use different habitats and respond differently to the hydrological regime. In this paper, the structure and composition of benthic, drifting and marginal macroinvertebrate assemblages are analyzed in the lowland river Ctalamochita (Córdoba, Argentina). The assemblages were studied in an annual cycle; a comparison among the composition of benthos, drift and marginal fauna was carried out; and size structure of the assemblages was characterized. Samples were obtained from two sites: a rural and an urban site. In total 73 taxa of aquatic macroinvertebrates were collected. Benthos was characterized by Chironomidae and Oligochaeta; marginal fauna was mainly constituted by Coleoptera, Heteroptera, Decapoda, the Trichoptera Nectopsyche sp., Ephemeroptera and Odonata. Drifting assemblage was composed by macroinvertebrates from local and remote upstream benthos, and from the marginal zone. Marginal fauna diversity was higher than benthos and drift. Total biomass of the assemblages pooled together was relatively equitably among size classes. Larger size classes consisted of organisms from the marginal zone whereas the smallest ones were composed by benthic and drifting organisms. In the study area there is habitat partitioning in the lateral dimension of the river. Marginal fauna was more diverse due to the asymmetry of transport and deposit processes, which generate a heterogeneous habitat in the bankside. The relation between fine substrate and high current velocity determines an unstable habitat in the central channel, which makes colonization by benthic macroinvertebrates difficult.     

Environmental factors influencing urchin spatial distributions on disturbed coral reefs (New Caledonia, South Pacific)

Few works have examined the relative contributions of habitat variables to the distribution of coral reef urchins. In the present study, the spatial distribution of two common urchin species (Diadema setosum and Echinometra mathaei) was studied in the fringing reefs of two urban bays in New Caledonia (South Pacific). Urchins were surveyed at 105 stations with contrasted habitat structure/anthropic disturbance levels; 32 environmental variables (water/sediment characteristics, reef structuring species) were considered. Moderate densities were generally observed at station scale (mean 0.5 individuals m^− 2). The combination of univariate and multivariate techniques highlighted patchy distributions for Diadema as well as Echinometra, with distinct species/habitat associations; environmental gradients occurring within the bays did not seem to influence the species patterns. For Diadema, the spatial variability was better explained by sediment type than by biotic cover; increasing densities occurred across habitats with larger sediment sizes and decreasing coral complexity/macrophytes cover. In contrast, the distribution of E. mathaei exhibited weak relationships with habitat variables. In coral reefs, small-scale heterogeneity may thus be responsible for most of urchins spatial variability.     

Diatom flora in Mediterranean streams: flow intermittency threatens endangered species

In the context of global environmental changes, Mediterranean rivers are considered highly endangered. Temporal and spatial increases of the dry stretches during the summer lead to the loss of river tridimensional connectivity, which represents a major threat for freshwater biodiversity. In this study, we aimed at exploring the response of diatom communities to summer droughts by analyzing taxonomical composition, specific ecological requirements, ecological guilds and percentages of endangered species. The evolution of diatom communities was monitored under both intermediate and intermittent flows, with traditional and innovative sampling procedures, i.e. collecting diatoms from transects and microhabitats, respectively. Microhabitats differed in terms of water velocity, substrate, isolation and presence of macrophytes. Diatom flora was mainly composed of β-mesasoprobous taxa. We highlighted an increase of species considered as aerophilous and planktonic in sites characterized by intermittent flow. In general, ecological guilds did not respond to hydrological disturbance as expected. Statistical models identified the maintenance of a minimum of 0.20 m/s flow velocity as the main factor influencing the abundance of endangered species. Conversely, flow instability, lentification and habitat fragmentation represented the major threats for endangered species. In conclusion, diatoms can provide useful information to improve river management practices when faced with an increasing water scarcity scenario. Water stability and river habitat heterogeneity strongly favor the presence of endangered diatom species. In the absence of these conditions, isolated pools surrounded by dry riverbed are very important habitats to be preserved, representing the only refugia for benthic diatom communities during summer.     

Spatial variation in insect community and species responses to habitat loss and plant community composition

Several experimental studies have examined species responses to manipulations of habitat area and spatial arrangement, but plant composition and spatial variation in species distributions also affect animal responses to habitat alteration. We used an experimental approach to study the combined effects of habitat area, edge, and plant community composition on the spatial structure of insect species richness and composition. The abundance of three guilds (herbivores, predators and parasitoids) and individual species were also analyzed. Habitat patches were created that differed in area and edge by selectively mowing portions of 15 m×15 m plots in a 1.7-ha old field. Spatial and environmental variables were used to predict insect responses in separate multiple regression and ordination models. The variation in species responses due to spatial and environmental variables was then partitioned by combining these variables into an overall regression or ordination. Spatial and environmental variables contributed similar percentages to the total variance in insect species richness, abundance or composition. No significant effects of habitat area were observed in any response variable. Herbivore abundance showed positive responses to legume or grass cover, as well as spatial variation that was unrelated to environmental variables. Predators and parasitoids had greater effects of plant species richness and habitat edge, and less unexplained spatial variation. Individual species differed in their responses to plant variables, depending on host specialization or intraspecific aggregation. Our study highlights the importance of plant community composition and spatial variation apart from environmental variables. Spatial variation stems both from species responses to environmental features as well as species differences in habitat specialization and intraspecific aggregation.     

The contribution of abiotic and biotic factors to spatial and temporal variation in population density of the least killifish, Heterandria formosa

We report the results of a long-term examination of variation in adult density in the least killifish, Heterandria formosa, and the associations among adult density and a variety of ecological factors. We used data from 11 populations of H. formosa in Northwest Florida, collected between 2000 and 2010, to examine the relationships among temporal and spatial variation in adult density and (1) the composition of the aquatic fauna community among habitats (springs, ponds, and tidal marshes) where H. formosa are found, (2) an index of predation pressure and (3) the sampling season, distance from shore (cm), water depth (cm), and aquatic vegetation cover (%) in throw traps at each sampling event. We found clear evidence that adult densities of H. formosa vary widely but consistently among populations, with greater spatial variation than temporal variation in density estimates. Site identity explained most of the variation in density among populations, and there was no long-term consistent association of variation in density with different habitats; sites of the same habitat type were as likely to have characteristically different densities as were sites of different habitat types. Average adult densities of H. formosa increased as aquatic vegetation cover increased and as the index of predation pressure decreased, however assemblage structure was not a strong predictor of density. These results show that despite marked community, abiotic and biotic distinctions between habitat types, location-specific variation was the predominant signal in these data.     

Habitat preferences of sympatric sandgrouse during the breeding season in Spain: a multi-scale approach

Predictive species’ distribution models may answer ecological questions about habitat selection, co-occurrence of species and competition between them. We studied the habitat preferences and segregation of two sympatric species of declining sandgrouse, the black-bellied sandgrouse (Pterocles orientalis) and the pin-tailed sandgrouse (Pterocles alchata), during the breeding season. We developed predictive models that related sandgrouse presence to environmental variables at three different spatial levels: large geographical, landscape and microhabitat scales. At the large geographical scale, differences between sandgrouse distributions, in the Iberian Peninsula, seem to be explained mainly in terms of bioclimatology: pin-tailed sandgrouse appear to be a more thermophilous species and occupy warmer sites usually located in flatter areas. At the landscape spatial level, in those areas that exhibit environmental conditions allowing for both species’ co-existence at a large geographical scale, black-bellied sandgrouse appear to be more tolerant to environmental variation than pin-tailed sandgrouse. At the microhabitat level, however, differences between species could be related to different flocking behaviour as a consequence of different sensitivities to vegetation structure and predators. Thus, the observed spatial distribution patterns are the result of different ecological factors that operate at different spatial levels. Conservation guidelines for these species should therefore consider their habitat preferences at large geographical, landscape and microhabitat scales.     

Environmental factors prevail over dispersal constraints in determining the distribution and assembly of Trichoptera species in mountain lakes

Aiming to elucidate whether large‐scale dispersal factors or environmental species sorting prevail in determining patterns of Trichoptera species composition in mountain lakes, we analyzed the distribution and assembly of the most common Trichoptera (Plectrocnemia laetabilis, Polycentropus flavomaculatus, Drusus rectus, Annitella pyrenaea, and Mystacides azurea) in the mountain lakes of the Pyrenees (Spain, France, Andorra) based on a survey of 82 lakes covering the geographical and environmental extremes of the lake district. Spatial autocorrelation in species composition was determined using Moran's eigenvector maps (MEM). Redundancy analysis (RDA) was applied to explore the influence of MEM variables and in‐lake, and catchment environmental variables on Trichoptera assemblages. Variance partitioning analysis (partial RDA) revealed the fraction of species composition variation that could be attributed uniquely to either environmental variability or MEM variables. Finally, the distribution of individual species was analyzed in relation to specific environmental factors using binomial generalized linear models (GLM). Trichoptera assemblages showed spatial structure. However, the most relevant environmental variables in the RDA (i.e., temperature and woody vegetation in‐lake catchments) were also related with spatial variables (i.e., altitude and longitude). Partial RDA revealed that the fraction of variation in species composition that was uniquely explained by environmental variability was larger than that uniquely explained by MEM variables. GLM results showed that the distribution of species with longitudinal bias is related to specific environmental factors with geographical trend. The environmental dependence found agrees with the particular traits of each species. We conclude that Trichoptera species distribution and composition in the lakes of the Pyrenees are governed predominantly by local environmental factors, rather than by dispersal constraints. For boreal lakes, with similar environmental conditions, a strong role of dispersal capacity has been suggested. Further investigation should address the role of spatial scaling, namely absolute geographical distances constraining dispersal and steepness of environmental gradients at short distances.     

Capturing cross-scalar variation of habitat selection with grid sampling: an example with hazel grouse (Tetrastes bonasia L.)

The objective of this study was to investigate a grid-based sampling design to determine the cross-scalar selection of habitat by a territorial animal species: the hazel grouse (Tetrastes bonasia L.). In each of three sites with increasing hazel grouse nest site density, three lattice grids were used to measure both the habitat variables and the species occurrence in 100 30?×?30 m cells. We calculated the average values for habitat variables, as well as use versus non-use by the species, at three spatial scales: small (1?×?1 cell), intermediate (2?×?2 cells) and large (3?×?3 cells). Generalised linear mixed models were integrated into a method of variation and hierarchical partitioning and used to assess the relationship between the habitat variables and the species preferences at each scale. In all scales, species selection was associated with ground layer composition. Selection was also associated with the composition of the woody layer and negatively associated with dominance of tor grass (Brachypodium rupestre (Host) Roem. & Schult.) at the two larger scales. Both litter cover and thinning contributed positively to the habitat selection at the two smaller scales. The other variables were significant only at one scale or explained a relatively low proportion of the variation at multiple scales. Neither the management nor the stand structure variables played a significant independent role across scales when compared with ground layer variables. The total variation explained was highest (ca. 90 %) at the large scale. This finding indicates the possibility of obtaining cross-scalar hazel grouse preferences from grid-based sampling, provided that spatial autocorrelation in the data is handled appropriately.     

Habitat segregation by fishes in western Taiwan rivers

Habitat segregation has been recognized as an important means of resource partitioning in river fish assemblages. Association between river fishes and habitat features were identified through principal component analysis (PCA). Fish and habitat data were collected in the Kaoping, Tsengwen, Choshui, and Tatu rivers from July 1997 to June 1999 in western Taiwan. Electrofishing was used to collect fishes in grids, and environment variables in the sampled areas were measured immediately after sampling. The first four PCs of depth, velocity, cover, substrate and water temperature variables explained 92.3% of the total variance in habitat characteristics. Varicorhinus barbatulus, Acrossocheilus formosanus and Tilapia mossambica in the upper right quadrant, indicated preference for deep‐water habitat. Species usually associated with shallow water habitat include several minnow species. Rhinogobius brunneus, Hemimyzon formosanum, Sinogastromyzon puliensis and Crossostoma lacustre distribution is centred in the upper and lower left, indicating preference for shallow water. Principal component (PC) scores on Zacco pachycephalus, Abbottina brevirostris and Hemiculter leucisculus appeared to have no special preference. Differences in habitat use exhibited by these species may be related to success in finding food and avoiding predators.     

Biodiversity of stream insects in the Malaysian Peninsula: spatial patterns and environmental constraints

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