Binding studies with mutants of Zif268. Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex.

The Zif268 zinc finger-DNA complex has served as a model system for understanding how Cys2His2 type zinc fingers recognize DNA. Structural studies of the Zif268-DNA complex revealed that residues at four positions in the alpha helix of each zinc finger play key roles in recognition, but there has been no information about the precise contributions of individual residues. Here we report the results of binding studies involving five mutants of Zif268 that have changes in the base-contacting residues of finger one. These studies let us evaluate the contributions that Arg18 (position -1 of the alpha helix), Asp20 (position 2), Glu21 (position 3), and Arg24 (position 6) make to the overall energy of DNA binding. Our results confirm the important role played by these arginines. By comparing the affinities of the wild type and mutant peptides for various sites, we also prove that Asp20 and Glu21 play important roles in determining binding site specificity.     

Zif268的锌指DNA结合区在大肠杆菌中的功能性表达

锌指蛋白是最大的蛋白家族,是识别核酸最常见的、最有效的结构元件。通过选择合适的表达载体及诱导表达条件,实现了小鼠转录因子Zif268的锌指DNA结合区在大肠杆菌中的部分可溶性表达。凝胶迁移率移动试验证实纯化的可溶部分锌指DNA结合区可以特异性识别、结合其天然靶序列,提示锌指DNA结合区在大肠杆菌中得到了功能性表达。锌指DNA结合区在大肠杆菌中的功能性表达成功为锌指蛋白DNA相互作用的胞内遗传筛选模型的建立奠定了基础。     

转录因子ChREBP在葡萄糖诱导生脂中的作用

葡萄糖既是动物主要的能量来源和脂肪合成的底物,也可通过转录因子碳水化合物反应元件结合蛋白（ChREBP）调控脂肪生成。ChREBP是具有碱性螺旋-环-螺旋亮氨酸拉链（bHLH/ZIP）结构的转录因子,可激活糖酵解和脂肪生成相关基因的转录表达,在机体脂质代谢和葡萄糖稳态的调控中起重要作用。对ChREBP调控机制的认识,可为肥胖及相关代谢综合征的治疗和肉用动物体脂沉积的营养调控提供基础。本文就有关ChREBP表达、反式激活活性的调控,以及与其他调控因子的相互作用等方面的研究新进展作一综述。     

转录因子Nrf2在肝脏疾病中的作用

NF-E2相关因子2(nuclear erythroid 2-related factor 2,Nrf2)是一种能调节肝脏中大量解毒和抗氧化防御基因表达的重要转录因子.氧化应激与各种形式的肝损伤有密切的关系.Nrf2由亲电体压力或氧化应激激活,并通过结合抗氧化反应元件(antioxidant response element,ARE)诱导其靶基因,从而对细胞产生保护作用.因此,Nrf2通路在肝脏疾病中的作用已被深入研究.多种动物模型研究结果表明,Nrf2通路通过靶基因表达,在对抗病毒性肝炎、药物性肝损伤、酒精性肝病、非酒精性脂肪肝及肝癌方面表现出了不同的生物功能.根据Nrf2及其信号通路在对抗肝损伤中产生保护作用的相关文献,本文综述并讨论了其作为治疗肝损伤的药物作用靶点方面可能的应用前景.     

转录因子GATA-2在脊椎动物发育过程中的作用

GATA-2是对外胚层和中胚层发育至关重要的转录因子,它属于具有保守锌指结构的GATA转录因子家族.GATA家族包括6个成员:分别命名为GATA-1～GATA-6.最新研究表明,GATA-2不仅存在于胚胎器官,还对成体造血细胞系、神经系统、垂体和泌尿生殖系统中细胞的功能和维持都必不可少.本文旨在通过对GATA-2的功能研究进展进行综述,探讨GATA-2在生殖系统中的作用机制,以期更广泛地了解GATA-2基因在生物发育过程中的作用及对相关基因的调控机制,从而为攻克人类相关疾病提供理论依据.     

Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.

Structural and biochemical studies of Cys(2)His(2) zinc finger proteins initially led several groups to propose a "recognition code" involving a simple set of rules relating key amino acid residues in the zinc finger protein to bases in its DNA site. One recent study from our group, involving geometric analysis of protein-DNA interactions, has discussed limitations of this idea and has shown how the spatial relationship between the polypeptide backbone and the DNA helps to determine what contacts are possible at any given position in a protein-DNA complex. Here we report a study of a zinc finger variant that highlights yet another source of complexity inherent in protein-DNA recognition. In particular, we find that mutations can cause key side-chains to rearrange at the protein-DNA interface without fundamental changes in the spatial relationship between the polypeptide backbone and the DNA. This is clear from a simple analysis of the binding site preferences and co-crystal structures for the Asp20-->Ala point mutant of Zif268. This point mutation in finger one changes the specificity of the protein from GCG TGG GCG to GCG TGG GC(G/T), and we have solved crystal structures of the D20A mutant bound to both types of sites. The structure of the D20A mutant bound to the GCG site reveals that contacts from key residues in the recognition helix are coupled in complex ways. The structure of the complex with the GCT site also shows an important new water molecule at the protein-DNA interface. These side-chain/side-chain interactions, and resultant changes in hydration at the interface, affect binding specificity in ways that cannot be predicted either from a simple recognition code or from analysis of spatial relationships at the protein-DNA interface. Accurate computer modeling of protein-DNA interfaces remains a challenging problem and will require systematic strategies for modeling side-chain rearrangements and change in hydration.     

Role of STAT3 Transcription Factor in Pathogenesis of Bronchial Asthma

Biochemistry (Moscow) - Bronchial asthma is a heterogeneous chronic inflammatory disease of airways. The studies of molecular and cellular mechanisms of bronchial asthma have established that a...     

Instrumental Learning in Neodecorticate Rabbits

ALTHOUGH subtotal neocortical lesions seem not to impair an animal's ability to acquire a new habit in classical (Pav-lovian) conditioning procedures^1,2, instrumental learning is retarded by this surgical, procedure in proportion to the mass of tissue removed^3–6. Little is known, however, about an animal's ability to benefit from formal training procedures if the entire neocortex is removed. Earlier experiments have shown that a decorticate can acquire simple salivary^7,8, leg-flexion⁹, or diffuse^10,11 Pavlovian conditional responses and Bromiley¹² has reported a restrained, decorticate dog which produced leg flexions to avoid shock, although only in favourable conditions. A more recent study¹³, involving rats with 90% ablations of neocortex, showed that Pavlovian autonomic conditioning was little affected by cortical lesions which abolished instrumental learning of the same responses. I have investigated the possibility of establishing the instrumental response of lever pressing for food in freely moving, totally neodecorticated rabbits in conditions of prolonged training.     

A Role for Transcription Factor STAT3 Signaling in Oncogene Smoothened-driven Carcinogenesis

Activation of the Hedgehog (Hh) pathway is known to drive development of basal cell carcinoma and medulloblastomas and to associate with many other types of cancer, but the exact molecular mechanisms underlying the carcinogenesis process remain elusive. We discovered that skin tumors derived from epidermal expression of oncogenic Smo, SmoM2, have elevated levels of IL-11, IL-11Rα, and STAT3 phosphorylation at Tyr⁷⁰⁵. The relevance of our data to human conditions was reflected by the fact that all human basal cell carcinomas examined have detectable STAT3 phosphorylation, mostly in keratinocytes. The functional relevance of STAT3 in Smo-mediated carcinogenesis was revealed by epidermal specific knockout of STAT3. We showed that removal of STAT3 from mouse epidermis dramatically reduced SmoM2-mediated cell proliferation, leading to a significant decrease in epidermal thickness and tumor development. We also observed a significant reduction of epidermal stem/progenitor cell population and cyclin D1 expression in mice with epidermis-specific knockout of STAT3. Our evidence indicates that STAT3 signaling activation may be mediated by the IL-11/IL-11Rα signaling axis. We showed that tumor development was reduced after induced expression of SmoM2 in IL-11Rα null mice. Similarly, neutralizing antibodies for IL-11 reduced the tumor size. In two Hh-responsive cell lines, ES14 and C3H10T1/2, we found that addition of Smo agonist purmorphamine is sufficient to induce STAT3 phosphorylation at Tyr⁷⁰⁵, but this effect was abolished after IL-11Rα down-regulation by shRNAs. Taken together, our results support an important role of the IL-11Rα/STAT3 signaling axis for Hh signaling-mediated signaling and carcinogenesis.