The prevalence and genomic characteristics of hepatitis E virus in murine rodents and house shrews from several regions in China

Background

Urban rodents and house shrews are closely correlated in terms of location with humans and can transmit many pathogens to them. Hepatitis E has been confirmed to be a zoonotic disease. However, the zoonotic potential of rat HEV is still unclear. The aim of this study was to determine the prevalence and genomic characteristics of hepatitis E virus (HEV) in rodents and house shrews.

Results

We collected a total of 788 animals from four provinces in China. From the 614 collected murine rodents, 20.19% of the liver tissue samples and 45.76% of the fecal samples were positive for HEV. From the 174 house shrews (Suncus murinus), 5.17% fecal samples and 0.57% liver tissue samples were positive for HEV. All of the HEV sequences obtained in this study belonged to Orthohepevirus C1. However, we observed a lower percentage of identity in the ORF3 region upon comparing the amino acid sequences between Rattus norvegicus and Rattus losea. HEV derived from house shrews shared a high percentage of identity with rat HEV. Notably, the first near full-length of the HEV genome from Rattus losea is described in our study, and we also report the first near full-length rat HEV genomes in Rattus norvegicus from China.

Conclusion

HEV is prevalent among the three common species of murine rodents (Rattus. norvegicus, Rattus. tanezumi, and Rattus. losea) in China. HEV sequences detected from house shrews were similar to rat HEV sequences. The high identity of HEV from murine rodents and house shrews suggested that HEV can spread among different animal species.

     

Airborne fungal spore distribution in Bangkok,Thailand: correlation with meteorological variables and sensitization in allergic rhinitis patients

Information about airborne fungal spore is crucial for health risk assessment and management, especially for patients with allergy and asthma. Nonetheless, such data are rarely available from certain areas of the world, including Southeast Asia. The aim of this study was to gain updated information about airborne fungal spore in Bangkok, the capital city of Thailand. A survey was conducted at five sampling sites in Bangkok, using the Rotorod Sampler^® for a period of 1 year. High concentrations of spores were found all year with the peak between August and November. The most prominent spore types were Cladosporium, Nigrospora, Puccinia, Aspergillus/Penicillium, and Fusarium. The spore concentrations were positively and significantly correlated with the amount of rainfall and relative humidity, reaching the maximum level in September. Sensitization rates to Cladosporium, Penicillium, and Aspergillus among Thai atopic patients were approximately 16.6, 13.6, and 13.0%, respectively.     

Influence of the coral reef assemblages on the spatial distribution of echinoderms in a gradient of human impacts along the tropical Mexican Pacific

Fourteen species of echinoderms and their relationships to the benthic structure of the coral reefs were assessed at 27 sites—with different levels of human disturbances—along the coast of the Mexican Central Pacific. Diadema mexicanum and Phataria unifascialis were the most abundant species. The spatial variation of the echinoderm assemblages showed that D. mexicanum, Eucidaris thouarsii, P. unifascialis, Centrostephanus coronatus, Toxopneustes roseus, Holothuria fuscocinerea, Cucumaria flamma, and Echinometra vanbrunti accounted for the dissimilarities among the sites. The spatial variation among the sites was mainly explained by the cover of the hard corals (Porites, Pocillopora, Pavona, Psammocora), different macroalgae species (turf, encrusting calcareous algae, articulated calcareous algae, fleshy macroalgae), sponges, bryozoans, rocky, coral rubble, sand, soft corals (hydrocorals and octocorals), Tubastrea coccinea coral, Balanus spp., and water depth. The coverage of Porites, Pavona, and Pocillopora corals, soft coral, rock, and Balanos shows a positive relationship with the sampling sites included within the natural protected area with low human disturbances. Contrary, fleshy macroalgae, sponges, and soft coral show a positive relationship with higher disturbance sites. The results presented here show the importance of protecting the structural heterogeneity of coral reef habitats because it is a significant factor for the distribution of echinoderm species and can contribute to the design of conservation programs for the coral reef ecosystem.     

Effect of habitat structure on reproduction and prey capture of a rare carnivorous plant, <Emphasis Type="Italic">Pinguicula lutea</Emphasis>

Habitat degradation is one of the greatest threats to biodiversity worldwide and the main contributor to the decline of many carnivorous plant species. For carnivorous plants in the southeastern United States, including many Pinguicula species (butterwort, Lentibulariaceae), degradation via altered fire regime has been implicated in their decline. Despite this decline, limited empirical research has been conducted examining the influence of habitat structural changes (through natural succession or human management) on reproduction and prey capture by carnivorous plants. The objectives of our study were to compare reproduction and prey capture for Pinguicula lutea (yellow butterwort) in habitats with different vegetation structures in the Florida Panhandle, where differences were largely due to management history. Pinguicula lutea is a self-compatible carnivorous plant that inhabits fire-dependent longleaf pine savannas of the southeastern United States and is threatened in the state of Florida. In 2014 and 2015, 13 sites were identified occupying three different habitat structures: maintained (intermittently mowed), grassy (dominated by Aristida stricta var. beyrichiana), and woody (encroachment by Hypericum and Ilex). Reproductive output was determined by assessing fruit set and ovule fertilization rate at each site. Additionally, prey availability and prey capture were assessed at each habitat site. In general, there were no differences in either measure of reproduction across habitat structure types. There were differences in prey abundance of Collembola, Diptera, and total arthropods both in terms of availability and capture. Total arthropod availability and prey capture were lowest in grassy sites compared to maintained habitat sites and woody habitat sites. Microclimatic conditions associated with each habitat structure and leaf morphology or physiology could explain the observed arthropod abundance and prey capture patterns. This study is the first ecological assessment of plant–insect interactions for Pinguicula species of the southeastern US and highlights the importance of habitat quality and management for this understudied group of carnivorous plants.     

Habitat preferences of the <Emphasis Type="Italic">Pteroclava krempfi</Emphasis>-alcyonaceans symbiosis: inner vs outer coral reefs

Herein, we provide observation on the ecological relationships between the hydrozoan species Pteroclava krempfi and three alcyonacean genera: Lobophytum, Sarcophyton and Sinularia from protected and exposed reef habitats in the Maldives. The associations were found to be widespread in the investigated area with both an overall and taxon-specific symbiosis prevalence higher in the exposed reef sites. Pteroclava krempfi most frequently occurred with Lobophytum, followed by Sinularia and Sarcophyton. The prevalence of P. krempfi with soft corals was also positively correlated to percent host cover, which was higher in the outer reef sites, suggesting a host-reliant relationship for the hydrozoan. However, the nature of these relationships, as as well as the factors that drive their establishment, requires further investigation. The widespread degradation of coral reef ecosystems endangers the existence of many poorly understood, but intimate relationships that often go unrecognized.     

Environmental and ecological factors influencing the spillover of the non-native kelp, <Emphasis Type="Italic">Undaria pinnatifida</Emphasis>, from marinas into natural rocky reef communities

The non-native kelp, Undaria pinnatifida, is considered one of the world’s worst invasive species. The northeast Atlantic is a hotspot of Undaria invasion, yet there is limited knowledge on its invasion dynamics. In the UK its distribution is strongly associated with artificial structures, primarily marina and harbour pontoons, with relatively few records of Undaria on natural substrates. Here, the southwest UK is used as a case region, to explicitly link Undaria distribution-abundance patterns in artificial marina habitats with those in natural rocky reef habitats. Using a mixture of in situ recording and video survey techniques, Undaria was found at all thirteen marina sites surveyed; but in only 17 of 35 rocky reef sites, all of which were in 2 of the 5 larger systems surveyed (Plymouth Sound and Torbay). The distribution-abundance patterns of Undaria at reef sites were analysed using zero-inflated models. The probability of finding Undaria on rocky reef increased with increasing proximity to marinas with high abundances of Undaria. Total propagule pressure from marinas also increased the probability of occurrence, and was positively related to Undaria abundance and cover at reef sites. Increases in the cover of native kelps, Laminaria spp., and wave exposure at reef sites were linked to a reduced probability of Undaria occurrence, and lower abundance and cover. Identifying high risk areas, natural boundaries and factors affecting the spread and abundance of non-native species in natural habitats is key to future management prioritisation. Where Undaria is confined to artificial substrates management may be deemed a low priority. However, the results of this study suggest that controlling the abundance and propagule pressure in artificial habitats may limit, to some extent, the spillover of Undaria into natural rocky reef habitats, where it has the potential to interact with and influence native communities.     

Long-term changes of small mammal communities in heterogenous landscapes of Central Europe

Long-term dynamics of small mammal communities are perennial themes in population ecology. However, comprehensive studies on the effect of environmental factors on population dynamics are still rare. Here, we aimed to analyze long-term data on Central European communities of small mammals occurring in two habitats that greatly differed in their structure, successional stages, and forest management. We found a richer community structure in young spruce plantations compared to mature European beech forests. In young spruce plantations, Myodes glareolus and Apodemus flavicollis abundances increased and Sorex araneus abundances decreased during the study period as a result of forest growth and management. Community structure in mature beech forests did not change significantly during the study period. Apodemus flavicollis and Myodes glareolus showed 3- and 5-year population cycles, respectively, and their abundances were simultaneously positively correlated with relative abundance of masts. Weather also played a role, while the effect of snow cover was pronounced only in mountain areas where it negatively affected Microtus agrestis and Sorex araneus abundances, temperature positively and rainfall negatively influenced Myodes glareolus and Apodemus flavicollis abundances across both studied habitats. Our findings document that a complex of environmental factors significantly affects the structure and dynamics of small mammal communities in Central Europe, and both local biotic and abiotic factors should be considered in future studies.     

Roadside verges can support spontaneous establishment of steppe-like habitats hosting diverse assemblages of bees and wasps (Hymenoptera: Aculeata) in an intensively cultivated central European landscape

Anthropogenic habitats, which are frequently occupied by otherwise endangered species of the open landscape, suffer from a lack of sustainability. Here, we analyzed one of the few sustainable anthropogenic habitats, roadside verges. We hypothesized that steppe-like habitats at upper parts of south-exposed slopes of roadside verges may serve as the only strongholds of threatened species ousted from the surrounding intensively cultivated landscape, with direct consequences for plant pollination and other ecosystem services. We examined bees and wasps alongside Highway 7 constructed 14–28 years ago in the northwestern Czech Republic. The sampling sites were located 4–17 m from paved road with traffic intensity of 9523 to 38,688 vehicles × 24 h^?1, and they consisted of steppe-like habitats with patches of bare soil (sand, loess and claystone) that formed and were maintained spontaneously. The sites were not connected to any permanent grasslands or forests, and they were surrounded mostly by arable fields. We found 139 species of herbs (nine threatened) in vegetation surveys along transects. We identified 164 species of bees and wasps, with a dominance of 0.052 and a Fisher’s alpha of 45.0; 32 species were threatened, including a second Czech record of Chrysis gribodoi spilota and four critically endangered species (Andrena florivaga, Halictus scabiosae, Sphecodes spinulosus and Nanoclavelia leucoptera). The captured specimens consisted of a higher number of loess specialists and other steppe species compared to specimens associated with other anthropogenic habitats that provide bare ground (sand pits and ash deposits). In conclusion, the formation of spontaneously maintained steppe-like habitats at roadside verges should be considered to be an appropriate tool supporting the biodiversity in the highly cultivated landscape of central Europe.     

Genetic variation and phylogeography of the bank vole (<Emphasis Type="Italic">Clethrionomys glareolus</Emphasis>, Arvicolinae,Rodentia) in Russia with special reference to the introgression of the mtDNA of a closely related species,red-backed vole (<Emphasis Type="Italic">Cl. rutilus</Emphasis>)

Totally, 294 bank voles (Clethrionomys glareolus) and 18 red-backed voles (Cl. rutilus) from 62 sites of European Russia were studied. Incomplete sequences (967 bp) of the mitochondrial cytochrome b gene were determined for 93 Cl. glareolus individuals from 56 sites and 18 Cl. rutilus individuals from the same habitats. Analysis of the cytochrome b gene variation has demonstrated that practically the entire European part of Russia, Ural, and a considerable part of Western Europe are inhabited by bank voles of the same phylogroup, displaying an extremely low genetic differentiation. Our data suggest that Cl. glareolus very rapidly colonized over the presently occupied territory in the post-Pleistocene period from no more than two (central European and western European) refugia from ancestral populations with a small effective size. PCR typing of the mitochondrial cytochrome b gene allowed us to assess the scale of mtDNA introgression from a closely related species, Cl. rutilus, and to outline the geographical zone of this introgression. Comparison with the red-backed vole haplotypes in the habitats shared by both species favors the hypothesis of an ancient hybridization event (mid-Holocene) and a subsequent introgression. These results suggest that the hybridization took place in the southern and middle Pre-Ural region.     

Clonal growth architecture and spatial dynamics of 10 species of the genus <Emphasis Type="Italic">Potamogeton</Emphasis> across different habitats in Kashmir Valley,India

The plasticity in clonal architecture may enable plants to effectively respond to environmental constraints and to enhance species ecological niche breadth but its role in plant tolerance to water flow is poorly documented. The present study was carried out to determine whether the clonal architecture varies with respect to water flow in 10 species of the genus Potamogeton colonizing habitats differing by flow conditions. For these 10 species, the traits describing clonal architecture were measured on individuals sampled in natural sites and plasticity in clonal architecture was examined in a common garden growth experiment. The clonal growth architecture did not vary significantly in the species which inhabit either standing (P. lucens, P. natans, and P. pusillus) or running water (P. amblyphyllus and P. berchtoldii). However, the species inhabiting both standing as well as running waters (P. crispus, P. nodosus, P. pectinatus, P. perfoliatus, and P. wrightii) showed considerable and significant variation in clonal growth architecture across these habitats. Transplantation experiment revealed that clonal architecture observed between the plants under different conditions is plastic and not due to genetic differentiation. The present study demonstrated that plasticity in the clonal architecture may enable these species to inhabit stressful conditions of flowing water.     

The role of protected area zoning in invasive plant management

As anthropogenic pressure on the landscape increases, invasive alien species (IAS) pose a growing threat to areas designed to protect high biodiversity habitats. In order to assess the present danger of IAS spread, we examined 23 Czech sites of community importance (SCI) within Natura 2000 protected areas (PA) over 2015 and mapped the occurrence of four IAS: Solidago spp. (goldenrod), Impatiens glandulifera (Himalayan balsam), Heracleum mantegazzianum (giant hogweed) and Fallopia spp. (Japanese knotweed). The model areas were divided into five monitoring zones, graded by conservation importance and habitat disturbance level (core area [A], broader core area [B], semi-natural habitat [C], anthropogenically affected habitat [D], anthropogenically degraded habitat [E]). Despite a high number of IAS occurrences (3222 localities), habitats of European importance (zone A) showed a relatively low level of invasion (< 0.3% total area). Highest IAS occurrence number was in SCI border areas and disturbed habitats (zones C and E). There was a significant positive correlation between level of invasion inside and outside SCIs, related to human activities such as logging and urbanisation. A strong effect for watercourse vicinity was noted for the occurrence of I. glandulifera and Fallopia spp.; but not for H. mantegazzianum and Solidago spp. A stratified management approach, employing zones delimitation to assess what threat pose IAS to the PA objects of conservation, can be useful to prioritize control measures in IAS local action plans.     

Microsatellite DNA analysis of spatial and temporal population structuring of <Emphasis Type="Italic">Phragmites australis</Emphasis> along the Hudson River Estuary

Phragmites australis is a perennial grass that has invaded wetlands of the northeastern United States over the past century. The Hudson River Estuary and surrounding watersheds are no exception in that populations of P. australis have spread dramatically along its shores and tributaries in the past 40 years. Recent studies have shown that genetically variable populations of P. australis can spread by seed dispersal in addition to clonal mechanisms. It is important to characterize the genetic variation of Hudson River populations as part of a management strategy for this species to determine the mechanisms by which its spreads and colonizes new habitats, particularly those with frequent anthropogenic disturbances. The goals of this study were to quantify levels of genetic variation and structuring in Hudson River populations of P. australis using microsatellite DNA analysis. A total of 354 culms of P. australis were collected from nine locations ranging from Albany, New York to Staten Island, New York in the summers of 2004 (N = 174) and 2011 (N = 180). Microsatellite data from eight loci indicated that the Hudson River Estuary has some of the highest levels of genetic variation of all U. S. Atlantic Coast regions containing P. australis. Gene diversity (Hs) across all loci in the 2004 collection was 0.45 (±0.02) and that of the 2011 collection was 0.47 (±0.07). Patches within sample sites were rarely monoclonal and had multiple genetic phenotypes. Moran’s Identity tests indicated that individuals within a patch were closely related, whereas little genetic relatedness was evident among individuals from sample sites >1 km apart. Spatial structuring was also not evident in autospatial correlation and principle coordinate analyses. These findings suggest that genetic diversity is maintained within stands by sexual reproduction and that seeds are important in dispersal of P. australis across the Hudson River Estuary. Ample habitats are available for establishment of new Phragmites stands due to high levels of anthropogenic disturbance from populations living along the Estuary. Wildlife managers should focus on monitoring habitats that provide seedbed for Phragmites and promote land use practices that prevent soil disturbance and establishment of new stands.     

The Prevalence of <Emphasis Type="Italic">Trypanosoma cruzi</Emphasis>, the Causal Agent of Chagas Disease,in Texas Rodent Populations

Rodent species were assessed as potential hosts of Trypanosoma cruzi, the etiologic agent of Chagas disease, from five sites throughout Texas in sylvan and disturbed habitats. A total of 592 rodents were captured, resulting in a wide taxonomic representation of 11 genera and 15 species. Heart samples of 543 individuals were successfully analyzed by SybrGreen-based quantitative PCR (qPCR) targeting a 166 bp fragment of satellite DNA of T. cruzi. Eight rodents representing six species from six genera and two families were infected with T. cruzi. This is the first report of T. cruzi in the pygmy mouse (Baiomys taylori) and the white-footed mouse (Peromyscus leucopus) for the USA. All infected rodents were from the southernmost site (Las Palomas Wildlife Management Area). No differences in pathogen prevalence existed between disturbed habitats (5 of 131 tested; 3.8%) and sylvan habitats (3 of 40 tested; 7.5%). Most positives (n = 6, 16% prevalence) were detected in late winter with single positives in both spring (3% prevalence) and fall (1% prevalence). Additionally, 30 Triatoma insects were collected opportunistically from sites in central Texas. Fifty percent of these insects, i.e., 13 T. gerstaeckeri (68%), and two T. lecticularia (100%) were positive for T. cruzi. Comparative sequence analyses of 18S rRNA of samples provided identical results with respect to detection of the presence or absence of T. cruzi and assigned T. cruzi from rodents collected in late winter to lineage TcI. T. cruzi from Triatoma sp. and rodents from subsequent collections in spring and fall were different, however, and could not be assigned to other lineages with certainty.     

All natural habitat edges matter equally for endangered <Emphasis Type="Italic">Maculinea</Emphasis> butterflies

An obvious consequence of habitat fragmentation is an increasing role of habitat edges for species survival. Recently it has been suggested that the endangered butterfly Maculinea nausithous prefers forested edges of its meadow habitats. However, the prevalence of forests in the study area used for this analysis makes it impossible to distinguish whether the effect detected is a genuine preference for forest edges or a preference for any natural patch edges as opposed to patch interiors. We investigated habitat selection by Maculinea nausithous and Maculinea teleius occurring sympatrically at five habitat patches surrounded by mosaic landscape. Butterfly capture positions were marked with GPS and subsequently analysed with GIS software. Both species avoided the interiors of their patches and concentrated in the edge zone, but these preferences were visible only at three larger patches exceeding 1 ha in area. Among different types of edges those bordering densely built-up areas were avoided, whereas all natural edges (adjacent to forests, reeds or grasslands) were similarly used. We hypothesise that preferences towards natural patch edges, regardless of their type, can be explained by the spatial interactions between Maculinea butterflies and Myrmica ants they parasitise. Patch surroundings constitute refuge space for the ants, and hence their densities may be expected to be higher near patch edges. Our findings indicate the importance of patch surroundings for the persistence of Maculinea populations. Regretfully, current legal framework makes it difficult to protect patch surroundings, where neither priority species nor their habitats occur.     

Steeplebushes conquer the countryside: influence of invasive plant species on spider communities (Araneae) in former wet meadows

Central European wet meadows are diminished by abandonment of cultivation measures, drainage, pollution, intensive agriculture and climate change during the last decades. In addition, original wet meadow communities can be threatened by immigrating neophytes. Typical invasive species in wet meadows are the steeplebushes Spiraea tomentosa and Spiraea douglasii, but their impact on the indigenous arthropod fauna is unknown. The present study therefore investigates Spiraea-induced changes in ground- and herb dwelling spiders in Spiraea sites, uncultivated meadows with interspersed Spiraea sp. and mowed meadows without Spiraea sp. using pitfall traps and sweep netting. Light intensity, vegetation height and coverage differed significantly between the Spiraea sites and the mowed meadows. In consequence, the activity density of ground-dwelling spiders was much lower in the Spiraea sites and their habitat preferences differed significantly from the two meadow types. Species preferring forests and forest edges were more abundant in invaded sites whereas specimens preferring open habitats decreased. Although the vegetation height and coverage of mowed meadows and cultivated meadows did not differ remarkably, uncultivated meadows contained less spiders of open dry habitats whereas forest species increased. In contrast, differences between herb dwelling spider assemblages of the three habitat types were not significant. Based on the results of the project, the risk of steeple bush invasion and management methods of wet meadows are discussed.     

High phenolic content fails to deter mesograzer consumption of <Emphasis Type="Italic">Myriophyllum spicatum</Emphasis> (Eurasian watermilfoil) in New England

Eurasian watermilfoil (Myriophyllum spicatum) is often considered one of the most aggressive macrophyte invaders in freshwater habitats throughout the USA. However, conditions leading to successful milfoil invasions are not well understood. This study sought to illuminate the role of herbivores in determining milfoil invasion success via the potential mechanisms of enemy release and biotic resistance. We determined feeding preferences of three herbivores native to the northeastern United States and measured macrophyte phenolic content, which may act as an herbivore feeding deterrent. We found that phenolic content in milfoil was more than two times higher than in the most abundant native macrophytes at our study sites, consistent with enemy release. However, laboratory feeding experiments demonstrated that milfoil phenolics did not deter amphipod (Hyalella azteca), snail (Physella sp.), or weevil (Euhrychiopsis lecontei) herbivory. Furthermore, amphipod consumption rates in our study were an order of magnitude higher than amphipod consumption rates reported in milfoil’s native range, contrary to the predictions of enemy release. Amphipods and snails from habitats invaded by milfoil consumed similar quantities of both milfoil and the low-phenolic native plant Elodea canadensis. In contrast, weevils consumed milfoil but not E. canadensis in choice experiments. Amphipods collected from milfoil-free habitats also readily consumed milfoil, and they consumed 2.5 times more milfoil than E. canadensis in a choice feeding trial. These results suggest that high phenolic levels do not prevent native herbivores from consuming invasive milfoil. Instead, native generalist grazers like amphipods and snails may limit milfoil proliferation and provide a measure of biotic resistance.     

Genetic diversity of free-living <Emphasis Type="Italic">Symbiodinium</Emphasis> in the Caribbean: the importance of habitats and seasons

Although reef corals are dependent of the dinoflagellate Symbiodinium, the large majority of corals spawn gametes that do not contain their vital symbiont. This suggests the existence of a pool of Symbiodinium in the environment, of which surprisingly little is known. Reefs around Curaçao (Caribbean) were sampled for free-living Symbiodinium at three time periods (summer 2009, summer 2010, and winter 2010) to characterize different habitats (water column, coral rubble, sediment, the macroalgae Halimeda spp., Dictyota spp., and Lobophora variegata, and the seagrass Thalassia testudinum) that could serve as environmental sources of symbionts for corals. We detected the common clades of Symbiodinium that engage in symbiosis with Caribbean coral hosts A, B, and C using Symbiodinium-specific primers of the hypervariable region of the chloroplast 23S ribosomal DNA gene. We also discovered clade G and, for the first time in the Caribbean, the presence of free-living Symbiodinium clades F and H. Additionally, this study expands the habitat range of free-living Symbiodinium as environmental Symbiodinium was detected in T. testudinum seagrass beds. The patterns of association between free-living Symbiodinium types and habitats were shown to be complex. An interesting, strong association was seen between some clade A sequence types and sediment, suggesting that sediment could be a niche where clade A radiated from a free-living ancestor. Other interesting relationships were seen between sequence types of Symbiodinium clade C with Halimeda spp. and clades B and F with T. testudinium. These relationships highlight the importance of some macroalgae and seagrasses in hosting free-living Symbiodinium. Finally, studies spanning beyond a 1-yr cycle are needed to further expand on our results in order to better understand the variation of Symbiodinium in the environment through time. All together, results presented here showed that the great diversity of free-living Symbiodinium has a dynamic distribution across habitats and time.     

Historical land use and present-day canopy thinning differentially affect the distribution and abundance of invasive and native ant species

Disturbance may play a key role in affecting animal invasions; less appreciated is that past and present disturbances might interact to affect invasion. For example, although large portions of forest ecosystems worldwide are jointly affected by a history of past agricultural land use as well as contemporary timber harvest, it is unclear whether these disturbances facilitate biological invasions. We conducted a large-scale experiment that coupled adjacent non-agricultural and post-agricultural sites and a factorial canopy-thinning manipulation to understand how past agricultural land use might interact with contemporary canopy thinning to affect the distribution (i.e., presence/absence of mounds) and abundance of a highly invasive ant species, Solenopsis invicta, and common native ant species, Dorymyrmex bureni. Mounds of S. invicta were more likely to be present in unthinned post-agricultural habitats than unthinned non-agricultural habitats, but this legacy effect disappeared with canopy thinning. In unthinned habitats, the presence of D. bureni mounds did not differ based on past land use. However, presence of D. bureni mounds was greater in thinned non-agricultural habitats than thinned post-agricultural habitats. Once present in an area, mound abundance was largely related to temperature near the ground for both species, and negatively related to soil compaction for D. bureni. Our results provide large-scale evidence that an understanding of anthropogenic events that occur decades before present may be essential for interpreting contemporary invasion dynamics and the distribution of some species, and that local contemporary habitat characteristics play a key role in determining ant abundance once an area is colonized.     

South African mouse shrews (<Emphasis Type="Italic">Myosorex</Emphasis>) feel the heat: using species distribution models (SDMs) and IUCN Red List criteria to flag extinction risks due to climate change

Five species of mouse or forest shrews (Myosorex) are endemic to South Africa, Lesotho and Swaziland, four of which (Myosorex varius, Myosorex cafer, Myosorex longicaudatus and Myosorex cf. tenuis) are associated with montane or temperate grassland, fynbos and/or forest habitats while a fifth (Myosorex sclateri) is associated with lowland subtropical forests. Due to their small size, specialised habitat, low dispersal capacity, high metabolism and sensitivity to temperature extremes, we predicted that, particularly for montane species, future climate change should have a negative impact on area of occupancy (AOO) and ultimately extinction risks. Species distribution models (SDMs) indicated general declines in AOO of three species by 2050 under the A1b and A2 climate change scenarios (M. cafer, M. varius, M. longicaudatus) while two species (M. sclateri and M. cf. tenuis) remained unchanged (assuming no dispersal) or increased their AOO (assuming dispersal). While temperate species such as M. varius appear to be limited by temperature maxima (preferring cooler temperatures), the subtropical species M. sclateri appears to be limited by temperature minima (preferring warmer temperatures). Evidence for declines in AOO informed the uplisting (to a higher category of threat) of the Red List status of four Myosorex species to either vulnerable or endangered as part of a separate regional International Union for Conservation of Nature (IUCN) Red List assessment.     

Occurrence and Genetic Structure of the Systemic Grass Endophyte <Emphasis Type="Italic">Epichloë festucae</Emphasis> in Fine Fescue Populations

Epichloë species are systemic fungal endophytes that usually specialize in a certain group of related grass species. We examined the infection frequency of Epichloë festucae in populations of two fine fescue species (Festuca rubra and F. ovina) in natural and seminatural habitats at 86 study sites (total = 2514 plants) across Finland and northern Norway. Infection incidence varied significantly among grass species and populations. A substantial number of the F. rubra and F. ovina populations (53 out of 77 and 25 out of 30, respectively) were either endophyte-free or had very low (<20%) infection frequencies. The highest infection frequencies were found in subarctic areas. Moreover, infection incidence differed between habitats. In the area with the highest infection frequencies, we used microsatellite markers to study genetic diversity and the rates of gene flow of E. festucae among 12 F. rubra populations. Twenty out of the 25 fungal genotypes detected with four microsatellite markers were carrying multiple alleles in at least one locus, indicating multiple infections or vegetative hybridization of the fungus. One dominant genotype occurred in all 12 populations, representing 63.5% of all isolates. We found a moderate level of average genotypic variation and a low level of genetic differentiation (F _st = 0.0814). There was no correlation between infection frequency and genotypic diversity. Although the existence of a dominant genotype and the detected linkage disequilibrium suggest that the fungus is mainly asexual and vertically transmitted, the multiallelic loci and variation of genetic diversity among populations indicate occasional contagious spread and sexual or parasexual recombination of the fungus in some populations. Furthermore, the genotypes carrying multiallelic loci suggest the possibility of multiple infections or hybridization of the endophyte.