蓝藻Hox氢酶催化产氢的调控

蓝藻是唯一能通过光合作用产生清洁可再生燃料氢气的原核微生物。一些蓝藻具有催化产氢活性的镍-铁Hox氢酶(双向氢酶), 由于其巨大的应用潜力受到广泛的关注。但Hox氢酶在蓝藻产氢过程中调控途径尚不清楚。本文对蓝藻Hox氢酶的结构、生态分布和表达调控的研究进展进行了总结。简单介绍了作者近来对模式蓝藻Synechocystis sp. PCC 6803 hox操纵子中两个未知功能基因ssl2420和sll1225的研究结果。     

Duplication of hyp genes involved in maturation of [NiFe] hydrogenases in Alcaligenes eutrophus H16

  Alcaligenes eutrophus H16 harbors seven hyp genes (hypA, B, F, C, D, E, and X) as part of the hydrogenase gene cluster on megaplasmid pHG1. Here we demonstrate that three of the hyp genes (hypA, B, and F) are duplicated in A. eutrophus, which explains the lack of a phenotypic change in single-site mutants impaired in one of the two copies. Mutants with lesions in both copies showed clear alterations in hydrogenase activities. Deletions in hypF1 and hypF2 completely abolished activities of the soluble hydrogenase and of the membrane-bound hydrogenase, mutations in hypA1 and hypA2 totally blocked the membrane-bound hydrogenase activity, while residual soluble hydrogenase activity accounted for the extremely slow growth of the strain on H₂. Both hydrogenase activities of mutants defective in hypB1 and hypB2 were partially restored by elevating the concentration of nickel chloride in the medium. Reduction of hydrogenase activities in the double mutants correlated with varying degrees of maturation deficiency based upon the amount of unprocessed nickel-free hydrogenase precursor. Despite a high identity between the two copies of hyp gene products, substantial structural differences were identified between the two copies of hypF genes. HypF1, although functionally active, is a truncated version of HypF2, whose structure resembles HypF proteins of other organisms. Interestingly, the N-terminus of HypF2, which is missing in the HypF1 counterpart, contains a putative acylphosphatase domain in addition to a potential metal binding site. Received: 15 June 1998 / Accepted: 5 August 1998     

Toxins-antitoxins: diversity,evolution and function

Genes for toxin-antitoxin (TA) complexes are widespread in prokaryote genomes, and species frequently possess tens of plasmid and chromosomal TA loci. The complexes are categorized into three types based on genetic organization and mode of action. The toxins universally are proteins directed against specific intracellular targets, whereas the antitoxins are either proteins or small RNAs that neutralize the toxin or inhibit toxin synthesis. Within the three types of complex, there has been extensive evolutionary shuffling of toxin and antitoxin genes leading to considerable diversity in TA combinations. The intracellular targets of the protein toxins similarly are varied. Numerous toxins, many of which are sequence-specific endoribonucleases, dampen protein synthesis levels in response to a range of stress and nutritional stimuli. Key resources are conserved as a result ensuring the survival of individual cells and therefore the bacterial population. The toxin effects generally are transient and reversible permitting a set of dynamic, tunable responses that reflect environmental conditions. Moreover, by harboring multiple toxins that intercede in protein synthesis in response to different physiological cues, bacteria potentially sense an assortment of metabolic perturbations that are channeled through different TA complexes. Other toxins interfere with the action of topoisomersases, cell wall assembly, or cytoskeletal structures. TAs also play important roles in bacterial persistence, biofilm formation and multidrug tolerance, and have considerable potential both as new components of the genetic toolbox and as targets for novel antibacterial drugs.     

Heterotrophic metabolism and regulation of uptake hydrogenase activity in symbiotic cyanobacteria

The H₂ uptake activity of three cyanobionts isolated fromCycas revoluta, C. circinalis andazolla filiculoides was shown to be related primarily to the growth rate and independent of the main mode of carbon nutrition. Significant H₂ uptake was found in the coralloid roots ofCycas revoluta andZamia furfuracea (3 and 22 times higher than the respective C₂H₂ reduction activities). The results attained allow us to conclude that in cyanobacteria, in contrast to most nitrogen-fixing heterotrophs, uptake hydrogenase activity is not repressed by carbon substrates and that cyanobacteria in association seem to be endowed with sufficient H₂ uptake capacity to recover all of the H₂ released during the process of N₂-fixation.     

CRISPR-Cas系统转录调控机制的研究进展

原核生物可利用由CRISPR-Cas系统(clustered regularly interspaced short palindromic repeats-CRISPR associated)介导的适应性免疫机制防御外源核酸入侵.在适应性免疫过程中,原核生物将外源核酸部分片段整合至自身CRISPR阵列中,表达并加工的...     

Useful Carriers for Cyanobacteria: Their Response to Cyanobacterial Growth, Acetylene-Reductase Activity, Cyanobacterial Grazers and Paddy Yield in Calcareous Soil

Summary Snails and nematodes, the potential cyanobacterial grazers, differ in their choice for cyanobacterial diet. Snails prefer non-mucilaginous forms while nematodes prefer mucilaginous forms. Such differences in feeding choice between the cyanobacteria suggests that it may not be possible to select strains of diazotrophic cyanobacteria that are resistant to all grazers. The potential consumption of cyanobacteria at an average field density of 20,000 snails ha⁻¹ was estimated to be about 50 kg (fresh weight) ha⁻¹ day⁻¹. Dorylamus sp. was most dominant nematode associated with cyanobacterial consumption. Phytoextracts of neem (Azadirachta indica), bel (Aegle marmelos) and tobacco (Nicotiana tabacum) were effective in controlling these cyanobacterial grazers. The minimum concentration of neem, bel and tobacco phytoextract in water for 100 % mortality of snails were 0.1, 2.0 and 0.05%, respectively. However, trepellent level was only 0.01% for neem and tobacco phytoextract. Complete mortality of nematode (Dorylamus spp.) required a higher concentration level (2%) even in the most effective tobacco phytoextract. Lower levels of phytoextract (0.1%) were found to stimulate growth and nitrogen fixation of cyanobacteria. Application of these plant biomasses resulted in significant increase in cyanobacterial acetylene-reducing activity (ARA) and rice yield and a significant decrease in snail and nematode population. Augmentation of cyanobacterial acetylene-reducing activity was two to three times higher in comparison to the control in both the years of experimentation. Rice yield also increased between 3.8 and 58.5% over the control, depending on the quantity and nature of plant biomass. Tobacco waste was significantly superior in comparison to neem and bel biomass as carrier of cyanobacterial culture.     

Location, catalytic activity, and subunit composition of NAD-reducing hydrogenases of some Alcaligenes strains and Rhodococcus opacus MR22

Six new strains of Alcaligenes enriched for and isolated as nickel-resistant bacteria resemble Alcaligenes eutrophus H16 and contain both an NAD-reducing, tetrameric soluble hydrogenase and a membrane-bound hydrogenase. None of the soluble hydrogenases share with the Rhodococcus opacus MR11 enzyme tetramer the property of being cleaved easily into two dimeric moieties [a hydrogenase (βδ) and an NADH:acceptor oxidoreductase (αγ)], in the absence of nickel or at low ionic strength. The soluble hydrogenase of the newly isolated strain MR22 of R. opacus equalled that of strain MR11. The absence of a membrane-bound hydrogenase in Alcaligenes denitrificans strain 4a-2 and in Alcaligenes ruhlandii was confirmed. Received: 14 May 1996 / Accepted: 7 November 1996     

浑球红细菌（Rhodobacter sphaeroides）中氢化酶正调节基因hupR的克隆及功能分析

从光合细菌Rhodobacter sphaeroides基因文库中分离出含有氢化酶基因簇（hup）的粘粒cosmid 1后,亚克隆了R.sphaeroides的氢化酶调节基因hupR,测定了hupR的核苷酸序列,并完成了氢化酶基因簇的部分物理图谱。实验结果表明,hupR基因全长1476bp,编码的HupR基因分子量约为54.031kD(EMBL接受号：A243734)。与R.capsulatus中HupR相比,同源性高达73％。同源性比较结果表明,它属于双组分调节系统中受体蛋白。hupR基因在E.coli中进行了体外表达,纯化后测定得到的HupR蛋白 分子量大小与hupR基因推测的分子量大小一致。通过双交换,将卡那霉素抗性基因插入hupR基因,获得丧失氢化酶活性的hupR^-的突变株,KR5和KR7。hupS∷lacZ融合基因在野生型中的转录表达量是在该突变株中的7－9倍。将hupR基因置于弱启动子pfru下游,构建了质粒pNRC3,并将其导入hupR^-的突变株,可使突变株重新获得氢化酶活性。以上结果说明,HupR蛋白对氢化酶的转录表达起着正调节作用。在HupR蛋白的磷酸化区域进行定点和缺失突变。不影响HupR激活氢化酶基因的表达,推测HupR蛋白是在非磷酸化的状态下起调节作用的。     

A new cumulene diiron complex related to the active site of Fe-only hydrogenases and its phosphine substituted derivatives: synthesis, electrochemistry and structural characterization

A new cumulene diiron complex related to the Fe-only hydrogenase active site [(μ-SCH₂C(S)CCH₂)Fe₂(CO)₆] (1) was obtained by treatment of (μ-LiS)₂Fe₂(CO)₆ with excess 1,4-dichloro-2-butyne. By controllable CO displacement of 1 with PPh₃ and bis(diphenylphosphino)methane (dppm), mono- and di-substituted complexes, namely [(μ-SCH₂C(S)CCH₂)Fe₂(CO)₅L] (2: L = PPh₃; 3: L = dppm) and [(μ-SCH₂C(S)CCH₂)Fe₂(CO)₄L₂] (4: L = PPh₃; 5: L = dppm) could be prepared in moderate yields. Treatment of 1 with bis(diphenylphosphino)ethane (dppe) afforded a double butterfly complex [(μ-SCH₂C(S)CCH₂)Fe₂(CO)₅]₂(μ-dppe) (7). With dppm in refluxing toluene, a dppm-bridged complex [(μ-SCH₂C(S)CCH₂)Fe₂(CO)₄(μ-dppm)] (6) was obtained. These model complexes were characterized by IR, ¹H, ³¹P NMR spectra and the molecular structures of 1, 2 and 5-7 were determined by single crystal X-ray analyses. The electrochemistry of 1-3 was studied and the electrocatalytic property of 1 was investigated for proton reduction in the presence of HOAc.     

Cyanobacteria and Cyanobacterial Lichens from Inselbergs of the Ivory Coast,Africa

This study focuses on the saxicolous lichens and cyanobacteria of the open, exposed rock surface of inselbergs. Twenty-three species of cyanobacteria and 17 cyanobacterial lichen species (“cyanolichens”) from several inselbergs and other rocky outcrops of three major climatic regions, savanna, transition zone and rain forest, are reported from the Ivory Coast. Inselbergs are isolated and frequently mountains consisting of Precambrian granites or gneisses that abruptly rise from the surrounding plains. Cyanobacteria were found to be the dominating organisms on all rock surfaces. The lichens found mainly belong to the family Peltulaceae and a few were present from the family Lichinaceae. Nine species of the cyanolichens and most of the cyanobacteria are new for the Ivory Coast. A gradient in total species number (cyanolichens and cyanobacteria) occurs from the savanna to the rain forest, with a decrease in species number towards the rain forest. Saxicolous cyanobacterial lichens reached a higher species number in the savanna type ecosystem (11) than on inselbergs in the rain forest (7). The cyanolichens and cyanobacteria found are characteristic for larger, light-exposed rock surfaces and species like P. congregate, P. lingulata, P. tortuosa and P. umbilicata preferentially occur on the granite or sandstone of inselbergs.     

Cyanobacterial two-component proteins: structure, diversity, distribution, and evolution.

A survey of the already characterized and potential two-component protein sequences that exist in the nine complete and seven partially annotated cyanobacterial genome sequences available (as of May 2005) showed that the cyanobacteria possess a much larger repertoire of such proteins than most other bacteria. By analysis of the domain structure of the 1,171 potential histidine kinases, response regulators, and hybrid kinases, many various arrangements of about thirty different modules could be distinguished. The number of two-component proteins is related in part to genome size but also to the variety of physiological properties and ecophysiologies of the different strains. Groups of orthologues were defined, only a few of which have representatives with known physiological functions. Based on comparisons with the proposed phylogenetic relationships between the strains, the orthology groups show that (i) a few genes, some of them clustered on the genome, have been conserved by all species, suggesting their very ancient origin and an essential role for the corresponding proteins, and (ii) duplications, fusions, gene losses, insertions, and deletions, as well as domain shuffling, occurred during evolution, leading to the extant repertoire. These mechanisms are put in perspective with the different genetic properties that cyanobacteria have to achieve genome plasticity. This review is designed to serve as a basis for orienting further research aimed at defining the most ancient regulatory mechanisms and understanding how evolution worked to select and keep the most appropriate systems for cyanobacteria to develop in the quite different environments that they have successfully colonized.     

Cyanobacterial chemotaxis to extracts of host and nonhost plants

Chemotaxis may be important when forming cyanobacterial symbioses. However, knowledge of cyanobacterial attraction towards plants and factors affecting chemotaxis is limited. Chemo-attraction was observed in Nostoc strains 8964:3 and PCC 73102 towards exudate or crushed extract of the natural hosts Gunnera manicata, Cycas revoluta and Blasia pusilla, and the nonhost plants Trifolium repens, Arabidopsis thaliana and Oryza sativa. As all tested plant extracts generated chemotaxis, the possibility to attract cyanobacteria may be widespread in plants. Chemotaxis was reduced by increased temperature and darkness and was stimulated by phosphorous and iron starvation and elevated salt concentration. Sugars (arabinose, galactose, and glucose) had a positive effect on chemotaxis, whereas flavonoids (chrysin and naringenin) and amino acids (methionine, glycine, serine, phenylalanine, glutamine, and lysine) had no effect.     

Structural differences between the ready and unready oxidized states of [NiFe] hydrogenases

[NiFe] hydrogenases catalyze the reversible heterolytic cleavage of molecular hydrogen. Several oxidized, inactive states of these enzymes are known that are distinguishable by their very different activation properties. So far, the structural basis for this difference has not been understood because of lack of relevant crystallographic data. Here, we present the crystal structure of the ready Ni-B state of Desulfovibrio fructosovorans [NiFe] hydrogenase and show it to have a putative -hydroxo Ni–Fe bridging ligand at the active site. On the other hand, a new, improved refinement procedure of the X-ray diffraction data obtained for putative unready Ni-A/Ni-SU states resulted in a more elongated electron density for the bridging ligand, suggesting that it is a diatomic species. The slow activation of the Ni-A state, compared with the rapid activation of the Ni-B state, is therefore proposed to result from the different chemical nature of the ligands in the two oxidized species. Our results along with very recent electrochemical studies suggest that the diatomic ligand could be hydro–peroxide.An erratum to this article can be found at     

含hup基因的质粒在催娩克氏杆菌中的稳定性及吸氢酶的表达

以质粒pKT230为栽体,亚克隆大豆根瘤菌吸氢酶结构基因(hupSL)片段,构建成嵌合质粒pKH1。将质粒分配系统基因(parDE)片段和吸氢酶结构基因(hup)片段插入载体质粒pRK415,构建成质粒pRKBH。质粒pKH1、pRKBH和载体pRK415经转化和三亲本杂交,得到DH5α/pHR11、DH5α/pRKBH、E1201/pKH1、NG13/pKH1(NGH999)、NG1390/pRK415、NG1390/pHR11、NG1390/pRKBH和NG1390/pKH1(NGH982)等接合子。稳定性分析发现,质粒pKH1在催娩克氏杆茵中传80代后仍有92％以上的菌株含此质粒,说明质粒pKH1有较高的稳定性。吸氢酶活性分析表明,H     

Preparation, structures and electrochemical property of phosphine substituted diiron azadithiolates relevant to the active site of Fe-only hydrogenases

Mono- and di-phosphine diiron azadithiolate complexes [{(mu-SCH(2))(2)N(4-NO(2)C(6)H(4))}Fe(2)(CO)(5)(PMe(3))] (2), [{(mu-SCH(2))(2)N(4-NO(2)C(6)H(4))}{Fe(CO)(2)L}(2)] (3, L=PMe(3); 4, PMe(2)Ph) and the mu-hydride diiron complex [3(FeHFe)](+)[PF(6)](-) were prepared as biomimetic models of the active site of Fe-only hydrogenases. The complexes 2-4 and [3(FeHFe)](+)[PF(6)](-) were characterized by IR, (31)P, (1)H and (13)C NMR spectra and their molecular structures were determined by single crystal X-ray analyses. The PMe(3) ligand in complex 2 lies on the basal position. The PMe(3)-disubstituted complex 3 exists as two configuration isomers, transoid basal/basal and apical/basal, in the crystalline state, while two PMe(2)Ph ligands of 4 are in an apical/basal orientation. The variable temperature (31)P NMR spectra of 2 and 3 were made to have an insight into the existence of the possible conformation isomers of 2 and 3 in solution. The [3(FeHFe)](+) cation possesses the sole transoid ba/ba geometry as other reported mu-hydride diiron analogues. The electrocatalytic property of {(mu-SCH(2))(2)NC(6)H(5)}[Fe(CO)(2)PMe(3)](2) (5) was studied for proton reduction in the presence of HOAc.