Wild chinook salmon survive better than hatchery salmon in a period of poor production

The population dynamics of chinook salmon (Oncorhynchus tshawytscha) from the Cowichan River on Vancouver Island, British Columbia, Canada are used by the Pacific Salmon Commission as an index of the general state of chinook salmon coast wide. In recent years the production declined to very low levels despite the use of a hatchery that was intended to increase production by improving the number of smolts entering the ocean. In 2008, we carried out an extensive study of the early marine survival of the hatchery and wild juvenile chinook salmon. We found that both rearing types mostly remained within the Gulf Islands study area during the period when most of the marine mortality occurred for the hatchery fish. By mid September, approximately 1.3% of all hatchery fish survived, compared to 7.8%–31.5% for wild fish. This six to 24 times difference in survival could negate an estimated increased egg-to-smolt survival of about 13% that is theorized to result through the use of a hatchery. Estimates of the early marine survival are approximate, but sufficient to show a dramatic difference in the response of the two rearing types to the marine nursery area. If the declining trend in production continues for both rearing types, modifications to the hatchery program are needed to improve survival or an emphasis on improving the abundances of wild stocks is necessary, or both. The discovery that the juvenile Cowichan River chinook salmon remain within a relatively confined area of the Gulf Islands within the Strait of Georgia offers an excellent opportunity to research the mechanisms that cause the early marine mortalities and hopefully contribute to a management that improves the production.     

Trophic relationships of nonnative brown trout, Salmo trutta, and native Bonneville cutthroat trout, Oncorhynchus clarkii utah, in a northern Utah, USA river

Nonnative trout invasions have caused the widespread decline of cutthroat trout populations in western North America. In contrast to other nonnative salmonids, the role of nonnative brown trout in native cutthroat trout decline is poorly understood. Specifically, the level of ecological similarity that occurs between these species and the importance of other trophic mechanisms (e.g., predation) in their interactions are key uncertainties. We evaluated the trophic relationships of brown trout and cutthroat trout in a northern Utah river using a combination of diet and stable isotope analyses. We compared the dietary habits of these two species using multiple and complementary measures. Based on both stomach contents and δ¹³C signatures, we found that these species consumed a similar and opportunistic diet (i.e., they were nonselective in their foraging patterns). However, at most sizes, brown trout ingested larger prey—including fishes—and occupied a higher relative trophic position (i.e., δ¹⁵N) than cutthroat trout. Overall, these results demonstrate a high degree of dietary similarity and therefore strengthen earlier conclusions regarding interspecific competition between these two species. Our study, when considered alongside the work of others, suggests there is potential for predatory interactions between these species (i.e., brown trout preying on small cutthroat trout). We believe that future research on brown trout–cutthroat trout interactions should consider predatory effects in greater detail.

Hierarchical genetic structure of native masu salmon populations in Hokkaido,Japan

Identification of the spatial extent of genetic structuring that may be influenced by evolutionary, ecological and historical factors is critical for effective conservation or management strategies. Masu salmon Oncorhynchus masou is commonly distributed in Far East, however, many local populations have been under threats of decline due to habitat destruction, overexploitation, and genetic introgression. To reveal the spatial genetic structure of native masu salmon populations in Hokkaido, masu salmon samples were collected from 16 rivers in which there was no official record of artificial releases of any masu salmon stock and were analyzed using 15 microsatellite loci. A Bayesian assignment test revealed that masu salmon populations were divided into two genetically distinct groups: the northeastern and southwestern groups. For within-group genetic structure, all populations, except for geographically proximate populations, were significantly different from each other. AMOVA revealed that genetic variation at among-group level based on groups identified assignment test was greater than that of groups based on geographic locations. There was no significant IBD for the 16 populations. However, the Mantel test revealed significant IBD for the northeastern group, but did not for the southwestern group. This study suggested that native masu salmon populations in Hokkaido exhibit a hierarchical genetic structure that is largely a result of their precise homing behavior. The results of this study also highlight the importance of defining populations by using genetic data rather than by using predefined populations based on geographic locations for the correct determination of genetic structure.     

Triploid progeny from a female Atlantic salmon × brown trout hybrid backcrossed to a male brown trout

A female Atlantic salmon × brown trout hybrid was backcrossed to a male brown trout. Electrophoretic analysis of diagnostic enzymes showed that the progeny were triploid. However, a few individuals were partially diploid.     

Three-dimensional microhabitat use by young pool-dwelling Atlantic salmon and brown trout

This study, conducted in deep pools in three rivers, is the first to show a clear three-dimensional habitat segregation in size groups (equivalent to age groups) of juvenile Atlantic salmon, Salmo salar, and brown trout, S. trutta. Young-of-the-year (YOY) held position near the river bed and the river bank; height above bottom and distance from river bank increased significantly with fish size. Brown trout held position significantly further from the substratum, and were on average closer to the river bank, than salmon. The vertical segregation of young salmonids was most evident among young trout, with YOY being closest to the bottom. This size-dependent segregation is probably a result of different outcomes of the trade-off between the conflicting interests of higher food availability and greater predation risk in the upper part of the water column. We suggest that intercohort predation and competitive interactions were the main reasons why YOY of both species and salmon yearlings held positions close to the river bed. We found no evidence of salmon and trout parr preferring particular water depths, as studies in shallow parts of rivers have suggested, as the correspondence of use and availability of microhabitats at different water depths was high in the pools. Copyright 1999 The Association for the Study of Animal Behaviour.     

Widespread hybridization between native Atlantic salmon, Salmo salar, and introduced brown trout, S. trutta, in eastern Newfoundland

Hybridization between native Atlantic salmon and introduced brown trout was found to occur at a mean frequency of 0.9% in Atlantic salmon populations in eastern Newfoundland. Hybrids were detected in five of the 10 watersheds studied, but consideration of sampling error suggests that they could have been present in the remaining five watersheds although they were not detected. The frequency found in the Newfoundland and other North American salmon populations is significantly greater than the 0.3% reported for salmon populations in the British Isles, and both are higher than frequencies observed in salmon populations in Sweden. The higher frequency in North America is in accord with the prediction that hybridization between species will be more frequent where one species is introduced than in areas where both are native.     

Multiple electrofishing as a mitigate tool for removing nonnative Atlantic brown trout (<Emphasis Type="Italic">Salmo trutta</Emphasis> L.) threatening a native Mediterranean brown trout population

In the native range of the brown trout (Salmo trutta L.) in Europe, the hybridization of native populations by nonnative domesticated strains introduced by stocking is one of the most serious threats to the long-term conservation of diversity within this species. With the objective of conserving and restoring the native gene pool, fishery managers are beginning to implement various management strategies at the local scale. Nevertheless, few case studies have been published that investigate the effectiveness of the various different conservation strategies for native brown trout populations. In the Chevenne Creek, a small French mountain stream, we tested the strategy of removing nonnative individuals by multiple electrofishing carried out by fishery managers in order to evaluate its feasibility and effectiveness for eliminating a nonnative population threatening a native population. Electrofishing produced major reductions in the nonnative population between 2006 and 2009, with 82–100% of nonnative individuals being removed over a period of 4 years. Nevertheless, despite multiple-electrofishing campaigns, this nonnative population was not entirely eradicated, and some natural recruitment persisted. The young of the year and subadults were less effectively removed than the adults. The results suggest that repeated electrofishing campaigns can be used by managers to reduce the nonnative brown trout population with the objective of conserving the native gene pool, but the removal operation must be continued for at least 4 consecutive years. This strategy, which is feasible in small streams, has to be followed by complementary operations to allow the restoration of a new, native, self-sustainable brown trout population.     

Hybridization between native white-spotted charr and nonnative brook trout in the upper Sorachi River,Hokkaido, Japan

Invasion status and impacts of nonnative brook trout (Salvelinus fontinalis) in a Hokkaido stream were investigated with field surveys and genetic analyses. Nonnative brook trout was detected in nine (41 %) of the 22 sampled reaches in three tributaries of the Sorachi River, Hokkaido, Japan. Based on the external pigmentation, twelve putative hybrids between brook trout and native white-spotted charr (Salvelinus leucomaenis) were collected in two reaches. Microsatellite and mitochondrial DNA data established that 58% of these hybrids were first-generation (F₁) progenies between male brook trout and female white-spotted charr. Our results suggest potential negative impacts of nonnative brook trout on native charr populations in Hokkaido through interspecific interactions.     

Organization and chromosomal location of the major histone cluster in brown trout,Atlantic salmon and rainbow trout

The major histone cluster (hisDNA) was mapped by fluorescent in situ hybridization (FISH) to mitotic chromosomes of Atlantic salmon, brown trout, and rainbow trout. The data reveal that in the three species hisDNA is tandemly repeated in a single locus. Southern blots of genomic DNA indicate that these clusters are representative of the vast majority of the histone genes in these species. Similar reiteration values were found among the three species. Genetic variability in the hisDNA was found only in brown trout for an EcoRI site.     

Reproduction of interspecific hybrids of Atlantic salmon and brown trout in a stream environment

1. Reproduction between Atlantic salmon males and interspecific hybrid Salmo salar × Salmo trutta females was monitored in a controlled flow channel diverted from a south European river located at the edge of Atlantic salmon natural geographic distribution in Europe. 2. Post‐F1 hybrids were viable and survived in the wild, at least until dispersal from redds. After transfer to hatchery conditions, 67% survived into the second year. 3. The hybrids possessed 98 chromosomes: two sets of Atlantic salmon(2n = 58) and one set of brown trout (n = 40) chromosomes. 4. The existence of a low proportion of allotriploid individuals can be expected in rivers where Atlantic salmon and brown trout populations coexist.     

Linear-no-threshold is a radiation-protection standard rather than a mechanistic effect model

The linear-no-threshold (LNT) controversy covers much more than the mere discussion whether or not “the LNT hypothesis is valid”. It is shown that one cannot expect to find only one or even the only one dose–effect relationship. Each element within the biological reaction chain that is affected by ionizing radiation contributes in a specific way to the final biological endpoint of interest. The resulting dose–response relationship represents the superposition of all these effects. Till now there is neither a closed and clear picture of the entirety of radiation action for doses below some 10 mSv, nor does clear epidemiological evidence exist for an increase of risk for stochastic effects, in this dose range. On the other hand, radiation protection demands for quantitative risk estimates as well as for practicable dose concepts. In this respect, the LNT concept is preferred against any alternative concept. However, the LNT concept does not necessarily mean that the mechanism of cancer induction is intrinsically linear. It could hold even if the underlying multi-step mechanisms act in a non-linear way. In this case it would express a certain “attenuation” of non-linearities. Favouring LNT against threshold-, hyper-, or sub-linear models for radiation-protection purposes on the one hand, but preferring one of these models (e.g. for a specific effect) because of biological considerations for scientific purposes on the other hand, does not mean a contradiction.     

Wild and hatchery reproduction of pink and chum salmon and their catches in the Sakhalin-Kuril region,Russia

In the Sakhalin-Kuril region hatchery culture of pink and chum salmon is of great importance compared to other regions of the Russian Far East. During the last 30 years the number of hatcheries increased two-fold, and significant advances were made in hatchery technologies. As a result, chum salmon capture in regions where hatcheries operate (southwestern and eastern Sakhalin coasts, and Iturup Island) was 9 times as high during 2006–2010 than during 1986–1990, whereas wild chum salmon harvest markedly declined. Recent dynamics in pink salmon catch appear to track trends in natural spawning in monitored index rivers, suggesting natural-origin pink salmon play a dominant role in supporting the commercial fishery. It remains uncertain as to whether hatcheries have substantially supplemented commercial catch of pink salmon in this region, and I recommend continued research (including implementing mass marking and recovery programs) before decisions are made regarding increasing pink salmon hatchery production. Location of hatcheries in spawning river basins poses problems for structuring a management system that treats hatchery and wild populations separately. Debate continues regarding the existence and importance of density-dependent processes operating in the ocean environment and the role hatcheries play in these processes. Loss of critical spawning habitat for chum salmon in the Sakhalin-Kuril region has lead to significant declines in their abundance. I conclude by recommending increases in releases of hatchery chum salmon numbers in the region to help recover depressed wild populations and provide greater commercial fishing benefits in the region.     

High incidence of Atlantic salmon × brown trout hybrids in a Lake District stream

Hypervariable minisatellite DNA single-locus profiling and mitochondrial DNA analysis revealed that 18.48% of juvenile Atlantic salmon Salmo salar in Troutbeck, a stream in the R. Leven catchment of the English Lake District, were hybrids between Atlantic salmon and brown trout S. trutta , and that hybridization was bidirectional.     

Home range of juvenile Atlantic salmon, Salmo salar, and brown trout, Salmo trutta, in a Norwegian stream

SUMMARY. 1. The sizes of home ranges of juvenile Atlantic salmon (age 1 +) and brown trout (age 2+ to 9+) in a Norwegian coastal stream were estimated by local movements of batch-marked fish from 12.5 and 25 m long sections. Only recoveries made in the release section and in up-and downstream neighbouring sections were considered.
2. There was no significant difference in the average percentage of recaptures of salmon and trout between 12.5 and 25 m sections; a stream area of about 40–50 m² defines the size of home range for stocks of both species.
3. The fraction of brown trout recaptured in release sections increased with increasing fish densities, indicating a smaller home range under these conditions.     

The problem of sampling families rather than populations: relatedness among individuals in samples of juvenile brown trout Salmo trutta L.

In species exhibiting a nonrandom distribution of closely related individuals, sampling of a few families may lead to biased estimates of allele frequencies in populations. This problem was studied in two brown trout populations, based on analysis of mtDNA and microsatellites. In both samples mtDNA haplotype frequencies differed significantly between age classes, and in one sample 17 out of 18 individuals less than 1 year of age shared one particular mtDNA haplotype. Estimates of relatedness showed that these individuals most likely represented only three full-sib families. Older trout exhibiting the same haplotypes generally were not closely related.     

The discovery-dominance trade-off is the exception, rather than the rule

1. Interspecific trade-offs are thought to facilitate coexistence between species at small spatial scales. The discovery-dominance trade-off, analogous to a competition-colonisation trade-off, is considered an important structuring mechanism in ant ecology. A trade-off between species' ability to discover food resources and to dominate them may explain how so many species apparently dependent on similar resources can coexist. 2. The discovery-dominance trade-off is thought to be broken by invasive species in enemy-free space or territorial species whose activity is fuelled by domination of carbohydrate resources. It may also be mediated by factors such as temperature and habitat structure. 3. We investigate the generality and form of the discovery-dominance relationship in an experiment using habitats of contrasting complexity across three continents. In addition, to assess how widespread the discovery-dominance trade-off is, we conducted a systematic review combining all empirical studies (published and from our experiment). 4. From our own fieldwork and meta-analyses of available studies, we find surprisingly little empirical support for the trade-off, with results indicating that mean effect sizes were either not significantly different from 0 or significantly positive. The trade-off was only detected in studies with parasitoids present. Additionally, experimental data from simple and complex habitats within each continent suggest that simple habitats may facilitate both food resource discovery and dominance. 5. We conclude that the discovery-dominance trade-off is the exception, rather than the rule. Instead, these abilities were commonly correlated. Real food resources provide many axes along which partitioning may occur, and discovery-dominance trade-offs are not a prerequisite for coexistence.     

Y-chromosomal diversity in Europe is clinal and influenced primarily by geography, rather than by language

Clinal patterns of autosomal genetic diversity within Europe have been interpreted in previous studies in terms of a Neolithic demic diffusion model for the spread of agriculture; in contrast, studies using mtDNA have traced many founding lineages to the Paleolithic and have not shown strongly clinal variation. We have used 11 human Y-chromosomal biallelic polymorphisms, defining 10 haplogroups, to analyze a sample of 3,616 Y chromosomes belonging to 47 European and circum-European populations. Patterns of geographic differentiation are highly nonrandom, and, when they are assessed using spatial autocorrelation analysis, they show significant clines for five of six haplogroups analyzed. Clines for two haplogroups, representing 45% of the chromosomes, are continentwide and consistent with the demic diffusion hypothesis. Clines for three other haplogroups each have different foci and are more regionally restricted and are likely to reflect distinct population movements, including one from north of the Black Sea. Principal-components analysis suggests that populations are related primarily on the basis of geography, rather than on the basis of linguistic affinity. This is confirmed in Mantel tests, which show a strong and highly significant partial correlation between genetics and geography but a low, nonsignificant partial correlation between genetics and language. Genetic-barrier analysis also indicates the primacy of geography in the shaping of patterns of variation. These patterns retain a strong signal of expansion from the Near East but also suggest that the demographic history of Europe has been complex and influenced by other major population movements, as well as by linguistic and geographic heterogeneities and the effects of drift.