Ecosystem respiration and organic carbon processing in a large,tidally influenced river: the Hudson River

We estimated whole-ecosystem rates of respiration over a 40-km stretch of the tidally influenced freshwater Hudson River every 2 to 3 weeks from May through November. We measured in situ concentrations of oxygen over depth at dusk and dawn at 10 stations spaced over this interval. The use of multiple stations allowed for the consideration of the influence of tidal advection of water masses. Respiration was estimated from the decrease in oxygen overnight with a correction for diffusive exchange of oxygen with the atmosphere. We estimated this flux of oxygen to or from the atmosphere using the measured oxygen gradient and a transfer velocity model which is a function of wind velocity.Integration of the data for the period of May through November yields an estimate of whole-ecosystem respiration of 591 g C m^–2 (S.E. = 66). That the standard error of this estimate is relatively low (11% of the estimate) indicates that the use of multiple stations adequately deals with error introduced through the advection of water between stations. The logarithm of average daily respiration rate was correlated with average daily temperature (p = 0.007;r ² = 0.62). We used this temperature-respiration relationship to derive an estimate of the annual respiration rate of 755 g C m^–2 yr^–1 (S.E. = 72). This estimate is moderately sensitive to the estimated flux of oxygen between the atmosphere and water; using the lower and upper 95% confidence limits of our model relating the transfer velocity of oxygen to wind speed gives a range of annual respiration estimates from 665 g C m^–2 yr^–1 to 984 g C m^–2 yr^–1.The river is strongly heterotrophic, with most respiration driven by allochthonous inputs of organic matter from terrestrial ecosystems. The majority of the allochthonous inputs to the river (over 60%) are apparently metabolized within the river. Any change in allochthonous inputs due to changes in land use or climate patterns would be expected to alter the oxygen dynamics and energy flow within this tidally influenced river.     

Chaos and the (un)predictability of evolution in a changing environment

Among the factors that may reduce the predictability of evolution, chaos, characterized by a strong dependence on initial conditions, has received much less attention than randomness due to genetic drift or environmental stochasticity. It was recently shown that chaos in phenotypic evolution arises commonly under frequency‐dependent selection caused by competitive interactions mediated by many traits. This result has been used to argue that chaos should often make evolutionary dynamics unpredictable. However, populations also evolve largely in response to external changing environments, and such environmental forcing is likely to influence the outcome of evolution in systems prone to chaos. We investigate how a changing environment causing oscillations of an optimal phenotype interacts with the internal dynamics of an eco‐evolutionary system that would be chaotic in a constant environment. We show that strong environmental forcing can improve the predictability of evolution by reducing the probability of chaos arising, and by dampening the magnitude of chaotic oscillations. In contrast, weak forcing can increase the probability of chaos, but it also causes evolutionary trajectories to track the environment more closely. Overall, our results indicate that, although chaos may occur in evolution, it does not necessarily undermine its predictability.     

Population dynamics and economic losses caused by Zeuzera pyrina,a cryptic wood‐borer moth,in an olive orchard in Egypt

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Dendritic synchrony and transient dynamics in a coupled oscillator model of the dopaminergic neuron

Transient increases in spontaneous firing rate of mesencephalic dopaminergic neurons have been suggested to act as a reward prediction error signal. A mechanism previously proposed involves subthreshold calcium-dependent oscillations in all parts of the neuron. In that mechanism, the natural frequency of oscillation varies with diameter of cell processes, so there is a wide variation of natural frequencies on the cell, but strong voltage coupling enforces a single frequency of oscillation under resting conditions. In previous work, mathematical analysis of a simpler system of oscillators showed that the chain of oscillators could produce transient dynamics in which the frequency of the coupled system increased temporarily, as seen in a biophysical model of the dopaminergic neuron. The transient dynamics was shown to be consequence of a slow drift along an invariant subset of phase space, with rate of drift given by a Lyapunov function. In this paper, we show that the same mathematical structure exists for the full biophysical model, giving physiological meaning to the slow drift and the Lyapunov function, which is shown to describe differences in intracellular calcium concentration in different parts of the cell. The duration of transients was long, being comparable to the time constant of calcium disposition. These results indicate that brief changes in input to the dopaminergic neuron can produce long lasting firing rate transients whose form is determined by intrinsic cell properties.     

A systemic view of biodiversity and its conservation: processes, interrelationships, and human culture: presentation of a systemic view of biodiversity and its conservation that emphasizes complex interrelationships among subsystems and includes human culture

Historically, views and measurements of biodiversity have had a narrow focus, for instance, characterizing the attributes of observable patterns but affording less attention to processes. Here, we explore the question: how does a systems thinking view – one where the world is seen as elements and processes that connect and interact in dynamic ways to form a whole – affect the way we understand biodiversity and practice conservation? We answer this question by illustrating the systemic properties of biodiversity at multiple levels, and show that biodiversity is a collection of dynamic systems linking seemingly disparate biological and cultural components and requiring an understanding of the system as a whole. We conclude that systems thinking calls traditional views of species, ecosystem function, and human relationships with the rest of biodiversity into question. Finally, we suggest some of the ways in which this view can impact the science and practice of conservation, particularly through affecting our conservation targets and strategies.     

The Proportion of Empneuston and Total Atmospheric Inputs of Carbon,Nitrogen and Phosphorus in the Nutrient Budget of a Small Mesotrophic Lake (Piburger See,Austria)

Litter and wet traps were employed to determine the inputs of coarse organic matter (empneuston), total organic carbon, total nitrogen and phosphorus through dry fallout and precipitation to a soft-water, mesotrophic lake. The dispersal of airborne material over the lake surface was investigated, and a method for the calculation of total input was developed. The component of the particulate matter larger than 1 mm contained the largest proportion of organic carbon, while the dissolved and the fine particle (smaller than 1 mm) fractions made greater contributions to the inputs of nitrogen and phosphorus compounds. The importance of the large particle fraction of the airborne organic matter in the lake's nutrient budget during the autumnal fall of litter was confirmed. However, the maximum total airborne input seems to occur during spring and summer. The input of phosphorus compounds through the atmosphere to small forest lakes is large compared to that from other sources. Airborne material accounts for 39% of the total phosphorus loading.     

Delineating the respective impacts of stochastic curl- and grad-forces in a family of idealized core genetic commitment circuits

Stochastic dynamics pervades gene regulation. Despite being random, the dynamics displays a kind of innate structure. In fact, two stochastic forces combine driving efforts: one force originates from the gradient of the underlying stochastic potential, and the other originates from the mathematical curl of the probability flux. The curl force gives rise to rotation. The gradient force gives rise to drift. Together they give rise to helical behavior. Here, it is shown that around and about the vicinity of attractive fixed points, the gradient force naturally wanes but the curl force is found to remain high. This leads to a locally noticeably different type of stochastic track near and about attractive fixed points, compared to tracks in regions where drift dominates. The consistency of this observation with the experimental fact that, in biology, fate commitment appears to not be a-priory locked-in, but rather necessitating active maintenance, is discussed. Hence attractive fixed-points are not only fuzzy, but may effectively be, locally, “more free”.     

Consequence of omitting or adding a meal in man on body composition, food intake, and metabolism

Objective: To investigate in man the consequence on body composition and related biological and metabolic parameters of omitting or adding a meal. Research Methods and Procedures: Twenty‐four young normal‐weight male subjects were recruited, 12 usual four‐meal and 12 usual three‐meal eaters, differing only in the consumption of an afternoon meal. They omitted or added a fourth meal during a 28‐day habituation period and were asked to report their intake on three 3‐day occasions. Before and after this habituation period, subjects participated in a session with a time‐blinded procedure, and blood was collected continuously from lunch to the spontaneously requested dinner. Body composition, respiratory quotient, and biochemical parameters were measured in the late evening preceding each session. Results: Omitting a meal was followed by increases in fat mass (360 ± 115 grams, p < 0.05), late evening leptin concentration (20.7 ± 11.0%, p < 0.05), and respiratory quotient (3.7 ± 1.4%, p < 0.05). Increase in the percentage of dietary fat during the habituation period (+4.1 ± 2.0%, p < 0.05) was correlated with fat mass (r = 0.66, p < 0.05). Adding a meal had no effect, but, in both groups, the change in energy content at this fourth eating occasion was correlated with the change in adiposity. Discussion: Our results suggest that adiposity may increase when young lean male subjects switch from a four‐ to a three‐meal pattern by removing their usual afternoon meal. This effect could be partly mediated by a change in the macronutrient composition of the diet.     

Structural asymmetry in biotic interactions as a tool to understand and predict ecological persistence

A universal feature of ecological systems is that species do not interact with others with the same sign and strength. Yet, the consequences of this asymmetry in biotic interactions for the short- and long-term persistence of individual species and entire communities remains unclear. Here, we develop a set of metrics to evaluate how asymmetric interactions among species translate to asymmetries in their individual vulnerability to extinction under changing environmental conditions. These metrics, which solve previous limitations of how to independently quantify the size from the shape of the so-called feasibility domain, provide rigorous advances to understand simultaneously why some species and communities present more opportunities to persist than others. We further demonstrate that our shape-related metrics are useful to predict short-term changes in species' relative abundances during 7 years in a Mediterranean grassland. Our approach is designed to be applied to any ecological system regardless of the number of species and type of interactions. With it, we show that is possible to obtain both mechanistic and predictive information on ecological persistence for individual species and entire communities, paving the way for a stronger integration of theoretical and empirical research.     

Crouched posture and high fulcrum, a principle in the locomotion of small mammals: The example of the rock hyrax (Procavia capensis) (Mammalia: Hyracoidea)

The cineradiographic study of the locomotion of the rock hyrax (Procavia capensis) and the functional interpretation of its locomotory system, reveals that the main action of proximal segments is combined with flexed position and low movements of limb joints. This observation can be applied to the locomotion of other small mammals. In the forelimb, scapular rotation and translation account for more than 60% of step length. Effective shoulder joint movements are mostly restricted to less than 20°, and elbow movements range mainly between 20°-50°. The detachment of the shoulder girdle of therian mammals from the axial skeleton, and development of a supraspinous fossa, are correlated with movements at a high scapular fulcrum. Movements at such a high fulcrum are in interdependency with a crouched posture. Only flexed limbs can act as shock absorbers and prevent vertical changes in the center of gravity. Basic differences in forelimb movements exist between larger primates (humeral retraction) and smaller mammals (scapula retraction). In the hyrax, propulsion is due mainly to hip joint movements in symmetrical gaits, but sagittal lumbar spine movements play the dominant role at in-phase gaits. Joint and muscular anatomy, especially of the shoulder region, are discussed in view of the kinematic data.     

Quasi-periodic behaviour in a model for the lithium-induced,electrical oscillations of frog skin

The fact that oscillations can be induced in studies of the maintenance of the electrical potential of frog skin by addition of lithium allowed evaluation of several parameters fundamental to the functioning of the system in vivo (e.g. relative volumes of internal compartments, characteristic times of ionic exchanges between compartments). A realistic model was thus proposed under the form of a set of ordinary differential equations. In the past, numerical simulations using such a model reproduced the periodic experimental oscillations and was able to provide an explanation for the global synchronised oscillations of the whole skin. In that paper, new numerical simulations reproduce the non-periodic oscillations which were observed two decades ago, but not reproduced by the model. Moreover, the dynamical process under which all the local oscillators are synchronised is explained in terms of a tangent bifurcation.     

Identification of Arsenobetaine,a Water Soluble Organo-arsenic Compound in Muscle and Liver of a Shark,Prionace glaucus

After male rats of the Sprague Dawley strain, 5 weeks old, were fed a 20% casein diet for 12 days, 70 mg of streptozotocin/kg body weight (STZ group) or 70 mg of streptozotocin and 500 mg of nicotinamide/kg body weight (STZ-Nam group) was injected intraperitoneally into the rats. The rats were kept for 21 more days on the 20% casein diet and killed by decapitation. Urine was collected for the last 2 days. The level of blood glucose was 2-fold higher in the STZ group than in the STZ-Nam group. Urinary excretion of large amounts of glucose was observed only in the STZ group. Extremely reduction of urinary excretion of nicotinamide was observed in the STZ group, but, urinary excretion of N¹-methylnicotinamide (MNA) and N-¹-methyl-2-pyridone-5-carboxamide (2-py) was about the same in the two groups and that of N¹-methyl-4-pyridone-3-carboxamide (4-py) was higher in the STZ group than in the STZ-Nam group. The sum of urinary excretion of nicotinamide, MNA, 2-py, and 4-py was higher in the STZ group than in the STZ-Nam group. The levels of NAD in liver, pancreas, and blood in the STZ group tended to be higher, or rather not to decrease compared to the STZ-Nam group. For enzyme activities concerned with the tryptophan-NAD metabolism, a marked increase was observed in the activities of aminocarboxymuconate-semialdehyde decarboxylase, 3-hydroxyanthranilic acid oxygenase, and nicotinamide methyltransferase, on the other hand, the activity of NAD⁺ synthetase decreased in the STZ group compared to the STZ-Nam group. The activities of tryptophan oxygenase, kynureninase, NMN adenylyltransferase, and MNA oxidase were about the same in the two groups. These changes in the above enzyme activities mean that the conversion ratio from tryptophan to NAD is lower in the streptozotocin diabetic rats than normal rats, but the tryptophan metabolites such as NAD and 4-py were higher in the STZ group than in the STZ-Nam group. This might be due to the higher food intake and the lower body weight gain in the STZ group than in the STZ-Nam group. Similar phenomena have reported in alloxan diabetic rats.     

Seasonal fluctuations of aerobic cellulolytic bacteria,and cellulase and respiratory activities in a soil profile under a forest

The amount of cellulase activity and¹⁴CO₂ evolution declined with profile depth. These properties varied seasonally, being highest in autumn and lowest in winter. Cytophaga hutchinsonii andCytophaga rubra were the most common species of cellulolytic bacteria found by the dilution-plate method;Bacillus circulans andCellulomonas fimi were also isolated.Cellulolytic bacterial numbers-¹⁴CO₂ evolution, cellulolytic bacterial numbers-cellulase activity and¹⁴CO₂ evolution-cellulase activity were correlated positive-linear and significantly.     

中国内陆发现HCoV-HKU1感染及N和S蛋白基因序列及进化分析

了解冠状病毒HKU1在我国大陆地区的感染情况及N基因和S基因的编码特征。采用RT-PCR的方法对2005年10月~2006年1月收集的260例急性呼吸道感染的住院儿童鼻咽抽吸物(NPA)进行了冠状病毒HKU1基因检测。将PCR阳性产物测序,并将所测序列在GenBank中进行比较分析。260份样本中共检测到2份冠状病毒HKU1阳性,阳性率为0.77%(2/260),且该2例冠状病毒HKU1阳性患者临床均表现为肺炎症状。扩增其中一株病毒N和S全基因,并进行测序,与GenBank中的冠状病毒HKU1参考株及冠状病毒科其它成员进行序列同源性和进化树分析,并对N和S蛋白的结构与功能进行了初步的预测分析。由此表明我国大陆地区存在冠状病毒HKU1感染,且可能与儿童下呼吸道感染存在相关性。     

Composition and structure of a chronosequence of young, mixed-species forests in southeastern Ohio, USA

Clearcutting, a commonly used silvicultural practice in southeastern Ohio, often results in a forest stand with a different species composition than the parent stand. The time frames during which shifts in species composition occur on different sites are unclear. While some studies have documented species composition at specific points in time, none have attempted to examine differences throughout the first decades of stand development. This study focused on the early successional dynamics of young, mixed-species forests of southeastern Ohio. Species compositions were examined across a chronosequence of sixteen stands that developed following clearcutting. Stand ages ranged from six to 26 years. The sample was limited to dry-mesic hardwood forests on southerly aspects and on soils derived from residuum or colluvium. Across the chronosequence, stand density ranged from 17 636 stems ha^-1 at age 6 to 2759 stems ha^-1 at age 26, and basal area ranged from 8.2 m² ha^-1 to 22.1 m² ha^-1. Clumps comprised a substantial portion of the total stand density and basal area. At age 6–8 years after clearcutting, clumped stems accounted for 35.1% of the density and 48.2% of the basal area. At age 26 years, these proportions were 25.7% and 29.4%, respectively. Clumped stems were significantly larger (p<0.05) than non-clumped stems at each age group except 26 years. Total Quercus spp. density was greatest at age 6–8 years (3386 stems ha^-1), and least at age 26 years (581 stems ha^-1). When considered as a proportion of the total stand, however, the proportion was relatively stable, averaging 21.3%. However, importance value (IV=[relative density + relative basal area]/2) of Quercus in the upper canopy (dominant and codominant crown classes) was twice as much (72%) at age 26 years compared to age 6–8 years (35%). Quercus prinus L. was the major species across the chronosequence. For all age groups except 18–20 years. Q. prinus IV was the highest of any individual species in the upper canopy, and it ranged from 27 in the youngest stands (6–8 years) to 69 in the oldest stand (26 years). Within the intermediate crown class, the IV of Q. prinus equaled or exceeded those of all other species, except for the 18–20 year age group where it was second to A. rubrum. Quercus alba L. and Quercus velutina Lam. were minor components at age 26 years, although they dominated a comparison sample of six mature stands of the same ecosystem type. Liriodendron tulipifera L. was abundant 6–8 years after clearcutting, but nearly absent at age 26 years. Acer rubrum L. was the major species in both the intermediate and overtopped crown classes throughout the chronosequence. As gaps in the canopy occur. A. rubrum may become a more common species within the dominant-codominant crown class.     

Life histories ofNeomysis integer,and its copepod prey,Eurytemora affinis,in a eutrophic and brackish shallow lake

Data was collected on the population structure and fecundity of the mysidNeomysis integer and the calanoid copepodEurytemora affinis in Hickling Broad, a shallow and eutrophic brackish lake, over a two-year period 1988/89. Standing biomass and production rate estimates were made using estimates of size-specific dry weights and development times obtained from laboratory measurements, field observations and information found in the literature. Both mysid and copepod are capable of a rapid response to favourable conditions and have high rates of birth, growth and production.E. affinis reproduces throughout the year with an estimated annual (May 1988–May 1989) production of 20 g dry wt m⁻². Copepod standing biomass was less in 1989 compared with 1988 owing to an overall reduction in copepod body-size and a reduction of size at maturity. There was a suggestion from the data that this was caused by predation from a greater number of large (>9 mm body-length) mysids in 1989 compared with 1988.N. integer is highly seasonal in its growth with distinct peaks of recruitment in May and July. Annual (May 1988–May 1989) production of the mysid was estimated as 5.8 g dry wt m⁻². AlthoughE. affinis is the only available prey ofN. integer in the lake, the mysid population appears independent of changes in that of the copepod and probably avoids negative predator-prey feedback mechanisms owing to an ability to feed on epiphytic algae.     

Decadal vegetation changes in a northern peatland, greenhouse gas fluxes and net radiative forcing

Thawing permafrost in the sub‐Arctic has implications for the physical stability and biological dynamics of peatland ecosystems. This study provides an analysis of how permafrost thawing and subsequent vegetation changes in a sub‐Arctic Swedish mire have changed the net exchange of greenhouse gases, carbon dioxide (CO₂) and CH₄ over the past three decades. Images of the mire (ca. 17 ha) and surroundings taken with film sensitive in the visible and the near infrared portion of the spectrum, [i.e. colour infrared (CIR) aerial photographs from 1970 and 2000] were used. The results show that during this period the area covered by hummock vegetation decreased by more than 11% and became replaced by wet‐growing plant communities. The overall net uptake of C in the vegetation and the release of C by heterotrophic respiration might have increased resulting in increases in both the growing season atmospheric CO₂ sink function with about 16% and the CH₄ emissions with 22%. Calculating the flux as CO₂ equivalents show that the mire in 2000 has a 47% greater radiative forcing on the atmosphere using a 100‐year time horizon. Northern peatlands in areas with thawing sporadic or discontinuous permafrost are likely to act as larger greenhouse gas sources over the growing season today than a few decades ago because of increased CH₄ emissions.     

Hierarchy,spatial configuration,and nutrient cycling in a desert stream

Abstract Recent studies of nutrient cycling in Sycamore Creek in Arizona, USA, suggest that a thorough understanding requires a spatially explicit, hierarchical approach. Physical configuration determines the path that water follows as it moves downstream. Water follows flowpaths through surface stream components, the hyporheic zone beneath the surface stream, and the parafluvial (sand bar) zone. Characteristic biogeochemical processes in these subsystems alter nitrogen (N) species in transport, in part as a function of available concentrations of N species. At several hierarchical levels, substrate materials are an important determinant of nitrogen dynamics in desert streams. Sand is present in bars of variable size and shape, each of which can be considered a unit, interacting with the surface stream. Groups of these stream-sandbar units form a higher level, the reach. At the next higher scale, sandy reaches (runs) alternate with riffles. Where flowpaths converge, rates of N transformation are high and, as a result, change in concentration is a non-linear function of flowpath length. Disturbance by flash floods alters sandbar configuration. Between floods, the interaction of subsurface and surface flowpaths shapes configuration in each, thus a self-organizing element of spatial structure exists. Sandy runs are dominated by subsurface processes and are likely to be net nitrifiers while riffles are dominated by surface flow and are nitrogen fixers. Whether a stream ecosystem retains nitrogen, or transports it to downstream recipient systems, or is a net emitter of gaseous forms of N, depends upon the dynamics of a spatial mosaic of interacting elements. An understanding of the net effect of this mosaic requires a spatially explicit, hierarchical, multi-scale approach.     

Fluctuating recruitment and variable life history of migratory brown trout, Salmo trutta L., in a small, unstable stream

The recruitment dynamics and life history of migratory brown trout, Sulmo trutta L., were investigated in a small Baltic coast stream subject to recurring drought. Spawning males consisted of both mature male parr (101–206 mm t.l. ) and migrant males (205–780 mm t.l. ). Spawning females were all migrants which delayed maturity until reaching a significantly greater size on average (424–805 mm t.l. ) than migrant males. Male: female ratios were very high in spawning aggregations (9–12 males: 1 female) with males representing up to five year-classes or more. Gametes from several generations of males per spawning event may be important for maintaining the genetic viability of this population with few female spawners per year. The amount of spawning was dependent on precipitation just prior to and during the spawning period since migrants could not enter the stream under drought conditions. Migrants did not overwinter in the stream.
Drought also caused variable fry mortality following emergence in early summer. Recruitment of 0+ parr in autumn varied from c . 175 to 3000 during 3 years. Smolts were relatively young (ages 1–2) and small (≥8 cm), and were significantly longer on average than sibling parr. Yet emigration of 1-year-olds was not related to 0+ parr size the previous autumn because of overlapping growth rates.
Persistence of the migratory brown trout in this unstable environment may be the consequence of (i) life history adaptation (e.g. short freshwater residence of both juveniles and spawners), and (ii) a complementary set of individual life histories where variation in age of migrant spawners and the occurrence of mature male parr result in a stable spawner population despite inconsistent recruitment of migrants to the sea.     

Linking warming effects on phenology,demography, and range expansion in a migratory bird population

Phenological changes in response to climate change have been recorded in many taxa, but the population‐level consequences of these changes are largely unknown. If phenological change influences demography, it may underpin the changes in range size and distribution that have been associated with climate change in many species. Over the last century, Icelandic black‐tailed godwits (Limosa limosa islandica) have increased 10‐fold in numbers, and their breeding range has expanded throughout lowland Iceland, but the environmental and demographic drivers of this expansion remain unknown. Here, we explore the potential for climate‐driven shifts in phenology to influence demography and range expansion. In warmer springs, Icelandic black‐tailed godwits lay their clutches earlier, resulting in advances in hatching dates in those years. Early hatching is beneficial as population‐wide tracking of marked individuals shows that chick recruitment to the adult population is greater for early hatched individuals. Throughout the last century, this population has expanded into progressively colder breeding areas in which hatch dates are later, but temperatures have increased throughout Iceland since the 1960s. Using these established relationships between temperature, hatching dates and recruitment, we show that these warming trends have the potential to have fueled substantial increases in recruitment throughout Iceland, and thus to have contributed to local population growth and expansion across the breeding range. The demographic consequences of temperature‐mediated phenological changes, such as the advances in lay dates and increased recruitment associated with early hatching reported here, may therefore be key processes in driving population size and range changes in response to climate change.