The Friesner Herbarium (BUT) of Butler University

The Friesner Herbarium (BUT) of Butler University is a collection of over 100,000 specimens built from the personal herbarium of Ray C. Friesner. He and other botanists at Butler amassed one of the largest and most complete collections of Indiana plants. Active exchange from the 1920’s through the 1940’s increased the holdings of plants from other states. Although the collection does not contain many type specimens, it is rich in vouchers from floristic and ecological studies conducted in the first half of the 20th century and published in the scientific journal,Butler University Botanical Studies.     

Assessing the Relevance of Herbarium Collections as Tools for Conservation Biology

Herbarium collections constitute permanent and often well-documented records of the distribution of taxa through space and time. Since their creation, their uses have dramatically expanded and with many new uses being proposed, including some for which herbaria were not initially intended for. In this paper we assess the potential of these collections on conservation biology, by providing exemplary studies that use herbarium specimens, grouped into four categories: (1) based on occurrence data, such as studies about plant extinction or introduction, or those focused on modelling their ecological niche; (2) based on the specimens themselves, such as morphological or phenological studies to evaluate the impact of climate change; (3) based in genetic data, such as phylogeographic or taxonomical studies; and (4), other applied studies.     

Molecular phylogenies and mating study data in Polyporus with special emphasis on group “Melanopus” (Basidiomycota)

“Melanopus” is an unranked infrageneric group within Polyporus, a genus comprising wood-decaying homobasidiomycetes. This study compiles new information on the mating systems, phylogeny, and geographic distribution of the group. We report tetrapolar mating systems in “Melanopus,” as well as in the more distantly related Polyporus umbellatus. “Melanopus” is addressed using internal transcribed spacer (ITS) rDNA sequence data, comparing resolving power of several phylogenetic methods and depths of sequence information, including recoded secondary structure data informed by the primary sequence data. The latter, inferred structure of the ITS2 rRNA was insufficient in phylogenetic reconstruction on its own. Intercollection compatibility studies showed Polyporus varius collections from both sides of the Atlantic to be intercompatible, the same was found for Polyporus tubaeformis collections from California and Scotland. Molecular analysis supports P. tubaeformis conspecifity of Scottish and Californian collections with a Norwegian collection. Several other herbarium specimens inaccessible to successful PCR and sequencing were redetermined as P. tubaeformis by morphological characters. This improved on the current knowledge of distribution of the species, tentatively adding Idaho, North Carolina, and Germany’s Mecklenburg-Western Pomerania.Electronic supplementary material Supplementary material is available in the online version of this article at and is accessible for authorized users.     

Alexander von Humboldt’s fungal collections at Kew

Collections of three fungal species described from Germany by Alexander von Humboldt have been rediscovered in the mycological herbarium at Kew. These collections are considered lectotypes of Boletus patella, B. venosus, and Clavaria aurea and are assigned to Postia stiptica, Physisporinus vitreus, and Calocera viscosa respectively. Humboldt’s Central & South American collections are also at Kew and a list of specimens is appended. Based on the rediscovered type collection, Favolus humboldtii is considered a synonym of Polyporus tenuiculus.     

Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community

Advances in DNA extraction and next‐generation sequencing have made a vast number of historical herbarium specimens available for genomic investigation. These specimens contain not only genomic information from the individual plants themselves, but also from associated microorganisms such as bacteria and fungi. These microorganisms may have colonized the living plant (e.g., pathogens or host‐associated commensal taxa) or may result from postmortem colonization that may include decomposition processes or contamination during sample handling. Here we characterize the metagenomic profile from shotgun sequencing data from herbarium specimens of two widespread plant species (Ambrosia artemisiifolia and Arabidopsis thaliana) collected up to 180 years ago. We used blast searching in combination with megan and were able to infer the metagenomic community even from the oldest herbarium sample. Through comparison with contemporary plant collections, we identify three microbial species that are nearly exclusive to herbarium specimens, including the fungus Alternaria alternata, which can comprise up to 7% of the total sequencing reads. This species probably colonizes the herbarium specimens during preparation for mounting or during storage. By removing the probable contaminating taxa, we observe a temporal shift in the metagenomic composition of the invasive weed Am. artemisiifolia. Our findings demonstrate that it is generally possible to use herbarium specimens for metagenomic analyses, but that the results should be treated with caution, as some of the identified species may be herbarium contaminants rather than representing the natural metagenomic community of the host plant.     

Biological collections in an ever changing world: Herbaria as tools for biogeographical and environmental studies

Plant specimens stored in herbaria are being used as never before to document the impacts of global change on humans and nature. However, published statistics on the use of biological collections are rare, and ecologists lack quantitative data demonstrating the relevance to science of herbarium specimens. I found 382 studies with original data that used herbarium specimens to document biogeographical patterns or environmental changes. Most studies are less than 10 years old, and only 1.4% of the herbarium specimens worldwide have been used to answer biogeographical or environmental questions. The vast majority (82%) of papers dealt with vascular plants, but some studies also used bryophytes, lichens, seaweeds and fungi. The herbarium specimens were collected from all continents, but most of the studies used specimens from North America (40% of studies) or Europe (28%). Many types of researches (conservation, plant disease, plant invasion, pollution, etc.) can be conducted using herbarium specimens. Climate change, and especially phenological reconstructions, are clearly emerging research topics. By group, small herbaria (<100,000 specimens) are consulted as often as very large herbaria (>1,000,000 specimens) for biogeographical and environmental research, but in most cases, only large facilities provide specimens collected worldwide. The median number of specimens per study in papers using computerized collections (15,295) was much higher than for papers that did not include electronic data (226). The use of molecular analyses to investigate herbarium specimens is still relatively unexplored, at least from biogeographical and environmental points of view. Combined with recently developed procedures to correct biases, herbarium specimens might provide in the near future exciting additional spatio-temporal insights that are currently unimaginable.     

Les nodules du Carbonifère supérieur du Lagerstätte de Montceau-les-Mines,France : historique de la Collection Sotty 2

The Muséum national d’Histoire naturelle, Paris (France), housed in its palaeontological collections numerous fossil specimens from a French locality of exceptional fossil preservation: the Montceau-les-Mines Lagerstätte (Late Carboniferous). The collection on the Montceau-les-Mines Lagerstätte was given to the Museum of Paris in 1997. Under the MNHN direction, it is managed in the regional museum of Autun. It contains more than 100,000 nodules bearing animal and fossil plants, three-dimensionally preserved in sideritic concretions. These collections are computerized and regularly consulted and studied by scientists from the whole world.     

The Henry Parker Sartwell herbarium of Hamilton College

H. P. Sartwell's private herbarium was donated to the New York Botanical Garden in 1983 by Hamilton College of Clinton, New York. This herbarium was assembled by Dr. Sartwell (1792–1867) throughout his carcer and was eventually sold to Hamilton College. The collection is particularly rich in type material, western New York plants, and carices. Dr. Sartwell had an active exchange program with his contemporaries and, therefore, his herbarium also has collections from many parts of the world. An index to collectors is presented, as well as a list of verified and probable types.     

Herbarium studies on the distribution of anther-smut fungus (Microbotryum violaceum) and Silene species (Caryophyllaceae) in the eastern United States

We used herbarium specimens of Silene virginica, S. caroliniana, S. rotundifolia, and S. latifolia to survey the incidence of anther-smut disease (caused by Microbotryum violaceum sensu lato) in the eastern USA. We found no evidence of a collector bias against diseased specimens. Diseased specimens were frequently found in collections of S. virginica and S. caroliniana, but not in those of S. rotundifolia or S. latifolia. Disease incidence in S. virginica and S. caroliniana increased significantly over the past century and was higher in marginal populations. The absence of disease in specimens of S. rotundifolia is consistent with field observations, but its presence in natural populations of S. latifolia (especially in Virginia) suggests that the disease is recently introduced. Changes in the host distributions were also evident. The relative abundance of S. caroliniana declined over time (especially further north), while the relative abundance of S. virginica increased. Silene latifolia was absent or rare south of Pennsylvania before ca. 1920, indicating that S. latifolia and its anther smut are likely to be recent introductions in Virginia. Methods are also presented that quantify the completeness of coverage provided by herbarium specimens.     

A Comparative Analysis of Nineteenth Century Pharmacopoeias in the Southern United States: A Case Study Based on the Gideon Lincecum Herbarium<Superscript>1</Superscript>

A Comparative Analysis of Nineteenth Century Pharmacopoeias in the Southern United States: A Case Study Based on the Gideon Lincecum Herbarium. The Gideon Lincecum Herbarium represents the pharmacopoeia of Dr. Gideon Lincecum, a botanical physician practicing in Mississippi and Texas during the first half of the nineteenth century. The herbarium contains 313 specimens representing 309 species, 242 genera, and 96 families, and includes ethnobotanical annotations for 286 medicinal taxa. The collection data provided by Lincecum indicate that the specimens were collected between 1835 and 1852. With the exception of 22 specimens considered by Campbell (1951), this is the first study to place this pharmacopoeia in a historical context. Taxonomic determinations of the herbarium specimens were confirmed or corrected. Comparative analyses were conducted to investigate the relationship of Lincecum’s pharmacopoeia to those of six other medical traditions practiced in the southern United States during the nineteenth century. Cluster analyses based on Jaccard co-efficient placed the historical pharmacopoeias of medical traditions in the early nineteenth century into distinct Euro–American and American Indian groups. Despite the recognition of distinct allopathic and botanical medical traditions, an extensive overlap in the composition of their pharmacopoeias is observed. This may reflect the reliance of these traditions on allopathic principles and drugs of plant origin during the first half of the nineteenth century. In contrast, Cherokee, Chickasaw, Choctaw, and Creek pharmacopoeias show limited overlap with each other in composition despite a long history of interaction between these groups. Lincecum’s pharmacopoeia shares a larger Jaccard co–efficient value with the Choctaw pharmacopoeia than would be expected based on their placement in distinct Euro–American and American Indian groups in the dendrogram. The large proportion of Lincecum’s citations that reference Choctaw informants provides direct evidence for the incorporation of Choctaw medical knowledge and taxa into Lincecum’s pharmacopoeia. These data suggest that the composition of historical pharmacopoeias is influenced by both contemporary medical practices and the regional and cultural contexts in which the pharmacopoeias are utilized.     

Bryophytes and lichens in 16th-century herbaria

The diversity of bryophyte and lichen collections in 9 of the oldest preserved herbaria (dating from ca 1542 to 1577) was compared, including the first reports of bryophytes and lichens from the ‘En Tibi’ herbarium (possibly 1542–1544) and the herbarium of Leonhard Rauwolf (1560–1563). Bryophytes and lichens formed only a minority in each herbarium compared to the numbers of vascular plant specimens; numbers ranged from representatives of 21 genera in the herbarium of Ulisse Aldrovandi to the single genus Conocephalum in the Rauwolf herbarium. The focus was on large, handsome species of bryophytes and macrolichens, apart from small amounts of additional species collected as ‘by-catch’ in mixed collections. All herbaria together included 34 genera of bryophytes (36 species and 10 specimens identified to genus level) and 13 genera of lichens (24 species and 4 specimens identified to genus level). The diversity of mosses was higher than that of liverworts, and pleurocarpous mosses were more diverse than acrocarpous mosses. The collectors probably aimed at selecting material that was either characteristic of the vegetation in the respective areas of collecting or used for certain purposes (or both). The former hypothesis is supported by the small overlap in taxonomic diversity between the herbaria, and the latter by the fact that several moss, liverwort, and lichen genera are included whose traditional uses are well documented.     

A Revision of the genus Wislizenia (Capparidaceae) based on population studies

Morphological and cytological studies of mass collections from the southwestern United States and Baja California, and morphological studies on herbarium specimens from these areas and northern Mexico have been used to solve a taxonomic problem within the genusWislizenia. Canonical analysis of morphological data from mass collections separates three geographic groups from: California, Baja California, and states east of California. A similar analysis of herbarium specimens collected throughout the range ofWislizenia refracta confirms the reality of these groups, for which the status of subspecies is proposed: 1) subsp.californica from the California central valley, 2) subsp.palmeri from Baja California and the Sonoran coast, and 3 ) subsp.refracta from states east of California. This taxonomic treatment differs from any of the varied previous ones. Chromosome numbers for six of the mass collections were found to ben = 20, in agreement with other reports.     

The Bahamian Flora: Plant Exploration,Living Collections,and DNA – A Journey Started in 1963

Dr. John Popenoe was Director of Fairchild Tropical Botanic Garden (FTBG) between 1963 and 1989. Dr. Popenoe was a strong supporter of the Bahamian flora, and in 1963 he obtained extramural funds to develop a living collection focusing on Bahamian plants that was established in FTBG. During his tenure FTBG supported the publication of the latest comprehensive flora of this archipelago. A project initiated by the first FTBG herbarium curator, William Gillis, but published by Donovan and Helen Correll (with illustrations of Priscilla Fawcett) in 1982. This living collection of Bahamian plants has supplied plant material for molecular phylogenetic studies worldwide. There are DNA phylogenies for only 10 of the 89 Bahamian endemics; most of the material of these phylogenies came from plants from these collections (three species) and/or from fragments of herbarium specimens collected by Donovan Correll (six species). Only two of the species included in these phylogenies are from collections unrelated to FTBG. Excluding species restricted to the Bahamas, material from 14 Caribbean Island endemics that are part of these collections has been used in phylogenetic studies. The available molecular phylogenies show that the Bahamian endemics are closely related to species from the West Indies or continental areas of the Caribbean Basin. There is also a paucity of population genetic studies based on DNA markers focusing on Bahamian plants. Only two of the four available population genetic studies are for a Bahamian endemic taxon.     

吉林省针层孔属的初步研究

本文报道了吉林省针层孔属(Phellinus)的21种,其中新种2个:丁香针层孔(P.syringeus Zeng sp.nov.);硬盖针层孔(P.scleropilcatus Zeng sp.nov.);国内新纪录种3个(并一种为新组合):黄肉针层孔[P.rhabarbarinus(Berk.)Cunningh.];厚黑针层孔[P.euerhartii(Ell.&Gall)Ames];粗糙针层孔[P.rudis(Berk.)Zeng comb.nov.]。     

The herbarium of Paul A. Fryxell (pf) and U.S. Department of Agriculture, College Station, Texas, integrated into The New York Botanical Garden Herbarium (NY)

The herbarium specimens amassed by Paul A. Fryxell while working at the U.S. Department of Agriculture, College Station, Texas, were moved in October 1993 to The New York Botanical Garden and integrated into the Herbarium in 1994. The collection is particularly rich in specimens of the Malvaceae and other families of the Malvales, the areas of Fryxell’s taxonomic specialty. Also included is the cotton reference herbarium of the former Cotton Branch of the Agricultural Research Service, U.S. Department of Agriculture, which consists of voucher specimens of germplasm introductions of cotton (Gossypium) from expeditions and from test plots in the United States and Mexico. A total of 19,918 specimens, including 167 type specimens, have been incorporated into The New York Botanical Garden Herbarium.     

乔治·福雷斯特在中国采集的杜鹃花属植物

在历时二十八年的植物考察生涯中,乔治.福雷斯特曾7次来华,为西方园林和植物研究机构采集、引种了大量的动、植物材料,在他所采集的中国杜鹃花标本中,曾被有关研究者作为新种描述的名称多达400余个,至今仍有150多种为众多研究者所接受。福雷斯特的采集是杜鹃花属分类和区系研究中非常重要的素材。     

Analysis of digitized herbarium records and community science observations provides a glimpse of downy mildew species diversity of North America,reveals potentially undescribed species,and documents the need for continued digitization and collecting

Downy mildew diseases caused by Peronosporaceae cause significant crop losses globally, with several emerging and resurgent threats in recent decades. Biodiversity data from digitized herbarium specimens provide an opportunity to develop a baseline census of species diversity, however, these resources may represent aggregations of nonrandom and opportunistic collecting efforts, which could lead to spurious results. Here, the MyCoPortal census of digitized herbarium records for downy mildew species collected from North America 1800 to present were analyzed. From 9838 unique records, 196 species were identified, reflecting ∼28% of known species diversity. Temporal and geographic collecting biases were observed, with 90% of the collections made prior to 1960 and the efforts of six “super-collectors” accounting for 25% of the collections. The presence of 50–100 undescribed species in North America was inferred from the records. Together, these results highlight the need for continued downy mildew collections, taxonomic research and digitization efforts.