River confluences enhance riparian plant species diversity

In riparian zones along the banks of streams and rivers, flooding often causes large changes in environmental conditions immediately downstream of confluences. In turn, spatial heterogeneity in flooding along rivers and streams likely affects local species diversity. Furthermore, flooding during the plant growing season can strongly affect plant survival. In this study, we hypothesized that confluences have impacts on plant species diversity, and that these impacts are larger during the plant growing season. To test this hypothesis, we measured plant species diversity and the extent of natural bare ground at 11 river confluences during two different seasons (summer and spring) within the Mukogawa River basin system, Japan. Species diversity was highest at down-confluence areas in the summer. We linked the pattern of species diversity to that of bare ground creation by floods around the confluences and to the seasonality of annual plant recruitment. The extent of bare ground was significantly greater at down-confluence areas than at up-confluence areas. The recruitment of annual species was higher in the summer than in the spring and included rapid occupancy of bare ground in the summer. We suggest that within river systems, spatial and seasonal differences in patterns of flooding function together to regulate plant species diversity.     

Offspring performance in dynamic habitats: key factors for a riparian carabid beetle

Abstract.  1. Knowledge of the ecology of carabid species is largely restricted to adults, although larval mortality is assumed to be the key factor in overall mortality. As low-mobility larvae are unable to avoid unfavourable conditions, habitat selection of reproducing adults should be clearly affected by the habitat factors which determine offspring performance.
2. The present study examines the key habitat factors governing the distribution patterns of Bembidion velox larvae and adults on the river banks of the River Elbe by means of habitat suitability models. The validity of the determined habitat factors for offspring performance and survival was tested in laboratory experiments.
3. In the field, B. velox adults as well as larvae show a strong association with semi-terrestrial, sandy, open soil habitats.
4. In the laboratory, overall mortality of larvae reared in different substrates was lowest in sand of medium grain size mixed with fine and coarse sand. The first larval instars in particular reacted sensitively to variations in grain size. Furthermore, flood resistance of eggs was demonstrated, as 90% of larvae hatched under permanently flooded conditions.
5. Short development times were recorded, with 4–7 days for hatching of young larvae from eggs after oviposition and approximately 28 days for the development of adults from newly hatched larvae. This probably increases the survival probability for the pre-imaginal stages in dynamic habitats.
6. In conclusion, it can be said that reproductive success is strongly dependent on oviposition site selection by adults as this reflects the ecological demands of the immature stages.     

Cumulative annual dung beetle diversity in Mediterranean seasonal environments

Species diversity assessments should consider the dynamic nature of ecological communities, especially in highly seasonal ecosystems. Here we provide a comprehensive framework for analysing seasonal changes in species composition, richness and diversity in two local dung beetle (Coleoptera: Scarabaeoidea: Aphodiidae, Geotrupidae, and Scarabaeidae) communities from Western Tuscany (Italy), in the Mediterranean ecoregion. We test whether, in this highly seasonal region, cumulative annual diversity is an oversimplification of well differentiated seasonal communities. Data were obtained through repeated standardised samples collected regularly over an entire year. We clearly identify different summer and winter communities at each site based on species composition and abundance. Seasonal richness and diversity values are different from the cumulative annual values, as a consequence of beta diversity between seasons, and some dung beetle species are identified as idiosyncratic of each particular season. Both ecological (niche partitioning) and biogeographical factors are suggested as drivers of these temporal variations. Thus, because local inventories of fauna that include records over long time periods actually reflect situations where coexistence and interactions are unlikely to occur, highly seasonal sites must be viewed as having temporally differentiated communities in order to reach feasible and reliable baselines for local diversity assessments.     

Condition-dependent dispersal of a patchily distributed riparian ground beetle in response to disturbance

In common with many habitat elements of riverine landscapes, exposed riverine sediments (ERS) are highly disturbed, naturally patchy and regularly distributed, whose specialists are strongly adapted to flood disturbance and loss of habitat due to succession. Investigations of dispersal in ERS habitats therefore provide an important contrast to the unnaturally fragmented, stable systems usually studied. The present investigation analysed the three interdependent stages of dispersal: (1) emigration, (2) inter-patch movement and (3) immigration of a common ERS specialised beetle, Bembidion atrocaeruleum (Stephens 1828) (Coleoptera, Carabidae), in a relatively unmodified section of river, using mark–resight methods. Dispersal was correlated with estimates of local population size and density, water level and patch quality in order to test for condition-dependent dispersal cues. Flood inundation of habitat was found to increase strongly the overall rate of dispersal, and the rate of emigration was significantly higher from patches that were heavily trampled by cattle. Strongly declining numbers of dispersers with distance suggested low dispersal rates during periods of low water level. Dispersal in response to habitat degradation by cattle trampling would likely lead to a higher overall population fitness than a random dispersal strategy. Dispersal distances were probably adapted to the underlying habitat landscape distribution, high-flow dispersal cues and ready means of long-distance dispersal through hydrochory. Species whose dispersal is adapted to the natural habitat distribution of riverine landscapes are likely to be strongly negatively affected by reduced flood frequency and intensity and habitat fragmentation through flow regulation or channelisation.Electronic Supplementary Material Supplementary material is available to authorised users in the online version of this article at .     

Evaluating the use of Myotis daubentonii as an ecological indicator in Mediterranean riparian habitats

In recent years, interest and concern regarding biodiversity conservation have grown remarkably not only among conservationists but also amongst a wider public beyond scientific institutions. The monitoring of fauna and flora over long periods of time has been satisfactorily proven to be a viable tool for quantifying how environmental changes affect natural communities. Some bat species are regarded as good bioindicators, mainly due to their longevity and high sensitivity to environmental changes. Myotis daubentonii is one of the species most closely associated with riparian habitats in the north-east Iberian Peninsula, and is used as an ecological indicator in specific monitoring programs such as the Waterway Survey (United Kingdom) and the QuiroRius (Spain). Nonetheless, there is still great controversy as to whether M. daubentonii is a good biological indicator or not. While some authors accept it as a bioindicator, others point to the studies carried out in the U.K., Poland, Switzerland and Germany that show a remarkable increase in the numbers of this bat when pollution increases in canalized rivers, which suggest that it is in fact a generalist species.Due to the lack of information regarding habitat-quality requirements in Daubenton’s bats in the Mediterranean region and the species’ potential as a bioindicator in riparian habitats, we aimed to 1) examine how QuiroRius data match other well-established biological indicators (IBMWP for invertebrates and QBR for riparian forests); 2) analyse how environmental variables at both local and landscape scales affect the presence of M. daubentonii; and 3) describe how environmental traits influence the relative abundance of M. daubentonii.A total of 104 streams below 1000 m a.s.l. were simultaneously sampled using bat, macroinvertebrate and vegetation bioindicators. Despite having similar conservation aims, these three bioindicators did not provide consistent images of overall ecosystem quality and thus a multidisciplinary approach is necessary for a full analysis of the health of these riparian ecosystems. M. daubentonii were found more frequently in wide rivers with well-structured native riparian forests; on the other hand, landscape composition at broader scales and altitude had no influence on bat presence/abundance.Thus, we suggest that QuiroRius could be used as a complementary bioindicator for analysing riparian forest quality but cannot be used alone as a tool for evaluating correctly overall riparian ecosystem health. Both relative abundance and/or presence/absence could be used as bioindicator surrogates given that the effect of microhabitat environmental predictors had similar impact on both these measures.     

Landscape-scale crop diversity interacts with local management to determine ground beetle diversity

Crop diversification and maintenance of semi-natural habitats (grasslands and field boundaries) are suggested to enhance farmland biodiversity, but the relative importance of these factors remains poorly known. We evaluated how crop diversity and availability of semi-natural grasslands at a landscape-scale interacted with local farming management (three management types from low to high intensity: ley < winter wheat < sugar beet) in their effect on ground beetle assemblages in southern Sweden. Ground beetle diversity increased with crop diversity either independently of local management (Simpson species diversity), or only in the less intensively managed habitats (rarefied species richness). While ground beetle diversity in leys tended to increase with field boundary length, no such relationship was observed in winter wheat or sugar beet fields. In contrast, the landscape proportions of leys and semi-natural grasslands did not affect ground beetle species richness and diversity. We conclude that (a) semi-natural grasslands and leys may not function as source habitats at a landscape-scale if they comprise a low proportion of the total land-use, while (b) increasing crop diversity is correlated to ground beetle richness and diversity in agricultural landscapes dominated by arable land. The beneficial effect of landscape-scale crop diversification on farmland biodiversity may depend on the general level of agricultural intensity of a region.     

Biodiversity in agricultural landscapes: the ground beetle communities of woody uncultivated habitats

Agricultural landscapes can be defined as mosaics of landscape elements which are affected by farming practices. Woodland habitats, even though they are managed, are amongst the most stable elements of agricultural landscapes and can play a key role in the maintenance of biodiversity. This study of the ground beetle (carabid) communities of woodlands and woody linear features in a Scottish agricultural landscape shows that these habitats contribute significantly to the overall landscape diversity of these beetles. Communities in woods and hedgerows display the same species diversity and are both characterized by the presence of forest species. The main factors constraining carabid communities in both environments are the grazing intensity and, to a lesser extent, the type of soil. Heavily grazed locations are characterized by the occurrence of grassland species while forest species are restricted to ungrazed locations. At the landscape scale, the distribution of the forest species is limited by spatial isolation, indicating that there are insufficient functional links between woodland habitats in the study area. Isolation could be compensated for either by a better control of grazing so that linear features can be used as dispersal corridors for forest carabids or by planting more linear features and woods in the area.     

Effects of flow regime alteration on fluvial habitats and riparian quality in a semiarid Mediterranean basin

The Segura River Basin is one of the most arid and regulated zones in the Mediterranean as well as Europe that includes four hydrologic river types, according to their natural flow regime: main stem rivers, stable streams, seasonal streams and temporary streams. The relationships between flow regime and fluvial and riparian habitats were studied at reference and hydrologically altered sites for each of the four types. Flow regime alteration was assessed using two procedures: (1) an indirect index, derived from variables associated with the main hydrologic pressures in the basin, and (2) reference and altered flow series analyses using the Indicators of Hydrologic Alteration (IHA) and the Indicators of Hydrologic Alteration in Rivers (IAHRIS). Habitats were characterized using the River Habitat Survey (RHS) and its derived Habitat Quality Assessment (HQA) score, whereas riparian condition was assessed using the Riparian Quality Index (RQI) and an inventory of riparian native/exotic species. Flow stability and magnitude were identified as the main hydrologic drivers of the stream habitats in the Segura Basin. Hydrologic alterations were similar to those described in other Mediterranean arid and semiarid areas where dams have reduced flow magnitude and variability and produced the inversion of seasonal patterns. Additionally, the Segura Basin presented two general trends: an increase in flow torrentiality in main stems and an increase in temporality in seasonal and temporary streams. With the indirect alteration index, main stems presented the highest degree of hydrologic alteration, which resulted in larger channel dimensions and less macrophytes and mesohabitats. However, according to the hydrologic analyses, the seasonal streams presented the greatest alteration, which was supported by the numerous changes in habitat features. These changes were associated with a larger proportion of uniform banktop vegetation as well as reduced riparian native plant richness and mesohabitat density. Both stream types presented consequent reductions in habitat and riparian quality as the degree of alteration increased. However, stable streams, those least impacted in the basin, and temporary streams, which are subject to great hydrologic stress in reference conditions, showed fewer changes in physical habitat due to hydrologic alteration. This study clarifies the relationships between hydrologic regime and physical habitat in Mediterranean basins. The hydrologic and habitat indicators that respond to human pressures and the thresholds that imply relevant changes in habitat and riparian quality presented here will play a fundamental role in the use of holistic frameworks when developing environmental flows on a regional scale.     

Explaining the saproxylic beetle diversity of a protected Mediterranean area

Saproxylic beetle diversity is high at the Cabañeros National Park (central Spain), where woodland habitats exhibit remarkable heterogeneity. Our aim was to explain the diversity of saproxylic beetles, focusing on species turnover among mature woodland types. We surveyed five woodland types that represented the heterogeneity of the park’s woodland habitats. Beetles were collected using window traps over a period of 20 months. The Jaccard Similarity Index was used as indirect value of beta diversity among woodlands and to test the relation between species turnover and geographical distance. We also identified the contribution of species turnover to landscape diversity by using a partitioning model. Moreover, the presence of mixed woodlands (more than one tree species) allowed us to attempt to valorise the effect of tree species (coupled with their historical management) on species turnover among woodlands. Finally, we looked for different saproxylic beetle preferences for habitat and tree species using an indicator value method. We found that saproxylic beetle species composition varied significantly among the studied woodlands. The variation in species turnover was independent from the distance among woodlands, which suggested that beetle dispersal abilities could not explain this high turnover. Tree species within woodlands were a key factor that increased diversity turnover in woodlands and, consequently, the diversity of the park. Moreover, we found saproxylic beetle species that had different habitat and tree species preferences. We conclude that woodland heterogeneity (highly affected by woodland composition) seems to be the driving force for saproxylic beetle diversity in this protected area.     

Forest cover and heterogeneous pastures shape the diversity of predatory rove beetles in tropical riparian habitats

In tropical landscapes, forest remnants have been reduced to narrow strips of vegetation along rivers and streams surrounded by agricultural land that affects biodiversity, depending on the habitat and landscape characteristics. To assess the effect of riparian forest loss on the diversity of Staphylininae predatory rove beetles, we considered two habitat conditions (river sites with riparian vegetation and sites with heterogeneous pastures) within two micro-basin types (with >70% and <40% forest cover) in a tropical montane cloud forest landscape, Mexico. Beetles were collected using baited pitfall traps during the rainy season of 2014. No differences were found between micro-basin types and, although species richness (⁰D) was similar between habitat conditions, when the diversity of common (¹D) and dominant (²D) species was considered, sites with heterogeneous pastures were almost twice as diverse as those with riparian vegetation. All diversity measurements were greater in sites with heterogeneous pastures of either micro-basin type. Air temperature and canopy cover were the environmental variables that best explained the variation in beetle species composition. The greatest environmental differences related to species composition were detected between habitat conditions and were more evident in sites with heterogeneous pastures and low forest cover in the surroundings. The results suggest that replacing riparian vegetation with heterogeneous pastures, within micro-basins that lost between 30% and 60% of their forest cover, does not significantly reduce the diversity of predatory rove beetle but rather modifies the beetle composition. Effective formulation of management strategies to mitigate the impact of land use modification therefore requires an understanding of the interaction between vegetation remnants and landscape characteristics.     

Genetic diversity and population divergence in fragmented habitats: Conservation of Idaho ground squirrels

The Idaho ground squirrel, which consists of a northern (Spermophilus brunneus brunneus) and a southern subspecies (S. b. endemicus), has suffered from habitat loss and fragmentation, resulting in a reduction in both numbers and geographic range of the species. The northern Idaho ground squirrel (NIDGS) is listed as a threatened subspecies under the Endangered Species Act, and the southern Idaho ground squirrel (SIDGS) is a candidate. Because Idaho ground squirrel populations are small and often isolated, they are susceptible to inbreeding and loss of genetic diversity through drift. This research evaluates levels of genetic diversity and patterns of population divergence in both subspecies of Idaho ground squirrels. We hypothesized that NIDGS would exhibit lower genetic diversity and greater population divergence due to a longer period of population isolation relative to most SIDGS populations. Genetic diversity and divergence were quantified using 8 microsatellite loci. Contrary to expectations, SIDGS populations exhibited consistently lower levels of microsatellite diversity. Additionally, NIDGS exhibited only modest divergence among populations, while divergence levels among SIDGS populations were highly varied. Preliminary evaluations of mitochondrial DNA diversity and structure revealed lower diversity in NIDGS and some differences in gene flow that warrant further study. Based on our results, we suggest different management strategies for the two subspecies. Habitat restoration appears to be the most desirable conservation strategy for NIDGS populations. In contrast, low genetic diversity observed in SIDGS may warrant supplementation of isolated populations through translocations or captive breeding to mitigate further loss of genetic variability.     

Long-term responses in population dynamics and diversity of small mammals in riparian and upland habitats within an agricultural landscape

Riparian zones in agricultural landscapes provide linear non-crop habitats for a variety of plant and mammal species, and hence are an important component of biodiversity. To date, variable responses of abundance, species richness, and species diversity of small mammals have been recorded in riparian and upland habitats. To address this variability, we provide a detailed analysis of seasonal changes in abundance and diversity of terrestrial small-mammal communities over a 7-year period within an agricultural landscape in south-central British Columbia, Canada. We tested the hypotheses (H) that abundance, species richness, and species diversity of communities of small mammals (H₁), and demographic parameters of reproduction, recruitment, and survival of the major species: deer mouse (Peromyscus maniculatus) and montane vole (Microtus montanus) (H₂), would be higher in riparian than upland habitats. Mean total abundance of small mammals was higher in summer and winter, and species richness higher in summer, in riparian than hedgerow habitats. Winter population data supported the total and species abundance patterns for small mammals, but species richness was similar, and diversity lower, in riparian than hedgerow sites during winter periods. Deer mice were the dominant species in terms of abundance and reproductive output for pregnancies and recruitment, but not survival, in riparian sites. Montane voles were similar in abundance and demographic parameters in the two habitats. House mice (Mus musculus) preferred hedgerows and wandering shrews (Sorex vagrans) riparian sites. Demographic parameters for deer mice and montane voles indicated that both riparian and hedgerow sites were “source” rather than “sink” habitats, and likely contribute to maintenance of mammal diversity in agricultural landscapes.     

Effect of landscape structure on the spatial distribution of Mediterranean dung beetle diversity

Aim  Landscape structure influences the distribution of animals, altering their movements and their ability to reach habitat patches. We analysed the spatial patterns of dung beetle species diversity in three differently structured natural landscapes in a Mediterranean protected area in the centre of the Iberian Peninsula.
Location  Cabañeros National Park, Central Spain.
Methods  Diversity components within (α) and among (β) the three main vegetation types in the reserve were compared by using a hierarchical nested design. These were forests, scrublands and grasslands embedded in three different landscapes, where each was the most dominant and structurally connected habitat.
Results  Species richness of grassland habitat did not vary across landscapes, but forest habitat showed lower species richness in the grassland-dominated landscape. Scrubland was the least species-rich habitat, but here again there was no significant variation across landscapes. However, in all cases, there was a significant influence of habitat context (configuration of habitat patches within landscape matrix) on similarity of species composition. These tended to be more similar to the dominant landscape matrix where they were embedded, rather than to the same habitat type in other landscapes. Additive partitioning of diversity showed higher than expected values of β in all landscapes, which indicated a structured response. Highest values of β in the grassland-dominated landscape suggest that this was the least connected landscape for dung beetles.
Main conclusions  Our results suggest that in homogeneous conditions of climate and trophic resources, landscape structure may well be more important than habitat type as a determinant of dung beetle distribution in the Mediterranean.     

Phylogenetic diversity and antimicrobial activities of bryozoan-associated bacteria isolated from Mediterranean and Baltic Sea habitats

To date, only a small number of investigations covering microbe–bryozoa associations have been carried out. Most of them have focused on a few bryozoan species and none have covered the antibacterial activities of associated bacteria. In the current study, the proportion and phylogenetic classification of Bryozoan-associated bacteria with antimicrobial properties were investigated. Twenty-one specimens of 14 different bryozoan species were collected from several sites in the Baltic and the Mediterranean Sea. A total of 340 associated bacteria were isolated, and 101 displayed antibiotic activities. While antibiosis was predominantly directed against Gram-positive test strains, 16S rRNA gene sequencing revealed affiliation of the isolates to Gram-negative classes (Flavobacteria, Alpha- and Gammaproteobacteria). One isolate was related to the Gram-positive Actinobacteria. The sequences were grouped into 27 phylotypes on the basis of similarity values ≥99.5%. A host-specific affiliation was not revealed as members of the same phylotype were derived from different bryozoan species. Site-specific patterns, however, were demonstrated. Strains of the genera Sphingomonas and Alteromonas were exclusively isolated from Mediterranean sites, whereas Shewanella, Marinomonas and Vibrio-related isolates were only from Baltic sites. Although Pseudoalteromonas affiliated strains were found in both habitats, they were separated into respective phylotypes. Isolates with 16S rDNA similarity values <98%, which could possibly represent new species, belonged to the genera Shewanella, Pseudoalteromonas and Tenacibaculum.     

Trophic diversity of the otter (Lutra lutra L.) in temperate and Mediterranean freshwater habitats

Aim To analyse the geographical patterns in the composition and diversity of otter's (Lutra lutra L.) diet and their relationship with climatic characteristics. Location European freshwater habitats under Mediterranean and temperate climatic regimes. Methods Thirty‐seven otter diet studies were reviewed, twenty‐one from temperate and sixteen from Mediterranean areas. All studies were based on spraint analysis and their results expressed as relative frequency of occurrence of seven main prey categories. Principal Component Analysis was performed to extract the main gradients of diet composition. Pearson's correlation and t‐tests were used to assess the relationship between diet characteristics (composition, diversity and taxonomic richness) and geographical and climatic variables. Results A clear latitudinal gradient in diet composition was observed. Otter diet was more diverse and featured more prey classes in southern localities, while the species was more piscivorous towards the north, where it predated upon a higher number of fish families. This pattern was similar when temperate and Mediterranean localities of Europe were compared. Mediterranean otters behaved as more generalist predators than temperate ones, relying less on fish, and more on aquatic invertebrates and reptiles. Main conclusions Geographical differences in otter feeding ecology in Europe seem to be related with the two contrasted climatic conditions affecting prey populations. The otter can act as a highly specialized piscivorous predator in temperate freshwater ecosystems, which do not suffer a dry season and have a comparatively stable water regime compared to Mediterranean ones. However, the unpredictable prey availability in Mediterranean areas, affected by strong spatial and temporal water shortages, favours a diversification of the otter's diet.     

Vascular plant and ground beetle diversity on wet arable land versus conventional crop fields

While artificial farmland drainage has allowed the development of a highly productive agriculture, the availability of periodically flooded arable land as a niche habitat for a broad range of animal and vascular plant species has diminished. Accordingly, many species depending on temporary wetlands are endangered, already extinct or extirpated in Switzerland and other European countries. Some arable fields with temporary pools can still be observed in Switzerland. However, it is not known how suitable such small temporary ponds are as habitats in the modern, intensively-managed agricultural landscape, where disturbance rates are high, and connecting wetland habitats are scarce. We surveyed 120 fields across 10 hot spot regions for potential waterlogging in Switzerland, investigating the effect of temporary waterlogging on the diversity of arable plant and ground beetle species. Half of the fields were heavily influenced by waterlogging, while the other half represented conventional crop field controls. We found that wet fields exhibited a higher number of vascular plant and carabid species on average compared to control fields. This difference was explained by the presence of more hygrophilic plant and ground beetle species on wet fields. While we did find more hygrophilic species on wet fields, the threatened character species of temporary wetland habitats were mostly absent despite availability in regional species pools. These results suggest that temporary pools still provide the raw environmental characteristics that hygrophilic species require in the agricultural landscape. However, alternative management schemes are required to transform them into habitats that can effectively support high-priority, threatened species of temporary wetlands.     

Vegetative communities as indicators of ground beetle (Coleoptera: Carabidae) diversity

Accurately measuring biodiversity is essential for successful conservation planning. Due to biodiversity’s complexity, specific taxa are often chosen as indicators of patterns of diversity as a whole. Such taxa can include vegetation which can inform conservation decisions by demarcating land units for management strategies. For land units to be useful, they must be accurate spatial representations of the species assemblages present on the landscape. In this study, we determined whether land units classified by vegetative communities predicted the community structure of a diverse group of invertebrates—the ground beetles (Coleoptera: Carabidae). Specifically, that (1) land units of the same classification contained similar carabid species assemblages and that (2) differences in species structure were correlated with variation in land unit characteristics, including canopy and ground cover, vegetation structure, tree density, leaf litter depth, and soil moisture. The study site, the Braidwood Dunes and Savanna Nature Preserve in Will County, Illinois is a mosaic of differing land units. Carabid beetles were sampled continuously with pitfall trapping for 1 year (excluding winter) from September 2011 to November 2011 and from March 2012 to September 2012. Land unit characteristics were measured in July 2012. Nonmetric multidimensional scaling (NMDS) ordinated the land units by their carabid species assemblages into five ecologically meaningful clusters: disturbed, marsh, prairie, restoration, and savanna. The subset of land unit characteristics with the highest rank correlation with the NMDS ordination included soil moisture, leaf litter depth, percentage of canopy cover, and percentage of grass ground cover. Land units classified by vegetative communities effectively represented carabid species assemblages.