Evolutionary History and Stress Regulation of Plant Receptor-Like Kinase/Pelle Genes

Receptor-Like Kinase (RLK)/Pelle genes play roles ranging from growth regulation to defense response, and the dramatic expansion of this family has been postulated to be crucial for plant-specific adaptations. Despite this, little is known about the history of or the factors that contributed to the dramatic expansion of this gene family. In this study, we show that expansion coincided with the establishment of land plants and that RLK/Pelle subfamilies were established early in land plant evolution. The RLK/Pelle family expanded at a significantly higher rate than other kinases, due in large part to expansion of a few subfamilies by tandem duplication. Interestingly, these subfamilies tend to have members with known roles in defense response, suggesting that their rapid expansion was likely a consequence of adaptation to fast-evolving pathogens. Arabidopsis (Arabidopsis thaliana) expression data support the importance of RLK/Pelles in biotic stress response. We found that hundreds of RLK/Pelles are up-regulated by biotic stress. Furthermore, stress responsiveness is correlated with the degree of tandem duplication in RLK/Pelle subfamilies. Our findings suggest a link between stress response and tandem duplication and provide an explanation for why a large proportion of the RLK/Pelle gene family is found in tandem repeats. In addition, our findings provide a useful framework for potentially predicting RLK/Pelle stress functions based on knowledge of expansion pattern and duplication mechanism. Finally, we propose that the detection of highly variable molecular patterns associated with specific pathogens/parasites is the main reason for the up-regulation of hundreds of RLK/Pelles under biotic stress.     

The Receptor-Like Kinase SIT1 Mediates Salt Sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice

High salinity causes growth inhibition and shoot bleaching in plants that do not tolerate high salt (glycophytes), including most crops. The molecules affected directly by salt and linking the extracellular stimulus to intracellular responses remain largely unknown. Here, we demonstrate that rice (Oryza sativa) Salt Intolerance 1 (SIT1), a lectin receptor-like kinase expressed mainly in root epidermal cells, mediates salt sensitivity. NaCl rapidly activates SIT1, and in the presence of salt, as SIT1 kinase activity increased, plant survival decreased. Rice MPK3 and MPK6 function as the downstream effectors of SIT1. SIT1 phosphorylates MPK3 and 6, and their activation by salt requires SIT1. SIT1 mediates ethylene production and salt-induced ethylene signaling. SIT1 promotes accumulation of reactive oxygen species (ROS), leading to growth inhibition and plant death under salt stress, which occurred in an MPK3/6- and ethylene signaling-dependent manner in Arabidopsis thaliana. Our findings demonstrate the existence of a SIT1-MPK3/6 cascade that mediates salt sensitivity by affecting ROS and ethylene homeostasis and signaling. These results provide important information for engineering salt-tolerant crops.     

A Putative Leucine-Rich Repeat Receptor-Like Kinase of Jute Involved in Stress Response

A putative leucine-rich repeat receptor-like protein kinase (LRR-RLK) gene together with its 5′ and 3′ untranslated regions of jute (Corchorus olitorius L.) has been identified and sequenced. The gene is 3,371 bp long containing two exons and one intron. The coding sequence of the gene is 2,879 bp long encoding a peptide of 957 amino acids. The predicted protein contains several domains and motifs characteristic of a transmembrane protein kinase. It is complete with domains for an N-terminal leucine-rich repeat and a protein kinase core, an active site for serine/threonine protein kinase, an ATP binding conserved site and a transmembrane region. Expression of the gene is induced by low temperature, high salt concentration, dehydration, abscisic acid treatment, and fungal infection, suggesting the involvement of the gene in multiple stress response pathways in jute (C. olitorius L.). A possible mechanism of the role of the gene in signal transduction and environmental stress response is discussed. To date, LRR-RLK is the only jute gene which has been completely sequenced and characterized.     

Changes in Oil Accumulation and Fatty Acid Composition of Soybean Seeds under Salt Stress in Response to Salicylic Acid and Jasmonic Acid

greenhouse experiment with factorial arrangement based on randomized complete block design with four replications was conducted in 2015 to evaluate the effects of salicylic acid (SA) (1 mM) and jasmonic acid (JA) (0.5 mM) on oil accumulation and fatty acid composition of soybean oil (Glycine max L.) under salt stress (Non-saline, 4, 7, and 10 dS/m NaCl). Oil percentage of soybean seeds declined, while oil content per seed enhanced with increasing seed filling duration. Foliar application of SA improved oil content per soybean seed at different stages of development under all salinity levels. Although JA treatment enhanced seed oil percentage, oil yield of these plants decreased as a result of reduction in seed yield per plant. In contrast, the highest oil yield was recorded for SA treated plants, due to higher seed yield. Salinity had no significant effects on percentage of palmitic acid and stearic acid, but treatment with JA significantly reduced stearic acid percentage. Oleic acid content of seeds increased, but percentages of linoleic acid, linolenic acid and unsaturation index (UI) of soybean oil decreased with increasing salinity. Foliar application of SA and JA improved oil quality of soybean seeds by reducing oleic acid and enhancing linoleic acid, linolenic acid contents and UI. Exogenous application of SA had the most beneficial effects on soybean seeds due to enhancing oil yield and quality under saline and non-saline conditions.     

茉莉酸生物合成的调控及其信号通路

茉莉酸类化合物作为一种细胞信号分子,在植物的生长发育、机械损伤、代谢调节及诱导防御相关基因表达等方面起着重要的作用。本文概述了茉莉酸的生物合成调控以及人们目前对茉莉酸信号通路的认识,并对该研究领域存在的问题及今后可能的研究方向进行展望。     

Phosphorylation and Stabilization of Arabidopsis MAP Kinase Phosphatase 1 in Response to UV-B Stress

MAP kinase phosphatases (MKPs) are important regulators of the activation levels and kinetics of MAP kinases. This is crucial for a large number of physiological processes during development and growth, as well as interactions with the environment, including the response to ultraviolet-B (UV-B) stress. Arabidopsis MKP1 is a key regulator of MAP kinases MPK3 and MPK6 in response to UV-B stress. However, virtually nothing is presently known about the post-translational regulation of plant MKPs in vivo. Here, we provide evidence that MKP1 is a phosphoprotein in vivo and that MKP1 accumulates in response to UV-B stress. Moreover, proteasome inhibitor experiments suggest that MKP1 is constantly turned-over under non-stress conditions and that MKP1 is stabilized upon stress treatment. Stress-responsive phosphorylation and stabilization of MKP1 demonstrate the post-translational regulation of a plant MKP in vivo, adding an additional regulatory layer to MAP kinase signaling in plants.     

拟南芥AtR8 lncRNA对盐胁迫响应及其对种子萌发的调节作用

长链非编码RNA (lncRNA)是一类长度大于200个核苷酸且不编码蛋白质的非编码RNA, 主要由RNA聚合酶II转录生成, 大量存在于生物体内并具有多种生物学功能。AtR8 lncRNA是拟南芥(Arabidopsis thaliana)中RNA聚合酶III转录的长链非编码RNA。前期研究发现, 水杨酸(SA)处理诱导萌发种子中AtR8 lncRNA的表达, AtR8 lncRNA缺失抑制SA胁迫下的种子萌发。进一步研究发现, AtR8 lncRNA转录区域内存在保守的盐胁迫响应元件(TCTTCTTCTTTA); NaCl处理抑制萌发种子中AtR8 lncRNA的表达; 与野生型相比, 高浓度NaCl处理明显抑制了atr8 (AtR8 lncRNA部分缺失型拟南芥)种子萌发。研究结果表明, AtR8 lncRNA在拟南芥种子萌发期的盐胁迫中起重要作用。     

The Apoplastic Copper AMINE OXIDASE1 Mediates Jasmonic Acid-Induced Protoxylem Differentiation in Arabidopsis Roots

Polyamines are involved in key developmental processes and stress responses. Copper amine oxidases oxidize the polyamine putrescine (Put), producing an aldehyde, ammonia, and hydrogen peroxide (H₂O₂). The Arabidopsis (Arabidopsis thaliana) amine oxidase gene At4g14940 (AtAO1) encodes an apoplastic copper amine oxidase expressed at the early stages of vascular tissue differentiation in roots. Here, its role in root development and xylem differentiation was explored by pharmacological and forward/reverse genetic approaches. Analysis of the AtAO1 expression pattern in roots by a promoter::green fluorescent protein-β-glucuronidase fusion revealed strong gene expression in the protoxylem at the transition, elongation, and maturation zones. Methyl jasmonate (MeJA) induced AtAO1 gene expression in vascular tissues, especially at the transition and elongation zones. Early protoxylem differentiation was observed upon MeJA treatment along with Put level decrease and H₂O₂ accumulation in wild-type roots, whereas Atao1 loss-of-function mutants were unresponsive to the hormone. The H₂O₂ scavenger N,N¹-dimethylthiourea reversed the MeJA-induced early protoxylem differentiation in wild-type seedlings. Likewise, Put, which had no effect on Atao1 mutants, induced early protoxylem differentiation in the wild type, this event being counteracted by N,N¹-dimethylthiourea treatment. Consistently, AtAO1-overexpressing plants showed lower Put levels and early protoxylem differentiation concurrent with H₂O₂ accumulation in the root zone where the first protoxylem cells with fully developed secondary wall thickenings are found. These results show that the H₂O₂ produced via AtAO1-driven Put oxidation plays a role in MeJA signaling leading to early protoxylem differentiation in root.Root development is affected by several environmental stresses that may result in the inhibition of root growth and/or the modulation of differentiation pattern. It is not surprising, then, that a complex network of hormonal signals control root architecture under either physiological or stress growth conditions, since in changing environments plants take advantage of root developmental plasticity. Thus, it is reasonable that root growth and vascular development can be either conveniently coordinated or selectively modulated in growing roots depending on specific plant needs, in order to ensure the appropriate water absorption and nutrient uptake in heterogenous soils with varying resource availability.During root vascular development, pericycle/vascular meristematic stem cells differentiate into procambial cell lineages, including protoxylem and metaxylem, intervening procambium, phloem, and pericycle (Mähönen et al., 2006; Petricka et al., 2012). Coordinated events of secondary cell wall deposition and programmed cell death (PCD) characterize the last stage of both protoxylem and metaxylem vessel maturation (Ohashi-Ito and Fukuda, 2010). It is well known that, under physiological conditions, an array of auxin, cytokinin, and brassinosteroid signaling pathways participate in root tissue differentiation (Petricka et al., 2012; Mähönen et al., 2014). Specifically, it has been proposed that vascular patterning is finely regulated by a feedback loop between auxin and cytokinin signaling pathways occurring through mutual inhibition (Bishopp et al., 2011; Perilli et al., 2012; Petricka et al., 2012). Brassinosteroids have also been shown to induce root growth and promote xylem differentiation by driving the entry of xylem precursors into the final stage of tracheary element differentiation (Yamamoto et al., 1997). Recently, reactive oxygen species (ROS) have been described to play a key role in the transition from cell proliferation to tissue differentiation in the root (Tsukagoshi et al., 2010), independently from the auxin/cytokinin feedback loop mentioned above. Indeed, while superoxide anion is required to maintain cell proliferation in the meristem, hydrogen peroxide (H₂O₂) is required for tissue differentiation in the elongation/differentiation zone.However, less attention has been devoted to xylem differentiation under stress growth conditions, when resource availability and/or water supply may be restrictive, creating the need for a rearrangement of root architecture and vascular differentiation. In this regard, an alteration of the temporal pattern of xylem differentiation was observed in roots of soybean (Glycine max) plants upon saline stress, with a delay in primary xylem differentiation and a precocious formation of secondary xylem (Hilal et al., 1998). Moreover, significant anatomical changes were observed to occur in roots of Agave salmiana under water stress, among them a reduction of vessel number and an increase of xylem diameter and wall thickness (Peña-Valdivia and Sánchez-Urdaneta, 2009). The rearrangement of root vascular tissues has also been reported to occur as a defense reaction against pathogen invasion, such as the regeneration of xylem vessels observed in a Fusarium spp. wilt-resistant carnation (Dianthus caryophyllus ‘Novada’) upon fungal infection to compensate for local vascular dysfunction (Baayen, 1986) as well as the vascular tissue redifferentiation revealed in Arabidopsis (Arabidopsis thaliana) plants following nematode invasion in order to counteract mechanical pressure (Møller et al., 1998). Moreover, xylem regeneration around a wound has been described in maize (Zea mays) seedling stems (Aloni and Plotkin, 1985).Of note, previous studies reported that the stress signaling hormone jasmonic acid (JA), while inducing root growth inhibition (Ren et al., 2009), behaves as a promoter of early vascular tissue differentiation (Cenzano et al., 2003) and xylogenesis (Fattorini et al., 2009). The role of JA in vascular tissue differentiation was first revealed in stolons of potato (Solanum tuberosum) during the tuberization process. In particular, exogenous JA accelerated potato tuber formation via the induction of both cell expansion and early differentiation of protoxylem vessels with ring-shaped secondary wall thickenings, leading to increased movement of nutrients toward the stolon tip (Cenzano et al., 2003). Moreover, exogenous methyl jasmonate (MeJA) was reported to enhance the formation of adventitious roots and the development of xylogenic nodules in tobacco (Nicotiana tabacum) thin layers under root-inductive hormonal conditions (Fattorini et al., 2009).The polyamines (PAs) putrescine (Put), spermidine (Spd), and spermine (Spm) are small aliphatic polycations ubiquitous in living organisms and essential for cell growth, proliferation, and differentiation (Tavladoraki et al., 2012). In plants, PAs have been involved in a multiplicity of developmental processes as well as stress responses and tolerance strategies, their intracellular and extracellular levels varying in response to different physiological and pathological conditions (Mattoo et al., 2010). A fine regulation of their metabolism and/or transport ensures the occurrence of the appropriate PA levels depending on the specific cell needs (Tavladoraki et al., 2012). Oxidative deamination of PAs is catalyzed by amine oxidases (AOs) in a multistep mechanism, with the release of the removed amine moiety and amino aldehydes in the oxidative phase and the production of H₂O₂ in the reoxidation step of the reduced enzyme (Tavladoraki et al., 2012). Although AOs are a heterogenous class of enzymes varying in subcellular localization, tissue expression pattern, substrate specificity, and mode of catalysis, they share roles in both the homeostasis of PAs and the production of H₂O₂, the latter representing a common product in the AO-driven oxidative catabolism of PAs (Cona et al., 2006; Tavladoraki et al., 2012). On the basis of the cofactor involved, AOs can be classified into two subclasses: the copper amine oxidases (CuAOs), showing high affinity for Put, and the FAD-dependent polyamine oxidases (PAOs), whose preferred substrates are Spd, Spm, and/or their acetyl derivatives (Cona et al., 2006; Tavladoraki et al., 2012). In Arabidopsis, five PAO genes (AtPAOs) and 10 CuAO genes (AtCuAOs) were identified by database search and in some cases characterized at the protein level (Fincato et al., 2011; Planas-Portell et al., 2013; Ahou et al., 2014; Kim et al., 2014). Among CuAO genes, At4g14940 (The Arabidopsis Information Resource [TAIR] accession no. 2129519), here designed as AtAO1 (formerly ATAO1; Møller and McPherson, 1998), encodes an extracellular protein found in apoplastic fluids of Arabidopsis rosettes, as demonstrated by mass spectrometry analysis (Boudart et al., 2005).H₂O₂ derived from the extracellular catabolism of PAs by cell wall-localized AOs has been shown to be involved in both developmental processes, such as the light-induced inhibition of mesocotyl growth (Cona et al., 2003) and the PCD occurring in differentiating tracheary elements (Tisi et al., 2011b), as well as defense responses during wound healing (Angelini et al., 2008), salt stress (Moschou et al., 2008), and pathogen attack (Moschou et al., 2009). In this regard, AOs have also been suggested to act as stress-responsive genes whose expression strongly increases in response to both pathogen infection and abiotic stresses (Moschou et al., 2008; Tavladoraki et al., 2012). During the plant response to stresses, a faster apoplastic oxidation of PAs has been supposed to occur, allowed by the concurrent increase of PA secretion and catabolism in the cell wall, and the PA-derived H₂O₂ has been demonstrated to trigger signal transduction pathways leading to the induction of defense gene expression, stress tolerance, or PCD (Moschou et al., 2008; Tisi et al., 2011a). Recently, the dual role of PAs as either signaling compounds or the source of the second messenger H₂O₂ has been highlighted, and it has been hypothesized that AOs may have a role in PA/H₂O₂ balance (Moschou et al., 2008; Tisi et al., 2011a, 2011b). In fact, the coordinated modulation of PA metabolism and secretion in the cell wall may represent a crucial mechanism in the control of the PA-H₂O₂ ratio, which has been suggested to be a significant player in fixing cell fate and behavior under stress conditions (Moschou et al., 2008; Tisi et al., 2011a).It is worth noting that the H₂O₂ derived from the apoplastic PA catabolism has been shown to be involved in JA-dependent wound signaling pathways, behaving as a mediator of cell wall-stiffening events during wound healing (Cona et al., 2006; Angelini et al., 2008). Moreover, it has been reported recently that PA-derived H₂O₂ inhibits root growth and promotes xylem differentiation, inducing both cell wall-stiffening events and developmental PCD (Tisi et al., 2011a, 2011b). Indeed, Spd treatment in maize or overexpression of maize PAO (ZmPAO) in the cell wall of tobacco plants induced early differentiation and precocious cell death of xylem precursors along with enhanced in vivo H₂O₂ production in xylem tissues of maize and tobacco root apex, respectively (Tisi et al., 2011a, 2011b). Owing to the high rate of apoplastic Spd catabolism supposed to occur upon Spd supply or PAO overexpression, it has been suggested that, in such unphysiological status, plants may experience stress-like conditions under which the AO-driven H₂O₂ production may have a role in promoting xylem differentiation (Tisi et al., 2011a).Taking into account that AtAO1 is expressed at the early stages of vascular tissue development in Arabidopsis roots (Møller et al., 1998; Møller and McPherson, 1998), we explored the possibility that the cell wall-localized AtAO1 could be involved in JA signaling, leading to the induction of root xylem differentiation by means of both pharmacological and forward/reverse genetic approaches. Our results show that Atao1 loss-of-function mutants (TAIR accession nos. 1005841762 and 4284859) are unresponsive to MeJA signaling leading to root protoxylem differentiation. Conversely, AtAO1 overexpression leads to early protoxylem differentiation along with enhanced H₂O₂ production in the root zone where the first protoxylem cells with fully developed secondary wall thickenings can be observed. Overall, our data show that H₂O₂ produced via AtAO1-driven Put oxidation behaves as a mediator in JA-induced root xylem differentiation.Moreover, the data presented here suggest that Put-derived H₂O₂ may play a role in xylem differentiation under stress growth conditions such as those signaled by MeJA or simulated by either Put treatment or AtAO1 overexpression.     

The Regulation of Exogenous Jasmonic Acid on UV-B Stress Tolerance in Wheat

Enhanced ultraviolet-B radiation (UV-B, 280?C320?nm) is recognized as one of the environmental stress factors that cannot be neglected. Jasmonic acid (JA) is an important signaling molecule in a plant??s defense against biotic and abiotic stresses. To determine the role of exogenous JA in the resistance of wheat to stress from UV-B radiation, wheat seedlings were exposed to 0.9?kJ?m^?2?h^?1 UV-B radiation for 12?h after pretreatment with 1 and 2.5?mM JA, and the activity of antioxidant enzymes, the level of malondialdehyde (MDA), the content of UV-B absorbing compounds, photosynthetic pigments, and proline and chlorophyll fluorescence parameters were measured. The results of two-way ANOVA illustrated that the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT), MDA level, anthocyanin and carotenoid (Car) content, and almost all chlorophyll fluorescence parameters were significantly affected by UV-B, JA, and UV-B?×?JA (P?<?0.05) [the maximal efficiency of photosystem II photochemistry (F _v/F _m) was not affected significantly by UV-B radiation]. Duncan??s multiple-range tests demonstrated that UV-B stress induced a significant reduction in plant photosystem II (PSII) function and SOD activity and an increased level of membrane lipid peroxidation, indicative of the deleterious effect of UV-B radiation on wheat. JA pretreatment obviously mitigated the detrimental effect of UV-B on PSII function by increasing F _v/F _m, reaction centers?? excitation energy capture efficiency (F _v??/F _m??), effective photosystem II quantum yield (??PSII), and photosynthetic electron transport rate (ETR), and by decreasing nonphotochemical quenching (NPQ) of wheat seedlings. Moreover, the activity of SOD and the content of proline and anthocyanin were provoked by exogenous JA. However, the MDA level was increased and Car content was decreased by exogenous JA with or without the presence of supplementary UV-B, whereas the contents of chlorophyll and flavonoids and related phenolics were not affected by exogenous JA. Meanwhile, exogenous JA resulted in a decrease of CAT and POD activities under UV-B radiation stress. These results partly confirm the hypothesis that exogenous JA could counteract the negative effects of UV-B stress on wheat seedlings to some extent.     

Phosphatidic Acid Regulates Microtubule Organization by Interacting with MAP65-1 in Response to Salt Stress in Arabidopsis

Membrane lipids play fundamental structural and regulatory roles in cell metabolism and signaling. Here, we report that phosphatidic acid (PA), a product of phospholipase D (PLD), regulates MAP65-1, a microtubule-associated protein, in response to salt stress. Knockout of the PLDα1 gene resulted in greater NaCl-induced disorganization of microtubules, which could not be recovered during or after removal of the stress. Salt affected the association of MAP65-1 with microtubules, leading to microtubule disorganization in pldα1cells, which was alleviated by exogenous PA. PA bound to MAP65-1, increasing its activity in enhancing microtubule polymerization and bundling. Overexpression of MAP65-1 improved salt tolerance of Arabidopsis thaliana cells. Mutations of eight amino acids in MAP65-1 led to the loss of its binding to PA, microtubule-bundling activity, and promotion of salt tolerance. The pldα1 map65-1 double mutant showed greater sensitivity to salt stress than did either single mutant. These results suggest that PLDα1-derived PA binds to MAP65-1, thus mediating microtubule stabilization and salt tolerance. The identification of MAP65-1 as a target of PA reveals a functional connection between membrane lipids and the cytoskeleton in environmental stress signaling.