Disturbance regimes in a wetland remnant: implications for trait-displacements and shifts in the assemblage structure of carabid beetles (Coleoptera: Carabidae)

Studies on disturbance regimes involving carabid beetles have mainly focused on forest habitats. We therefore decided to analyze the effects of disturbance on carabid communities in a wetland remnant (Lake Chiusi, central Italy). Results highlighted the presence of a disturbance gradient affecting the species richness and trait-displacement of carabid communities. Carabids were sampled with pitfall traps from March to October 2008 at nine randomly selected sample stations; a set of landscape attributes were also collected. Principal Component Analysis (PCA) and generalized linear mixed models (GLMMs) were used to link the distribution of carabid life-history traits and species richness with the most informative combination of landscape attributes. The first PCA axis (PC1) showed significant correlation with “distance to the lake shoreline” and “perimeter-area ratio”, highlighting the presence of a disturbance-axis. The second and third axes accounted only for a trivial portion of the total variance. GLMMs revealed a progressive decrease in the number of hygrophilous species from the core of the wetland to its outer areas. Similar trends were observed for species richness and for predator species with good dispersal ability and larval period in summer. Our results highlight the importance of taking into account community-wide functional implications in landscape ecology studies.     

Two-scale modelling of Saponaria bellidifolia Sm. (Caryophyllaceae) abundance on limestone outcrops from its northern range periphery (Southeastern Carpathians)

We modelled the effect of habitat heterogeneity on the abundance of the submediterranean Saponaria bellidifolia, a red list species in Romania. The study was designed at two scales: 100 and 0.5 m². At larger scale, generalized additive models and canonical correspondence analysis were used to model the density of ramets, whereas at microscale, binomial logistic regression was employed to model the species’ occurrence. S. bellidifolia abundance responded sensitively to habitat type (classified as “grassy”, “rocky” and “scree”), rather than to microclimatic variables. At both scales, habitat type was the best predictor of ramet abundance, followed by slope and vegetation cover. At 0.5 m², soil depth was also a good predictor of species occurrence. The data revealed that screes are the most suitable habitats for hosting relatively large populations of this rare species, because of occasional natural disturbances and presumably lower interspecific competition.     

Nest-site habitat selection by Lesser Rheas ( Rhea pennata pennata ) in northwestern Patagonia, Argentina

Selection of nest-site habitat by a population of wild Lesser Rheas (Rhea pennata pennata) was studied in the northwestern Patagonia steppe, Argentina, during two reproductive seasons (2004/2005 and 2005/2006). Nest spatial distribution was compared with randomly selected points in the study area. Contrary to observations in other ratite species, nest distribution showed an aggregate pattern associated with “mallín” (meadow) areas, which are habitats of higher productivity in the Patagonia steppe. Moreover, similar to observations made on the Greater Rhea (Rhea americana), vegetation cover was higher in nest sites than in randomly selected sites, probably because higher vegetation provides concealment from predators and protection from the strong westerly winds that frequent in this region. Our results reinforce the importance of “mallín” areas for the reproduction and conservation of this threatened ratite species.     

Haplotype Diversity in “Source-Sink” Dynamics of <Emphasis Type="Italic">Escherichia coli</Emphasis> Urovirulence

FimH, the mannose-specific, type 1 fimbrial adhesin of Escherichia coli, acquires amino acid replacements adaptive in extraintestinal niches (the genitourinary tract) but detrimental in the main habitat (the large intestine). This microevolutionary dynamics is reminiscent of an ecological “source-sink” model of continuous species spread from a stable primary habitat (source) into transient secondary niches (sink), with eventual extinction of the sink-evolved populations. Here, we have adapted two ecological analytical tools—diversity indexes D _S and α—to compare size and frequency distributions of fimH haplotypes between evolutionarily conserved FimH variants (“source” haplotypes) and FimH variants with adaptive mutations (putative “sink” haplotypes). Both indexes show two- to threefold increased diversity of the sink fimH haplotypes relative to the source haplotypes, a pattern that ran opposite to those seen with nonstructural fimbrial genes (fimC and fimI) and housekeeping loci (adk and fumC) but similar to that seen with another fimbrial adhesin of E. coli, papG-II, also implicated in extraintestinal infections. The increased diversity of the sink pool of adhesin genes is due to the increased richness of the haplotypes (the number of unique haplotypes), rather than their evenness (the extent of similarity in relative abundances). Taken together, this pattern supports a continuous emergence and extinction of the gene alleles adaptive to virulence sink habitats of E. coli, rather than a one-time change in the habitat conditions. Thus, ecological methods of species diversity analysis can be successfully adapted to characterize the emergence of microbial virulence in bacterial pathogens subject to source-sink dynamics. [Reviewing Editor: Dr. Margaret Riley]     

Selection of indicative taxa for river habitats: a case study on benthic macroinvertebrates using indicator species analysis and the random forest methods

The aim of the study was to evaluate the exclusivity and/or preference of macroinvertebrate taxa for river habitats. Indicator species analysis and random forests methods were applied to the data set of macroinvertebrate samples taken from 58 sampling points. Samples were classified according to habitat types defined by the position in a river channel and local hydraulic characteristics. 86 macroinvertebrate taxa were included in the analyses. High indicative values for habitats (importance value ≥50 and/or indicator value ≥40) were identified for 26 taxa. The results of both methods can be considered similar. Merged habitats of channel margin (margin of main channel and side arms) were mainly defined by “negative” indicator taxa (correct classification of given samples was caused by non-occurrence and low abundances of certain taxa in this habitat). In general, there was only a small group of taxa preferring these habitats. Taxa were not fully habitat specific because they mostly occurred in two or three habitat types. This could be the result of autecological plasticity of individual taxa and the connectivity among habitats. According to the experience from this case study, it can be concluded that both random forests and IndVal methods are suitable for the detection of indicative species, and random forests method has some additional advantages.     

Competitive reversals inside ecological reserves: the role of external habitat degradation

 Habitat degradation is the slow – and often subtle – deterioration in habitat quality that accompanies human activities through increases in road density, pesticide use, hunting pressure, etc. Such degradation is of particular concern in fragmented habitats where economic or jurisdictional boundaries rather than ecological ones determine the level of exploitation adjoining habitat patches endure. To examine the consequences habitat degradation might have on species interactions, we posited a patch of pristine habitat surrounded by “matrix” habitat whose degradation level was variable. Using a coupled pair of diffusive Lotka–Volterra competition equations with Robin (mixed) boundary conditions, we modeled the dynamics of two competing species inhabiting the pristine patch and incorporated matrix degradation through a tunable “hostility” parameter representing species’ mortality rates in the matrix. We found that the numerical range of competition coefficients over which one species is the competitive dominant and the other inferior may grow or shrink as matrix quality deteriorates. In some cases, degradation of the exterior habitat would bring about a complete competitive reversal inside the preserve. This result, wherein a formerly inferior species supplants a formerly dominant one – even inside the “protected” remnant patch itself – has policy implications for both nature reserve design and management of human activities outside park boundaries. Received: 30 April 1997     

Plectroninia celtica n. sp. (Calcarea, Minchinellidae), a new species of “pharetronid” sponge from bathyal depths in the northern Porcupine Seabight, NE Atlantic

Recent pharetronid sponges were regarded as relict species in tropical and subtropical waters, inhabiting cryptic habitats on coral reefs and in caves. More recent findings of a new species of the genus Plectroninia off northern Norway, with an inner fused skeleton have changed that view. Recent investigations on the sponge fauna of the “Propeller Mound”, northern Porcupine Seabight, focusing on sponges growing on the azooxanthellate cold-water coral Lophelia pertusa (Linné 1758) and Madrepora oculata Linné 1758, established the presence of a species of Plectroninia new to science. Its status as a common species within this deep-water coral habitat and the general status of the genus Plectroninia are discussed.     

Carabids of differently aged reforested pinewoods and a natural pine forest in a historically modified landscape

We studied the responses of carabid beetles to Pinus sylvestris ageing in four plantations aged 2–3, 10–12, 40–45 and 80 years, and one mature natural pine forest – in NW Spain. In 2003, a total of 16,866 carabid individuals (50 species) were collected using pitfall traps. Overall carabid abundance and species richness differed significantly among the five age classes with the highest values occurring in the youngest age class. The carabid assemblages of the initial stages of the ageing sequence differed considerably from the later stages that were relatively similar to each other – a consequence of differences in species dominance at specific age classes. Yet, the carabid assemblage of the 80-year-old stage did not approach that of the natural pine forest, but, unexpectedly, the 40–45-year-old age class did. Canopy cover and soil pH were the main environmental variables that affected the carabid distribution. We also detected species-level responses to the ageing process, with open habitat species more abundantly collected at the youngest stages and forest specialists at the older stages. We conclude that carabid beetles responded predictably to the pine plantation ageing process, and that although pine forests in NW Spain do not seem to provide habitat for unique species, they act as secondary habitats for forest specialist species.     

Effects of stream restorations on riparian mesohabitats,vegetation and carabid beetles

We investigated the effects of hydromorphological restoration measures (mainly the removal of bank fixations) on riparian mesohabitats, vegetation and carabid beetles by comparing 24 restored to nearby non-restored floodplain sections in Germany. Mesohabitats were recorded along ten equally-spaced transects, plant communities and riparian plant and carabid beetle species along three transects per section. Based on 18 indices including habitat and species diversity, taxonomic diversity and functional indices we compared the frequency and magnitude of changes following restoration, both for the overall dataset and for each site individually. Riparian habitat diversity doubled in restored sections compared to non-restored sections. The numbers of vegetation units and plant and carabid beetle species richness also doubled in restored sections, whereas changes in Shannon diversity were most pronounced for mesohabitats and riparian plants. Taxonomic diversity of carabid beetles decreased in restored sections reflecting post restoration dominance of riparian Bembidion species. Stress-tolerant pioneers of plant and especially carabid species benefit strongly from the re-establishment of open sand and gravel bars, while hygrophilous species, which also include non-riparian species, did not respond to restoration. We conclude that restoring river hydromorphology has almost generally positive effects on riparian habitats and riparian biodiversity. Riparian biota are thus well-suited indicators for the effects of hydromorphological restoration.     

Coexistence of congeneric spiny lobsters on coral reefs: differences in conspecific aggregation patterns and their potential antipredator benefits

Den sharing by conspecific spiny lobsters (aggregation) is modulated by chemical attraction but may confer several, not necessarily mutually exclusive, antipredator byproduct benefits: a “guide effect”, which only benefits the individual attracted to a sheltered conspecific; a “dilution effect”, which reduces per-capita risk of predation simply through aggregation; or active “group defense”. Each potential benefit has a different set of predictors (relationships between aggregation and conspecific or predator densities), but conflicting results could suggest the simultaneous operation of more than one benefit. These predictions were tested for coexisting Panulirus guttatus (a reef-obligate) and Panulirus argus (a temporary reef-dweller) using data collected during 11 surveys on fixed sites over a coral reef in Mexico. P. guttatus greatly outnumbered P. argus, but P. argus showed a greater tendency to aggregate. All three benefits of den sharing operated for the more social P. argus, with “group defense” being of the most benefit for larger individuals, and the “guide” and “dilution” effects for smaller individuals recently immigrating into the reef habitat and sharing dens with larger conspecifics. P. guttatus did not display “group defense” and its aggregations appeared to be modulated by the interplay between attraction and aggressive behaviors. This species relied more on solitary crypticity, especially at larger sizes, but appeared to benefit from a “guide effect” at high conspecific densities. In experimental tanks, each species tended to aggregate when tested separately, but when tested jointly, aggregation among P. guttatus was significantly reduced. The experimental results reflect the differential patterns of aggregation between the fore-reef, where P. guttatus dominated, and the back-reef, where coexistence of both species was greater.     

Assessing habitat and resource availability for an endangered desert bird species in eastern Morocco: the Houbara Bustard

In Morocco we tested the consistency between an a priori habitat classification based on topography, hydrology, vegetation structure and composition, and an a posteriori classification based on arthropod assemblages, in a plain supporting wild endangered Houbara Bustards. According to vegetation structure, we defined seven a priori habitats that differed significantly in perennial cover and height. A multivariate multiple regression analysis showed a significant relationship between arthropod assemblages and vegetation structure. Canonical Analyses of Principal Coordinates, conducted simultaneously on direct searches of arthropods and trapping data, showed significant differences between assemblages in both cases, and produced two similar constrained ordinations of six a posteriori habitats: esparto grass (Stipa tenacissima), temporarily flooded areas, fields, “reg” with short perennials, “reg” with tall perennials and wadis. The two sampling methods reflected a dominance of ants and beetles. Arthropod biomasses increased significantly in spring and then decreased significantly in summer for beetles, and in autumn for ants. No strong differences appeared between habitats within seasons, especially in spring, indicating a uniform distribution of food resources during the Houbara breeding season. The “reg” with short perennials had the highest ant biomass in summer. This “reg” and fields also supported the highest arthropod biomass in autumn. Variation in arthropod biomass was a pertinent factor that should be integrated into Houbara habitat selection studies. The definition of habitat availability based on easily identifiable landscape units, combined with empirical tests on arthropod communities provided an accurate classification for habitat selection studies and conservation planning.     

Flying over water: how “On bird species diversity” influenced aquatic ecology

Habitat complexity has long been known to influence animal community structure by increasing the number of available habitats. Fifty years have passed since MacArthur brothers published the seminal paper “On bird species diversity”, which revolutionized studies of habitat structure. This paper first evidenced and quantified the relationship between species diversity (birds) and habitat structural complexity (the number of stratified layers of landscape vegetation). In this article, we aim to pay homage to R. H. MacArthur’s contribution and to briefly analyze the citation history and influence of “On bird species diversity”, focusing primarily on aquatic studies. We searched for all papers that cited “On bird species diversity” on Thomson Reuters (ISI—Web of Knowledge) and analyzed them for temporal citation trends. In addition, considering only aquatic papers, we explored whether and how habitat complexity was measured, as well as the ecological organization level, attributes of organisms, taxonomic groups and study design (observational or experimental). “On bird species diversity” citations increased over time, but this paper was less cited by limnologists compared to terrestrial and marine scientists. The majority of investigations in aquatic ecosystems quantified habitat complexity, but few used mathematical modeling. The high number of citations, which continues to increase, shows the great influence of “On bird species diversity” on ecological studies and typifies it as a classic in the ecological literature. However, the low citation frequency found in papers devoted to freshwater ecosystems indicates that limnologists in general neglect this original contribution in studies of habitat complexity.     

Responses of mobile epifauna to small-scale seagrass patchiness: is fragmentation important?

Habitat fragmentation is a process involving splitting of continuous habitats into smaller, and more isolated habitat patches. To assess the effects of small-scale habitat patchiness and isolation without the confounding effect of habitat loss on benthic macrofauna, two field experiments were conducted in the Archipelago Sea, SW Finland. Using artificial seagrass units (ASUs) we contrasted continuous patches (“C”) with fragmented patches (“F”) of the same combined area as the continuous patches. The fragmentation treatment involved two isolation distances (0.5 and 3.0 m) between the ASUs (“F 0.5”) and (“F 3.0”). This design was repeated in two consecutive experiments where the patch area was 0.25 and 0.0625 m², respectively. Mobile epifauna were allowed to colonize patches for 12 days in both experiments. In both experiments, the total epifaunal density was significantly higher in the “F 0.5” treatment than in the “C” treatment, and the three dominant taxa showed positive or neutral responses to the habitat configuration. No fragmentation effect on the number of species was detected in either of the experiments, but fragmentation had a negative effect on the epifaunal diversity (Shannon’s H′) in the experiment with the largest patch area. Epifaunal diversity was significantly lower in “F 3.0” treatment than in “C” or “F 0.5” treatments in the first experiment, indicating stronger effect of isolation instead of fragmentation per se. Edge effects were indirectly tested by comparing epifaunal densities with patch edge:area ratios. The results suggest that edge effects may have a more important role than patch size for the total densities of epifaunal taxa, and that small, isolated patches have equal or higher habitat value compared to larger fragments.     

The visual ecology of Puerto Rican anoline lizards: habitat light and spectral sensitivity

The visual ecology of six closely related species of Puerto Rican anoline lizards was investigated and they were found to occupy four distinct habitat types in terms of light conditions: “full shade”, “partial shade”, “no shade”, and “forest canopy.”The habitats differed substantially in total radiance and irradiance as well as in the shape of the irradiance spectrum. The shape of the radiance spectrum was similar in all of the habitats. We used electroretinogram (ERG) flicker photometry to measure spectral sensitivity and found the curves for all six species to be similar. The spectral sensitivity peaked in the range 550–560 nm, which matched the peak in spectral radiance for all of the habitats. The shape of the spectral-sensitivity curve was similar to those of a number of other terrestrial vertebrates. We suggest that the convergence of the shape of the photopic ERG-determined spectral-sensitivity curve in many terrestrial vertebrates may, in part, be due to the fact that the background radiance of many terrestrial habitats is dominated by the reflectance spectrum of green vegetation which peaks at 550 nm. Accepted: 14 May 1997     

New approach for evaluating habitat stability using scarce records for both historical and contemporary specimens: a case study using Carabidae specimen records

Natural history collections, such as specimen records, are crucial resources for conservation and habitat management. However, these data are usually scarce compared to physical environmental data (e.g., digital terrain maps) that we often have little species data and a lot of physical environmental data with which to evaluate habitats. In this paper, we propose a method for evaluating habitat stability using scarce natural history records and abundant physical environmental data. We used both historical and contemporary specimen records of carabid beetles (areas in which records of the same species were recorded during both periods) and evaluated the attributes of these areas using terrain characteristics. We found two common terrain characteristics among the occupied areas: large total river length and low variation in elevation. These terrain characteristics suggest that habitats of carabid species have been conserved in disturbed and wet environments for a long time. These results are consistent with the ecological characteristics of carabid beetles. Our study shows that scarce natural history collections, combined with ingenuity, can be useful for evaluating habitats.     

Enhancement of juvenile Caribbean spiny lobsters: an evaluation of changes in multiple response variables with the addition of large artificial shelters

Shortage of natural crevice shelters may produce population bottlenecks in juvenile Caribbean spiny lobsters (Panulirus argus), a socially gregarious species. We conducted a field experiment to test enhancement of a local population of juvenile P. argus with the addition of artificial shelters (“casitas”) that mimic large crevices (1.1 m² in surface area and 3.8 cm in height). Changes in density and biomass of juvenile lobsters 15–50 mm carapace length (CL) were assessed with a multiple before-after control-impact (MBACI) analysis. Separate analyses were also conducted on small (15–35 mm CL) and large (35.1–50 mm CL) juveniles to assess size-related effects. First, we carried out 13 lobster surveys on nine fixed 1-ha sites over a shallow reef lagoon (“before” period). Then, we deployed ten casitas in each of five sites and left four sites as controls, and conducted 22 further surveys (“after” period). Deployment of casitas resulted in a sixfold increase in juvenile density (76% contributed by small and 24% by large juveniles) and a sevenfold increase in biomass (40 and 60%, respectively). Capture–recapture results revealed that enhancement was achieved not by promoting individual growth but by increasing survival, persistence, and foraging ranges of small and large juveniles. Casitas both mitigated shortage of natural shelter and increased sociality, allowing for cohabitation of smaller, more vulnerable juveniles with larger conspecifics that have greater defensive abilities. Casitas may help enhance local populations of juvenile P. argus in Caribbean seagrass habitats, typically poor in natural crevice shelters. The use of MBACI and the simultaneous assessment of multiple interrelated response variables may be a powerful analytical approach to test shelter limitation in other species and to examine the function of structural habitat in other systems.     

Habitat use and potential interactions between the house mouse and lesser white-toothed shrew on an island undergoing habitat restoration

To forecast the potential impact of plant community and dry-stone wall restoration on an insular population of the lesser white-toothed shrewCrocidura suaveolens Pallas, 1811, shrew and house mouseMus musculus Linnaeus, 1758 abundances were assessed in 3 anthropogenic habitats on Béniguet Island, Brittany, France, by a standardised annual trapping system checked yearly for 9 years and in 6 “natural” habitats by trap-lines. The standardised trapping system showed that abundances of both species fluctuated synchronously for nine years, suggesting that interactions between the species had little impact if any on abundances. Mice were trapped in all habitats, but shrews only in “stone” habitats except for rare occurrences in one damp depression. Ruderal habitat was rarely used by either species. Data suggest that on Béniguet Island: (1)M. musculus is associated with anthropogenic habitats but is not as strictly tied to them as at nearby continental sites; (2)C. suaveolens is synanthropic, as has been reported in continental northern France; (3) shingle beaches and seashore food resources are particularly important forC. suaveolens; (4) the relationship betweenC. suaveolens andM. musculus could not be determined by the experiments and, if it exists at all, appears to be more competitive than predatory. Grassland restoration is unlikely to affect shrew populations. Dry-stone wall restoration may temporarily affect shrews but should ultimately benefit them.     

The evolution of “egalitarian” and “despotic” social systems among macaques

Recent studies of captive macaques have revealed considerable inter-species differences in dominance styles among females. In “egalitarian” species such as stumptail (Macaca arctoides) or tonkean macaques (M. tonkeana), social interactions are more symmetrical and less kin-biased than in “despotic” species such as Japanese (M. fuscata) or rhesus macaques (M. mulatta). Field observations of moor macaques (M. maurus), close relatives of tonkean macaques, suggest that tolerance during feeding characterizes their egalitarian dominance style in the natural habitat. Although it has been proposed that communal defense against other groups may be the main selective force in the evolution of egalitarian dominance style among females, few field data support this prediction. A game theory analysis showed that both an “egalitarian” strategy and a “despotic” strategy are possible evolutionarily stable strategies (ESS) under certain conditions. The difference in dominance styles might reflect the difference in ESS. This means that an egalitarian dominance style can emerge without strong between-group contest competition. A phylogenetic comparison among macaques suggests that despotic dominance styles very likely evolved from egalitarian dominance styles. In the future, primate socioecological studies should pay more attention to the evolutionary history of each species.