Relationships between fishes and habitat in rainforest streams in Sabah, Malaysia

Distinct fish assemblages were found at the mesohabitat scale in 14 streams in eastern Sabah, Malaysia. Sites were designated a priori as pool, run or riffle on the basis of physical habitat structure and properties. Principal components analysis of physical habitat data confirmed the validity of the a priori designation with a major axis of three correlated variables: water velocity, depth and substratum type. Canonical discriminant analysis on fish abundance and biomass data confirmed the existence of a specialized assemblage of fishes from riffle areas of all streams. Overall, pool and run assemblages were highly variable, dependent on stream size, but also variable between streams of the same size. Multiple regression of species richness, diversity, abundance and biomass data on principal components revealed significant but low correlations with measured habitat variables. Riffle habitats showed lower species richness and diversity but high abundance. The fish assemblage in riffles was dominated by balitorid species, specialized for fast-water conditions. Pool assemblages had the highest species diversity and were dominated by cyprinid species of a number of morphological and ecological guilds. Run assemblages were intermediate in assemblage characteristics between riffle and pool assemblages. Between-stream variation in assemblage composition was less than within-stream variation. Of 38 species collected, seven could be designated as riffle specialists, 18 as pool specialists and 13 as ubiquitous, although most of the latter showed size-specific habitat use with larger size classes found in slower, deeper water.     

Comparisons and relationships of the African and European Miocene carnivoran assemblages

In the present article, the Middle and Late Miocene carnivoran faunas of Europe and Africa are compared for establishing their relationships. The Middle Miocene carnivoran assemblages from both continents are quite different at the specific and generic levels, less expressed in family composition. The comparison of the Late Miocene carnivoran assemblages indicates the following: the African carnivoran assemblage is different from the European ones both at the generic and specific level; the carnivoran faunas of Europe can be split into two geographic groups, “western” and “eastern”; the Turolian African assemblage is more diversified at the family level; the African carnivoran assemblage differs from the European ones in the presence of herpestids, the higher abundance of mustelids and the fewer hyaenids. It is more similar to the Late Miocene carnivoran assemblages of western and central Europe than eastern Europe.     

Species Richness of Nonvolant Small Mammals Along Elevational Gradients in Northwestern Argentina

The Nevados del Aconquija (5500 m) and Cumbres Calchaquíes (4600 m) are isolated mountain ranges that contain at least three physiognomic units in their eastern slopes: Neotropical rainforests, Andean grasslands and High Andean Steppes. Despite phytogeographical similarities, the two ranges differ in the amount and spatial distribution of rainfall over the elevation gradient. We studied terrestrial small mammals by direct trapping in two altitudinal transects on the eastern slope of the two mountain ranges. We recorded the changes in richness and species composition, as well as the relationships between species and microhabitats at each altitudinal level. The results show a similar structure of the small mammal assemblage in the two ranges. The largest differences, in terms of species composition, were registered at lower elevation forests, and faunal affinities increased with elevation to the point of finding identical species composition at the top of the mountains. Species richness showed a clear curvilinear pattern with a peak at the upper limit of the forests. Our findings suggest that total rainfall has an important influence on the composition and abundance of small mammal species but apparently not on the species richness along the elevation gradient. The highest values of species richness were observed at the sites where a contact between two different physiognomic units exists. These results indicate that habitat heterogeneity plays an important role in allowing the juxtaposition of small terrestrial mammal assemblages of the highlands and lowlands at a given point, contributing significantly to the considerable diversity of species observed in intermediate altitudinal sites.
     

Spatial and temporal distributions of epiphytic diatoms growing on Thalassia testudinum Banks ex König: relationships to water quality

The spatial and temporal distributions of the epiphytic diatom flora on Thalassia testudinum was described within the Florida Bay estuary and at one Atlantic site east of the Florida Keys over a 1-year period. Species of the genus Mastogloia dominated the epiphytic diatom flora (82 out of 332 total species). Nonmetric Multidimensional Scaling (NMDS) and Analysis of Similarity (ANOSIM) revealed four distinct spatial assemblages and two temporal assemblages. Eastern and western Florida Bay assemblages were identified within the estuary. The eastern diatom assemblage was characterized by high relative abundances of Brachysira aponina and Nitzschia liebetruthii, while the western assemblage was characterized by the abundance of Reimerothrix floridensis, particularly during summer. Two diverse and distinct marine assemblages, one located in the Gulf of Mexico along the western edge of Florida Bay and the other behind the Florida reef tract in the Atlantic Ocean, were also identified. Analysis of the spatial distribution of diatoms and water quality characteristics within Florida Bay suggest that these assemblages may be structured by salinity and nutrient availability, particularly P. The Gulf of Mexico and the western Florida Bay assemblages were associated with higher water column salinities and TP concentrations and lower DIN concentrations and TN:TP ratios relative to the eastern Florida Bay assemblage. The temporal variation in diatom assemblages was associated with water temperature, though temporal indicator species were few relative to the number of spatial indicators. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users.     

Environmental and spatial variables influence the composition of frog assemblages in sub-tropical eastern Australia

In community ecology, contrasting theories suggest that the distribution and abundance of species, and thus the composition of assemblages, are influenced by i) environmental gradients, or ii) contagious biotic processes such as predation, competition, dispersal and disease. In the former case, sites with similar environments would tend to support similar assemblages, while in the latter, geographically proximate sites would tend to support more similar assemblages than widely separated sites. I investigated the relative influence of environmental variables and spatial position on the composition of frog assemblages at forest streams in sub-tropical eastern Australia using redundancy analysis (RDA) and partial RDA. Data on the maximum abundance of the frog species at 65 survey sites were transformed such that RDA would yield the Hellinger distance between sites. The following analysis identified 11 environmental variables that explained 45% of the variation in the abundance of species at the survey sites (the species matrix), as a proportion of total variance. The geographic co-ordinates of the survey sites accounted for 12%, while the environmental and spatial variables combined accounted for 47% of the variation in the species matrix. Partial redundancy analysis indicated that of the explained variation, 74% was purely environmental, 5% was purely spatial and 21% was spatial environmental variation. This study is the first to quantify the relative influence of environmental and spatial variables on the composition of amphibian assemblages. It provides support for both the environmental control model and the biotic control model of species' distributions and assemblage composition, although environmental variables appear to have the greater effect at this scale of analysis.     

Macroecological analysis of the fish fauna inhabiting Cymodocea nodosa seagrass meadows

In this study, patterns in the taxonomic richness and composition of the fish fauna inhabiting Cymodocea nodosa seagrass meadows were described across their entire distribution range in the Mediterranean Sea and adjacent Atlantic Ocean. Specifically, the study tested whether there are differences in the composition of fish assemblages between those ecoregions encompassed by the distribution range of C. nodosa, and whether these differences in composition are connected with differences in bioclimatic affinities of the fish faunas. A literature review resulted in a total of 19 studies, containing 22 fish assemblages at 18 locations. The ichthyofauna associated with C. nodosa seagrass meadows comprises 59 families and 188 species. The western Mediterranean (WM) Sea has the highest species richness (87 species). Fish assemblages from the Macaronesia–Canary Islands, the Sahelian Upwelling, South European Atlantic Shelf and the WM differ, in terms of assemblage composition, relative to other ecoregions. In contrast, the composition of the fish fauna from the central and eastern Mediterranean overlaps. There is a significant serial correlation in fish assemblage composition between adjacent ecoregions along the distribution range of C. nodosa. Dissimilarities in assemblage composition are connected with the geographical separation between locations, and the mean minimum annual seawater temperature is the environmental factor that explains most variation in fish assemblage composition.     

Asteroids,ophiuroids and holothurians from the southeastern Weddell Sea (Southern Ocean)

Until the early 1980s, the composition and distribution of the asteroid (starfish), ophiuroid (brittle star) and holothurian (sea cucumber) bottom fauna of the southeastern Weddell Sea was virtually unknown. This southernmost part of the Atlantic sector of the Southern Ocean is a typical high-latitude Antarctic region located in the circumpolar permanent pack-ice zone. It became accessible for large-scale scientific surveys only through the availability of modern ice-breaking research vessels, such as the German RV “Polarstern”. Here, we describe a dataset of the faunal composition and abundance of starfish, brittle star and sea cucumber assemblages in this area, based on collections from trawl catches carried out during three “Polarstern” cruises in 1983, 1984 and 1985. The set comprises a total of 4,509 records of abundances of 35 asteroid species (with a total of 2,089 specimens) and 38 ophiuroid species (with a total of 18,484 specimens) from 34 stations, as well as of 66 holothurian species (with a total of 20,918 specimens) from 59 stations including zero-abundances (absences). A synthesizing zoogeographical community analysis confirms the presence of three distinct assemblages of asteroids, ophiuroids, and holothurians with highest species richness on the eastern shelf. Overall, starfishes, brittle stars and sea cucumbers were present at all sites investigated in the study area but composition and abundance of asterozoan (asteroids and ophiuroids together) and holothurian fauna varied considerably. A synthesizing zoogeographical community analysis confirms the presence of three distinct assemblages of asteroids, ophiuroids, and holothurians with highest species richness on the eastern shelf. In the case of asterozoans, water depth and latitude seemed to be the most important drivers of assemblage distribution and composition. One of the holothurian assemblages was part of the rich macrozoobenthic community dominated by a diverse and abundant epifauna, mainly sponges and gorgonians. Another one was mainly composed of vagrant deposit-feeding species inhabiting a predominantly non-colonised substratum. In addition, a mixed holothurian assemblage was identified.     

Community structure and biogeography of shore fishes in the Gulf of Aqaba,Red Sea

Shore fish community structure off the Jordanian Red Sea coast was determined on fringing coral reefs and in a seagrass-dominated bay at 6 m and 12 m depths. A total of 198 fish species belonging to 121 genera and 43 families was recorded. Labridae and Pomacentridae dominated the ichthyofauna in terms of species richness and Pomacentridae were most abundant. Neither diversity nor species richness was correlated to depth. The abundance of fishes was higher at the deep reef slope, due to schooling planktivorous fishes. At 12 m depth abundance of fishes at the seagrass-dominated site was higher than on the coral reefs. Multivariate analysis demonstrated a strong influence on the fish assemblages by depth and benthic habitat. Fish species richness was positively correlated with hard substrate cover and habitat diversity. Abundance of corallivores was positively linked with live hard coral cover. The assemblages of fishes were different on the shallow reef slope, deep reef slope and seagrass meadows. An analysis of the fish fauna showed that the Gulf of Aqaba harbours a higher species richness than previously reported. The comparison with fish communities on other reefs around the Arabian Peninsula and Indian Ocean supported the recognition of an Arabian subprovince within the Indian Ocean. The affinity of the Arabian Gulf ichthyofauna to the Red Sea is not clear. Received in revised form: 2 November 2001 Electronic Publication     

Composition,abundance, and diversity of peracarid crustaceans on a transect of the Kolbeinsey Ridge,north of Iceland

Composition, abundance, and diversity of Crustacea Peracarida were investigated on a transect across the Kolbeinsey Ridge, north of Iceland in summer 1992 during the M21/5 expedition with RV Meteor. This ridge is influenced by both the cold East Greenland Current as well as the warmer East Iceland Current, mixing with warmer Atlantic water. Sampling has been performed using an epibenthic sledge modified after Rothlishberg & Pearcy (1977). Being one of the most important components of the macrobenthic epi- and suprafauna, composition, abundance, and diversity of peracarids was significantly different on western and eastern sides of the slope. Isopoda and Amphipoda were most frequent at all stations, followed by Cumacea and Tanaidacea. Mysidacea have only been sampled on the eastern slope. Abundance and diversity were highest on the two eastern stations in depths of 830–940 meters, values decreased on the deepest eastern station in 1100 meter depth and were also low on both western stations in 830 and 860 meters depth. These differences are probably due to sediment composition and to quality and quantity of organic carbon reaching the seafloor, rather than to differences in salinity or in hydrographic regimes. The high abundance of peracarid crustaceans, especially of epibenthic species, capable of burrowing within the first centimeters of sediment, indicate their high potential of bioturbation and also their importance for benthic carbon cycling.     

Distribution patterns of diatom surface sediment assemblages in the Laptev Sea (Arctic Ocean)

The modern diatom distribution in the Laptev Sea, Arctic Ocean, was investigated in 89 surface sediment samples. Diatom concentrations are relatively low showing values between 0.01×10⁶ and 6.7×10⁶ valves per gram dry sediment. Based on a factor analysis using seventeen taxa or taxa groups five diatom surface sediment assemblages can be defined: the ice diatom assemblage of the central region of the Laptev Sea, the Chaetoceros assemblage of the eastern and southeastern shelf, the Thalassiosira antarctica assemblage of the continental slope and deep sea, the freshwater diatom assemblage in the vicinity of river mouths and deltas, and the Thalassiosira nordenskioeldii assemblage which shows a patchy occurrence on the central Laptev Sea shelf. The distribution pattern of diatom assemblages in surface sediment is significantly related to oceanographic conditions of surface water masses. The main factors controlling the distribution of diatoms in the Laptev Sea are the riverine freshwater input during the summer which strongly affects the salinity conditions, and the sea-ice extent. Furthermore, the composition of the Thalassiosira antarctica assemblage of the continental slope is largely influenced by dissolution and lateral transport processes.     

The Chañares Formation: a window to a Middle Triassic tetrapod community

The Chañares Formation is known worldwide for its diverse and well‐preserved Ladinian non‐marine tetrapod assemblage, including a wide variety of archosauriform reptiles (proterochampsids, early offshoots of the crocodilian line and dinosaurian precursors) and synapsids represented by dicynodonts and cynodonts. This tetrapod record offers an opportunity to evaluate, within a taphonomic context, the palaeoecology of this Middle Triassic fauna. The taphonomic analysis of the Chañares assemblage, under precise stratigraphical control, indicates that it is a good representation of the original faunal composition allowing us to address the palaeoecological interactions between its components. Mass estimations and morphology‐based palaeobiological inferences of Chañares tetrapods are used to reconstruct the trophic structure of the community. Chañares tetrapod fauna was numerically dominated by middle‐sized herbivorous and small faunivorous cynodonts, whereas middle‐sized faunivorous cynodonts and large dicynodonts were less common. In contrast to the therapsids, which show a low species‐richness and high abundance, the archosauriforms are less abundant, but are the most taxonomically diverse group. The large paracrocodylomorphs (estimated body masses between 350 and 500 kg) are identified as the top predators of the community, and the traversodontid cynodonts and dicynodonts (estimated body masses reaching approximately 43 and 360 kg, respectively) are indentified as the base herbivores of the trophic pyramid. We conclude that the worldwide faunal composition in the Ladinian reveals two continental assemblages: an eastern Laurasian assemblage dominated by temnospondyl amphibians; and a western Gondwanan assemblage dominated by therapsids but including a wide diversity of archosauriforms.     

Spatial variation in relative abundance of a widespread, numerically dominant fish species and its effect on fish assemblage structure

Collections of fish assemblages from streams in the midwestern United States were used to examine assemblage-level effects of spatial variation in relative abundance of the red shiner, Cyprinella lutrensis, a widespread and highly abundant minnow species. This species has been widely introduced outside its native range and is suspected to have impacted local assemblages where it has become established. Given its overall dominance of midwest fish assemblages, and its suspected impact on assemblage structure, we asked if structure of the residual fish assemblages (red shiners excluded) was a function of the relative abundance of red shiners throughout the native range of C. lutrensis in the USA. Although red shiner ranked first in abundance in half of the assemblages and numerically dominated 28% of the assemblages, red shiner relative abundance in an assemblage had no detectable effect on richness, diversity, evenness, or complexity of other (residual) species in the assemblage. Relative abundance of red shiners did have a positive effect on the abundance of benthic minnows in the residual assemblage, but not on water column minnows that are ecologically most like red shiners. Environmental factors did not explain a significant amount of the variation in relative abundance of red shiners, but did explain some variation in residual assemblage structure. Although widespread and numerically dominant at many localities, red shiners do not appear to have a strong impact on local fish assemblage structure within their native range. This is in sharp contrast to the reported negative effects of red shiners on fish assemblages where they have been introduced outside their native range.     

Do changes in seaweed biodiversity influence associated invertebrate epifauna?

Most investigations of biogenic habitat provision consider the promotion of local biodiversity by single species, yet habitat-forming species are often themselves components of diverse assemblages. Increased prevalence of anthropogenic changes to assemblages of habitat-forming species prompts questions about the importance of facilitator biodiversity to associated organisms. We used observational and short-term (30 days) manipulative studies of an intertidal seaweed system to test for the implications of changes in four components of biodiversity (seaweed species richness, functional group richness, species composition, and functional group composition) on associated small mobile invertebrate epifauna. We found that invertebrate epifauna richness and abundance were not influenced by changes in seaweed biodiversity. Invertebrate assemblage structure was in most cases not influenced by changes in seaweed biodiversity; only when algal assemblages were composed of monocultures of species with ‘foliose’ morphologies did we observe a difference in invertebrate assemblage structure. Correlations between algal functional composition and invertebrate assemblage structure were observed, but there was no correlation between algal species composition and invertebrate assemblage structure. These results suggest that changes in seaweed biodiversity are likely to have implications for invertebrate epifauna only under specific scenarios of algal change.     

Habitat specialization in tropical continental shelf demersal fish assemblages

The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1-10 m depth), down the fore reef slope to the reef base (10-30 m depth) then across the adjacent continental shelf (30-110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats through which fish can migrate.     

Declining diversity and abundance of High Arctic fly assemblages over two decades of rapid climate warming

Insects are particularly vulnerable to rapid environmental changes, which are disproportionally affecting high latitudes. Increased temperature could influence insect species differentially and reshape assemblages over time. We quantified temporal assemblage turnover of Arctic Diptera (flies) in the Muscidae, one of the most diverse and abundant families of Arctic insects, using time series data from Zackenberg, north‐east Greenland. We measured temporal patterns of abundance, diversity, and composition of muscid assemblages in wet fen, mesic and arid heath habitats from yearly collections spanning 1996–2014 and tested their relationship to climate. A total of 18 385 individuals representing 16 species of muscid flies were identified. A significant decrease of 80% of total muscid abundance was observed during the study period. Species richness declined in each habitat type but this trend was not significant across habitats. The number of common and abundant species also decreased significantly over time across habitats revealing a temporal modification of species evenness. Significant temporal changes in composition observed in the wet fen and across habitats were mainly driven by a change in relative abundance of certain species rather than by species replacement. Shift in composition in each habitat and decline in muscid abundance across habitats were associated with summer temperature, which has significantly increased over the study period. However, relationships between temperature and muscid abundance at the species level were noticeable for a few species only. Significant directional change in composition was documented in the wet fen but no biotic homogenization across habitats was observed. As one of the few studies of species‐level changes in abundance, diversity and composition of an insect taxon in the Arctic over the past two decades, our study shows that habitat types may modulate insect species responses to recent climate change and that contrasting species responses can alter species assemblages within a few decades.     

Benthic foraminiferal distribution and abundance changes in Skagerrak surface sediments: 1937 (Höglund) and 1992/1993 data compared

Both living (stained) and dead (unstained) foraminiferal assemblages from surface sediments (0–2 cm) in the northwestern part of the Skagerrak have been studied in order to (1) define and characterize the distribution of various modern benthic environments and (2) by comparing these findings with surface samples collected 40–60 years ago, to document possible faunal changes that might have occurred. The investigated area is physiographically divided into the Norwegian slope, the Skagerrak Basin, and the Danish slope. The latter is under the influence of the Jutland Current, while the basin and the investigated parts of the Norwegian slope are bathed in Atlantic water. All areas have bottom waters with a high oxygen concentration. Three living (stained) and three dead (unstained) assemblages occupy the three physiographic areas. Only one assemblage (on the Norwegian slope) is common to both the living and dead assemblages but the boundaries between them lie at comparable depths. The higher standing crops are found on the fertile Danish slope while the lower ones are in the deep basin where the diversity is at a maximum. In the dead assemblages, the relative abundance of agglutinated tests increases with depth. Comparison with data collected 40 to 60 years ago shows increases in absolute numbers of tests, especially in the deep basin. There are changes in assemblage compositions in all areas. The dominant species found in 1937 are different from those of 1992/1993. There is a major change in the basin where one agglutinated species has changed its depth distribution downslope and two present day abundant species are new arrivals. These faunal events are probably linked to environmental changes.     

Ecological zoogeography of the bats of Paraguay

Aim To relate the composition of bat assemblages in Paraguay to environmental factors (vegetation) and to test the hypothesis that the observed patterns of distribution of Paraguayan mammals is ultimately due to soils and geological features. Location Paraguay. Methods Museum specimens were used to create a data base of 3762 individuals of forty-eight species collected in twenty-six 50 × 50 km sites distributed throughout the country. Proportion of each of sixteen vegetation types per site was estimated from vegetation maps. Vegetation and bat data were related using canonical correspondence analysis (CCA) and Mantel tests. The same analyses were performed with the bat data grouped in terms of trophic strategies. Results A significant relationship was found between composition of vegetation and composition of bat assemblages. CCA ordination arranged plant associations and bat assemblages into three distinct groups: Dry Chaco, Floodable Lands and Eastern Paraguay, which correspond to the major characteristics of the Paraguayan vegetation, geology and soils. Frugivorous bats were restricted to Eastern Paraguay and Floodable Lands, whereas most insectivore and omnivore species occur across the entire country. However, the maximum abundance of insectivorous and omnivorous species within each genus indicates that there is at least a partial segregation of species to one of the three regions, and in those cases where the maximum abundance of congeneric species coincide, those species differ considerably in size. Main conclusions The Paraguayan bat fauna is a composite of species from various South American biomes, with no endemic species. However, species are not randomly distributed across the country despite the lack of geographical barriers and the high dispersal capabilities of bats. Instead, species presence at any given site is strongly associated with vegetation patterns that are ultimately the result of the geological history of the area. This correlation can be explained partially in terms of habitat suitability and resource availability. Additionally, results suggest that interspecific interactions are also an important component in determining the composition of a given bat assemblage.     

Trends in estuarine fish assemblages facing different environmental conditions: combining diversity with functional attributes

Changes in the Mondego estuary (Portugal) fish assemblage were documented with a long-term monitoring program between June 2003 and March 2010, during which several extreme environmental events occurred, including severe droughts and heavy precipitation. The structure and composition of the fish assemblage was analyzed based on a set of indicators: dominance, diversity, evenness, and composition in functional groups (ecological and feeding guilds). Higher species number, diversity, and evenness were observed in the dry periods. Variations in the relative abundance of the ecological guilds were also observed: in dry years, estuarine residents were the most abundant group, while in typical and rainy years, the marine estuarine-dependent species increased in abundance. Among the feeding guilds, the most abundant group was the invertebrate and fish feeders. Planktivorous and invertebrate feeders occurred in higher abundance in dry years, while the opposite was verified for omnivorous species. The mean trophic level of the fish assemblage increased during the drought period, constantly decreasing afterward, which could be attributed to an increase in predators in dry years. The cumulative responses of estuarine fish assemblages to ongoing climate changes and discrete extreme weather events confirm their importance as indicators of environmental changes.     

Method-integrated fish assemblage structure at two spatial scales along a free-flowing stretch of the Austrian Danube

Fish assemblages in large rivers are highly diverse communities. However, a single method to describe these complex systems adequately is not available as of yet. In this paper we propose a combination of normalized catch-per-unit-effort data of three fish sampling methods, thus providing a more inclusive representation of the overall assemblage. We investigate fish species occurrence and abundance in a survey at three consecutive sites in the free-flowing main channel of the Austrian Danube east of Vienna. Using boat and wading electrofishing, as well as longline fishing we collected data in four mesohabitats at each site. We analysed richness, assemblage structure and abundance of single species and tested site and mesohabitat as differentiating forces on the fish assemblage structure, applying PERMANOVA and NMDS. The investigated sites are populated by a species-rich fish assemblage, of which we collected a total of 36 species. The composition of the assemblage was rather consistent except for the occasional occurrence of rare species. At the smaller mesohabitat scale, however, the assemblages differed considerably and hydromorphological conditions were apparently the major structuring force. Overall, the combination of methods considerably improves the assessment across sites and mesohabitats and contributes to our understanding of large river fish assemblages.