Nematode Community Structure in Forest Woodlots. II. Ordination of Nematode Communities

Intersite relationships among nematode communities of 18 Indiana mixed hardwood stands of varying composition, soils, physiography and past management practices were determined by community ordination techniques. All sites were sampled in April, July and October of 1968 and 1969, and ordinations were based on the number of individuals of each nematode species at each site at each sampling period. The resulting groupings correlated well with groupings based on forest types and successional stages of the tree communities at the sites, and also with groupings based on well-defined soil types. Results were similar to those obtained previously with a resemblance equation which used qualitative data only; but the present study provided more information on species associations and relationships and ecological distance between sites.     

Plant-Parasitic Nematode Communities in Dogwood,Maple, and Peach Nurseries in Tennessee

Nursery blocks (48 dogwood, 27 red maple, and 17 peach) distributed among 20 Tennessee nurseries were sampled for nematodes in March, July, and October 1981. Plant-parasitic nematodes were extracted from soil, counted by genera, and identified to species after fixation. A total of 57 species in 24 genera were found, with 1-16 species occurring in a site. The species most commonly detected were Paratylenchus projectus and Xiphinema americanum, which were found in 88% and 78% of the sites, respectively. Relationships existed between distribution and densities of some species present in more than 10% of the sites and certain soil factors (pH, bulk density, texture, and organic matter content). Plant-parasitic nematode community diversity was related to tree age, percentage of weed ground cover, and number of weed species. Site similarities in community ordinations were dependent on the individual nurseries sampled, tree age, and soil type, but clusters of sites of similar tree ages and soil types were not exclusive.     

Nematode communities of small farmland ponds

The nematofauna of 14 farmland ponds, selected according to a gradient of surrounding agricultural land-use intensity, from five regions in North-West of Belgium were studied. The total nematode density (9–411 ind./10 cm2 per pond), and especially the number of species (4–12 species per pond) was especially low in these ponds. In total, 17 genera of free-living benthic nematodes, belonging to 15 families, are identified. Tobrilus gracilis and Eumonhystera filiformis were the most common species and were found in 13 and 12 of the 14 sampled ponds, respectively. The genera Tobrilus and Eumonhystera jointly comprise 77% of the total nematofauna. Consequently, the investigated water bodies were dominated by deposit feeding Monhysteridae and/or by chewing Tobrilidae. Diplogasteridae and Rhabditidae, normally related with eutrophic habitats, were almost absent. In order to explain the variation of total density, diversity, feeding-types composition and the individual density of the six most important species within ponds as well, sets of environmental variables were statistically selected. It was demonstrated that morphologically very similar species can show highly different ecological properties. The presence of a substantial mud layer and of an overall high level of eutrophication as well as the presence of possibly associated anaerobic conditions are put forward as the main factors explaining the observed low density and diversity. Total phosphate concentration and sediment characteristics seem to be the most important variables to explain the nematode community structure. However, a clear pattern of environmental variables, agricultural land use and nematode assemblages was not observed. Handling editor: K. Martens     

Nematode community shifts in response to experimental warming and canopy conditions are associated with plant community changes in the temperate-boreal forest ecotone

Global climate warming is one of the key forces driving plant community shifts, such as range shifts of temperate species into boreal forests. As plant community shifts are slow to observe, ecotones, boundaries between two ecosystems, are target areas for providing early evidence of ecological responses to warming. The role of soil fauna is poorly explored in ecotones, although their positive and negative effects on plant species can influence plant community structure. We studied nematode communities in response to experimental warming (ambient, +1.7, +3.4 °C) in soils of closed and open canopy forest in the temperate-boreal ecotone of Minnesota, USA and calculated various established nematode indices. We estimated species-specific coverage of understory herbaceous and shrub plant species from the same experimental plots and tested if changes in the nematode community are associated with plant cover and composition. Individual nematode trophic groups did not differ among warming treatments, but the ratio between microbial-feeding and plant-feeding nematodes increased significantly and consistently with warming in both closed and open canopy areas and at both experimental field sites. The increase in this ratio was positively correlated with total cover of understory plant species, perhaps due to increased predation pressure on soil microorganisms causing higher nutrient availability for plants. Multivariate analyses revealed that temperature treatment, canopy conditions and nematode density consistently shaped understory plant communities across experimental sites. Our findings suggest that warming-induced changes in nematode community structure are associated with shifts in plant community composition and productivity in the temperate-boreal forest ecotones.     

Long-term Disturbance Effects in the Nematode Communities of South Mississippi Woodlands

The effects of soil disturbance on the nematode community were assessed at 30 sites on the outer coastal plain of Mississippi, representing four ages since soil disturbance plus a control group of six undisturbed sites. Thirty-five taxa were encountered, dominated in abundance and taxonomic richness by plant and bacterial feeders. Nematodes were more abundant and more taxonomically rich in sites with a low slope and deep litter cover, distant from trees. Plant feeders were more numerous at sites with a dense herb cover, suggesting limitation by food availability. When sites were arranged as a chronosequence, herb cover, litter depth, soil organic matter, soil moisture, and tree canopy cover increased through time consistent with succession to forest. The abundance of most trophic groups decreased in the 10 to 20 years following disturbance and increased thereafter, a pattern repeated in taxonomic richness of plant and bacterial feeders. Fifty years after disturbance, nematode abundance had not returned to levels observed in control sites. These results suggest that nematode succession following soil disturbance is a gradual process regulated by establishment of aboveground vegetation. There was no evidence of dispersal limitation or facilitation by colonist nematode species.     

Nematode Population and Community Dynamics in Soybean-Wheat Cropping and Tillage Regimes

The nematode community structures of various soybean-wheat regimes and of a single-cropped, conventionally tilled soybean regime were studied at two sites in Tennessee. Each of the 100 nematode species identified in the study was placed in one of five trophic groups, the most diverse being plant parasites (31 species), followed by Dorylaimida (26 species), bacterivores (23 species), fungivores (15 species), and predators (5 species). No significant differences in overall diversity and dominance among treatments and trophic groups were found. Densities of Heterodera glycines Ichinohe infective juveniles were significantly higher in single-cropped, conventionally tilled soybeans in July. When data were subjected to ordination analysis, it was shown that plant-parasitic nematode communities produced an aggregation of conventionally tilled, single-cropped soybean plots when compared to all double-cropped treatments. Ordination of overall nematode communities yielded similar results.     

Nonhost Root Penetration by Soybean Cyst Nematode

A total of 66 plants in 50 species were inoculated with eggs and juveniles of soybean cyst nematode, Heterodera glycines. Roots were stained and observed for penetration and development of the nematode. Twenty-six plants were not penetrated; twenty-three were penetrated, but there was no development of the nematode; eight were penetrated with some nematode development; two were penetrated and had considerable nematode development, but few nematodes, if any, matured; and seven were penetrated with many nematodes maturing. The penetration of nonhosts may imply some susceptibility and that populations eventually would build up on the penetrated plants. Plants not penetrated may be useful as rotation plants because no reproduction would occur.     

Nematode communities of Lake Tana and other inland water bodies of Ethiopia

Free-living nematodes from littoral benthic sediments of four lakes, two rivers and a hot spring in Ethiopia are studied. Populations of nematodes encountered are identified to the species level. The general nematode (generic and species) composition of the lakes, rivers and hot spring are appraised by giving special emphasis to the nematodes from L. Tana, i.e. three sites where different environmental factors come into play were considered. Gelda is a site close to a river inlet (River Gelda), Gedero is a site exposed to strong wind action while Zegie is a secluded site protected by a land mass from any strong wind action. Nematode communities were identified using classification and ordination techniques. The identified communities are then characterised with respect to species composition, biomass, density, diversity, size structure, feeding type and maturity index. Also, the vertical distribution of nematodes is examined at the community and species level. An attempt has been made to associate these variations with the considered environmental factors viz. site, water depth, sediment depth, median grain size and percentage of mud in the sediment.     

Nematode Community Structure in a Vineyard Soil

Distribution of the nematode community in a California vineyard was studied over a 13-month period. Omnivorous and microbivorous nematodes were similarly distributed in the root zone, with greatest densities occurring between vine rows and near the soil surface. Greatest densities of plant-parasitic nematodes were found in the vine row, with the individual species differing in their vertical distribution. Total nematode biomass was greatest between rows near the surface. Biomass of plant parasites was greatest in the upper 30 cm of soil in the row, whereas biomass of microbivores was greatest in this region between rows. Of the plant-parasitic nematodes, the variability in distribution among vines was greatest for Paratylenchus hamatus and least for Meloidogyne spp.     

Nematode parasitism in a northern European drosophilid community

Many factors may influence the structure of invertebrate communities. Among these is the presence of parasites which attack some or all members of a guild and potentially promote coexistence of competitor species. We assessed the prevalence of nematode (Allantonematidae) parasitism in Dutch woodland drosophilids (Diptera). Nematodes were found in 6 of the 18 drosophilid species sampled (percentage parasitism in parentheses): Drosophila phalerata (16%), D. kuntzei (5.1%), D. immigrans (0.5%), D. testacea (1.2%) and D. transversa (2.8%) were all parasitized by Howardula aoronymphium and D. subobscura (3%) was parasitized by Parazitylenchus diplogenus. This is the first report of nematode parasitism of D. immigrans and D. transversa. There were no important seasonal trends in percentage parasitism. We explored the consequences of nematode parasitism for individual drosophilids. Nematodes did not exert an important influence on the wing length (adult body size) of the drosophilids we sampled, but egg loads (fecundities) of female D. phalerata, D. subobscura and D. kuntzei were reduced by nematode parasitism. Parasitism rates were positively correlated with relative host abundance, in Dutch and other communities, suggesting that species diversity is promoted by a disproportionately high parasitism of more common host species.     

Current Research on the Major Nematode Problems in Japan

Among important nematode species occurring in Japan, current research achievements with the following four nematodes are reviewed: 1) Soybean cyst nematode (SCN), Heterodera glycines - breeding for resistance, race determination, association with Cephalosporium gregatum in azuki bean disease, and isolation of hatching stimulant. 2) Potato-cyst nematode (PCN), Globodera rostochiensis - pathotype determination (Ro 1), breeding for resistance, and control recommendations. 3) Pinewood nematode (PWN), Bursaphelenchus xylophilus - primary pathogen in pine wilt disease, life cycle exhibiting a typical symbiosis with Japanese pine sawyer, Monochamus alternatus, and project for control. 4) Rice root nematodes (RRN), Hirschmanniella imamuri and H. oryzae - distribution of species, population levels in roots, and role of these nematodes in rice culture.     

基于发根培养体系的甘薯品种抗线虫特性鉴定研究

利用发根农杆菌诱导的甘薯发根体系,鉴定甘薯品种抗线虫的特性。试验在甘薯品种徐薯18、栗子香和鲁78066诱导的发根体系上,接种马铃薯腐烂线虫,六周后调查发根繁殖线虫情况及线虫侵染发根情况,然后评价它们的抗线虫特性。结果表明:培养六周后,线虫在徐薯18、栗子香和鲁78066发根上繁殖倍数分别为8.82,0.76和0.70;在徐薯18发根上观察到多处线虫侵入位点,在栗子香和鲁78066发根上只观察到一处线虫侵入位点;基于以上结果,鉴定徐薯18为易感线虫病品种,栗子香和鲁78066为抗线虫病品种,徐薯18和鲁78066的鉴定结果和发病地自然诱发鉴定结果相一致,栗子香不同于发病地自然诱发鉴定结果。鉴定结果表明:用不同品种的甘薯发根作鉴定其抗线虫特性,具有体系简单、直观方便、重复性好以及不受自然环境影响等优点,进一步完善可以作为植物对线虫病抗性鉴定新的体系。     

Nitrogen Addition Regulates Soil Nematode Community Composition through Ammonium Suppression

Nitrogen (N) enrichment resulting from anthropogenic activities has greatly changed the composition and functioning of soil communities. Nematodes are one of the most abundant and diverse groups of soil organisms, and they occupy key trophic positions in the soil detritus food web. Nematodes have therefore been proposed as useful indicators for shifts in soil ecosystem functioning under N enrichment. Here, we monitored temporal dynamics of the soil nematode community using a multi-level N addition experiment in an Inner Mongolia grassland. Measurements were made three years after the start of the experiment. We used structural equation modeling (SEM) to explore the mechanisms regulating nematode responses to N enrichment. Across the N enrichment gradient, significant reductions in total nematode abundance, diversity (H' and taxonomic richness), maturity index (MI), and the abundance of root herbivores, fungivores and omnivores-predators were found in August. Root herbivores recovered in September, contributing to the temporal variation of total nematode abundance across the N gradient. Bacterivores showed a hump-shaped relationship with N addition rate, both in August and September. Ammonium concentration was negatively correlated with the abundance of total and herbivorous nematodes in August, but not in September. Ammonium suppression explained 61% of the variation in nematode richness and 43% of the variation in nematode trophic group composition. Ammonium toxicity may occur when herbivorous nematodes feed on root fluid, providing a possible explanation for the negative relationship between herbivorous nematodes and ammonium concentration in August. We found a significantly positive relationship between fungivores and fungal phospholipid fatty acids (PLFA), suggesting bottom-up control of fungivores. No such relationship was found between bacterivorous nematodes and bacterial PLFA. Our findings contribute to the understanding of effects of N enrichment in semiarid grassland on soil nematode trophic groups, and the cascading effects in the detrital soil food web.     

Nematode Community Structure of Forest Woodlots: III. Ordinations of Taxonomic Groups and Biomass

Nematode communities of 18 Indiana mixed hardwood stands were comprised of an average of 23% tylenchid species, 31% dorylaimid species, and 46% species of six other orders. Based on total numbers of individuals present the stands averaged 42% tylenchids, 20% dorylaimids, and 38% individuals of other orders. Ordination of the sites using data only for tylenchid species gave an even distribution of sites, indicating little effect of site disturbances on tylenchid populations. By contrast an ordination using data for dorylaimid species showed a high degree ofd issimilarity between reference sites indicating that disturbances at some sites had drastically affected the dorylaimid fauna. An ordination utilizing biomass of all species present was very similar to the ordination based on data for dorylaimid species only.     

Phenotypic Adaptations in Pasteuria spp. Nematode Parasites

The endospore and central core diameters of 69 isolates of Pasteuria spp. showed a relationship with the body wall thickness of their corresponding host nematodes. A relationship was also observed when cuticle and hypodermis layer data were derived from transmission electron microscopy micrographs. Principal component analysis and hierarchical cluster analysis based on endospore and central core diameters and host nematode body wall thickness delineated six distinct groups. Five groups included nematode species of distinct taxa. Endospore morphometric diversity appears to be the result of an evolutionary adaptation that occurred during host nematode speciation related to the forces acting on adhering endospores and(or) to the host cuticle penetration phase. On this basis, the validity of endospore morphometrics and host taxonomy as significant parameters in discriminating Pasteuria species is questioned.     

Nematode resistance

Plant-parasitic nematodes are major pests of both temperate and tropical agriculture. Many of the most damaging species employ an advanced parasitic strategy in which they induce redifferentiation of root cells to form specialized feeding structures able to support nematode growth and reproduction over several weeks. Current control measures, particularly in intensive agriculture systems, rely heavily on nematicides but alternative strategies are required as effective chemicals are withdrawn from use. Here, we review the different approaches that are being developed to provide resistance to a range of nematode species. Natural, R gene-based resistance is currently exploited in traditional breeding programmes and research is ongoing to characterize the molecular basis for the observed resistant phenotypes. A number of transgenic approaches hold promise, the best described being the expression of proteinase inhibitors to disrupt nematode digestion. The application of plant-delivered RNA interference (RNAi) to silence essential nematode genes has recently emerged as a potentially valuable resistance strategy.     

Nematode mitochondrial metagenomics: A new tool for biodiversity analysis

DNA barcoding approaches have greatly increased our understanding of biodiversity on the planet, and metabarcoding is widely used for classifying members of the phylum Nematoda. However, loci typically utilized in metabarcoding studies are often unable to resolve closely related species or are unable to recover all taxa present in a sample due to inadequate PCR primer binding. Mitochondrial metagenomics (mtMG) is an alternative approach utilizing shotgun sequencing of total DNA to recover the mitochondrial genomes of all species present in samples. However, this approach requires a comprehensive reference database for identification and currently available mitochondrial sequences for nematodes are highly dominated by sequences from the order Rhabditida, and excludes many clades entirely. Here, we analysed the efficacy of mtMG for the recovery of nematode taxa and the generation of mitochondrial genomes. We first developed a curated reference database of nematode mitochondrial sequences and expanded it with 40 newly sequenced taxa. We then tested the mito-metagenomics approach using a series of nematode mock communities consisting of morphologically identified nematode species representing various feeding traits, life stages, and phylogenetic relationships. We were able to identify all but two species through the de novo assembly of COX1 genes. We were also able to recover additional mitochondrial protein coding genes (PCGs) for 23 of the 24 detected species including a full array of 12 PCGs from five of the species. We conclude that mtMG offers a potential for the effective recovery of nematode biodiversity but remains limited by the breadth of the reference database.     

Changes in Nematode Communities in Different Physiographic Sites of the Condor Seamount (North-East Atlantic Ocean) and Adjacent Sediments

Several seamounts are known as ‘oases’ of high abundances and biomass and hotspots of biodiversity in contrast to the surrounding deep-sea environments. Recent studies have indicated that each single seamount can exhibit a high intricate habitat turnover. Information on alpha and beta diversity of single seamount is needed in order to fully understand seamounts contribution to regional and global biodiversity. However, while most of the seamount research has been focused on summits, studies considering the whole seamount structure are still rather poor. In the present study we analysed abundance, biomass and diversity of nematodes collected in distinct physiographic sites and surrounding sediments of the Condor Seamount (Azores, North-East Atlantic Ocean). Our study revealed higher nematode biomass in the seamount bases and values 10 times higher in the Condor sediments than in the far-field site. Although biodiversity indices did not showed significant differences comparing seamount sites and far-field sites, significant differences were observed in term of nematode composition. The Condor summit harboured a completely different nematode community when compared to the other seamount sites, with a high number of exclusive species and important differences in term of nematode trophic diversity. The oceanographic conditions observed around the Condor Seamount and the associated sediment mixing, together with the high quality of food resources available in seamount base could explain the observed patterns. Our results support the hypothesis that seamounts maintain high biodiversity through heightened beta diversity and showed that not only summits but also seamount bases can support rich benthic community in terms of standing stocks and diversity. Furthermore functional diversity of nematodes strongly depends on environmental conditions link to the local setting and seamount structure. This finding should be considered in future studies on seamounts, especially in view of the potential impacts due to current and future anthropogenic threats.     

Nematode chromosomes

The nematode Caenorhabditis elegans has shed light on many aspects of eukaryotic biology, including genetics, development, cell biology, and genomics. A major factor in the success of C. elegans as a model organism has been the availability, since the late 1990s, of an essentially gap-free and well-annotated nuclear genome sequence, divided among 6 chromosomes. In this review, we discuss the structure, function, and biology of C. elegans chromosomes and then provide a general perspective on chromosome biology in other diverse nematode species. We highlight malleable chromosome features including centromeres, telomeres, and repetitive elements, as well as the remarkable process of programmed DNA elimination (historically described as chromatin diminution) that induces loss of portions of the genome in somatic cells of a handful of nematode species. An exciting future prospect is that nematode species may enable experimental approaches to study chromosome features and to test models of chromosome evolution. In the long term, fundamental insights regarding how speciation is integrated with chromosome biology may be revealed.     

Benthic-Pelagic Coupling: Effects on Nematode Communities along Southern European Continental Margins

Along a west-to-east axis spanning the Galicia Bank region (Iberian margin) and the Mediterranean basin, a reduction in surface primary productivity and in seafloor flux of particulate organic carbon was mirrored in the in situ organic matter quantity and quality within the underlying deep-sea sediments at different water depths (1200, 1900 and 3000 m). Nematode standing stock (abundance and biomass) and genus and trophic composition were investigated to evaluate downward benthic-pelagic coupling. The longitudinal decline in seafloor particulate organic carbon flux was reflected by a reduction in benthic phytopigment concentrations and nematode standing stock. An exception was the station sampled at the Galicia Bank seamount, where despite the maximal particulate organic carbon flux estimate, we observed reduced pigment levels and nematode standing stock. The strong hydrodynamic forcing at this station was believed to be the main cause of the local decoupling between pelagic and benthic processes. Besides a longitudinal cline in nematode standing stock, we noticed a west-to-east gradient in nematode genus and feeding type composition (owing to an increasing importance of predatory/scavenging nematodes with longitude) governed by potential proxies for food availability (percentage of nitrogen, organic carbon, and total organic matter). Within-station variability in generic composition was elevated in sediments with lower phytopigment concentrations. Standing stock appeared to be regulated by sedimentation rates and benthic environmental variables, whereas genus composition covaried only with benthic environmental variables. The coupling between deep-sea nematode assemblages and surface water processes evidenced in the present study suggests that it is likely that climate change will affect the composition and function of deep-sea nematodes.